mRNA_H-paniculata_contig45055.11337.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45055.11337.1
Unique NamemRNA_H-paniculata_contig45055.11337.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: D8LC12_ECTSI (GBP5, guanylate-binding protein (Divergent) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC12_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.590e-33
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1
Query:    4 SKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLGE 204
            S  VRVLFADVEGQGDRD AYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLG+
Sbjct:   88 SNQVRVLFADVEGQGDRDAAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLGD 154          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: A0A7S3URQ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URQ4_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 1.140e-20
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    4 SKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLG 201
            SK ++V F D EGQGDRD  YDARL S  L  ++CV+FNW+DSLQ DR+LNLLGVM RAA NV+ G
Sbjct:   96 SKGMQVGFVDAEGQGDRDAEYDARLVSPALLASRCVLFNWKDSLQRDRILNLLGVMSRAAMNVEKG 161          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: M4B1N2_HYAAE (GBP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1N2_HYAAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.330e-19
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 ASKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLGE 204
            ASK +R+ F D EGQGDRD+ YD+RL S +L  +K VIFNW+DSLQ DRMLNLL V+ RAA  ++L +
Sbjct:  129 ASKDIRIGFVDAEGQGDRDITYDSRLVSPVLLASKVVIFNWKDSLQADRMLNLLAVLARAAQGIELAD 196          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: A0A3R6YGE9_9STRA (GBP domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YGE9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.980e-19
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 ASKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLGE 204
            +S  + + F D EGQGDRD+ YD+RL S +L  +K VIFNW+DSLQ DRMLNLL V+ +AA NV+L E
Sbjct:   97 SSPNMSIGFVDAEGQGDRDITYDSRLVSPVLLASKVVIFNWKDSLQADRMLNLLAVLAKAAQNVELAE 164          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: A0A835YY61_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY61_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.640e-19
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   19 VLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDR------MLNLLGVMQRAAHNV 192
            VL ADVEGQGDRDV++DARLAS++LPL KCV+FNW+DSLQVDR      MLN L VM+ AA NV
Sbjct:  108 VLLADVEGQGDRDVSHDARLASSVLPLAKCVLFNWKDSLQVDRVLAVDRMLNQLAVMRHAALNV 171          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: D0MZ80_PHYIT (GBP domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0MZ80_PHYIT)

HSP 1 Score: 88.6 bits (218), Expect = 6.340e-19
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 ASKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDL 198
            ASK + V F D EGQGDRD+ YD+RL S +L  +K VIFNW+DSLQ DRMLNLL V+ RAA  ++L
Sbjct:  120 ASKNIHVGFVDAEGQGDRDITYDSRLVSPVLLASKVVIFNWKDSLQADRMLNLLAVLARAAQGIEL 185          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: H3GMX8_PHYRM (GBP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMX8_PHYRM)

HSP 1 Score: 88.2 bits (217), Expect = 8.650e-19
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 ASKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLGE 204
            AS+ V V F D EGQGDRD+ YD+RL S +L  +K VIFNW+DSLQ DRMLNLL V+ RAA  ++L +
Sbjct:  120 ASRNVHVGFVDAEGQGDRDITYDSRLVSPVLLSSKVVIFNWKDSLQADRMLNLLAVLARAAQGIELAD 187          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: A0A2P4XDC1_9STRA (Guanylate-binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XDC1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.600e-18
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 ASKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLGE 204
            ASK + V F D EGQGDRD+ YD+RL S +L  +K V+FNW+DSLQ DRMLNLL V+ RAA  ++L +
Sbjct:  117 ASKGIHVGFVDAEGQGDRDITYDSRLVSPVLLSSKVVLFNWKDSLQADRMLNLLAVLARAAQGIELAD 184          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: A0A418FZ26_9STRA (GBP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FZ26_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.080e-18
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 ASKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLGE 204
            +S  + + F D EGQGDRD+ YD+RL S +L  +K VIFNW+DSLQ DRMLNLL V+ +AA NV+L E
Sbjct:   97 SSPNMSIGFVDAEGQGDRDITYDSRLVSPVLLASKVVIFNWKDSLQADRMLNLLAVLAKAAQNVELAE 164          
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Match: A0A3R7Y6U9_9STRA (GBP domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y6U9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.180e-18
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 ASKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRMLNLLGVMQRAAHNVDLGE 204
            +S  + + F D EGQGDRD+ YD+RL S +L  +K VIFNW+DSLQ DRMLNLL V+ +AA NV+L E
Sbjct:   97 SSPNMSIGFVDAEGQGDRDITYDSRLVSPVLLASKVVIFNWKDSLQADRMLNLLAVLAKAAQNVELAE 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45055.11337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC12_ECTSI5.590e-3394.03GBP5, guanylate-binding protein (Divergent) n=1 Ta... [more]
A0A7S3URQ4_HETAK1.140e-2065.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
M4B1N2_HYAAE1.330e-1960.29GBP domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A3R6YGE9_9STRA2.980e-1958.82GBP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A835YY61_9STRA4.640e-1970.31SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
D0MZ80_PHYIT6.340e-1962.12GBP domain-containing protein n=14 Tax=Phytophthor... [more]
H3GMX8_PHYRM8.650e-1960.29GBP domain-containing protein n=1 Tax=Phytophthora... [more]
A0A2P4XDC1_9STRA1.600e-1858.82Guanylate-binding protein n=1 Tax=Phytophthora pal... [more]
A0A418FZ26_9STRA2.080e-1858.82GBP domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A3R7Y6U9_9STRA2.180e-1858.82GBP domain-containing protein n=5 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45055contigH-paniculata_contig45055:465..671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue3.8e-28
Seed eggNOG ortholog2880.D8LC12
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG2037@1,KOG2037@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930352.7989-CDS-H-paniculata_contig45055:464..6711622930352.7989-CDS-H-paniculata_contig45055:464..671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45055 465..671 +
1691481253.944198-CDS-H-paniculata_contig45055:464..6711691481253.944198-CDS-H-paniculata_contig45055:464..671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45055 465..671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45055.11337.1prot_H-paniculata_contig45055.11337.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45055 465..671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45055.11337.1

>prot_H-paniculata_contig45055.11337.1 ID=prot_H-paniculata_contig45055.11337.1|Name=mRNA_H-paniculata_contig45055.11337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
ASKTVRVLFADVEGQGDRDVAYDARLASAILPLTKCVIFNWRDSLQVDRM
LNLLGVMQRAAHNVDLGE*
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mRNA from alignment at H-paniculata_contig45055:465..671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45055.11337.1 ID=mRNA_H-paniculata_contig45055.11337.1|Name=mRNA_H-paniculata_contig45055.11337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig45055:465..671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCAAAACAGTGCGAGTTCTCTTCGCTGATGTGGAGGGACAGGGCGA CAGAGACGTGGCCTACGACGCTCGATTAGCATCAGCCATTCTTCCACTCA CTAAGTGTGTCATCTTCAATTGGCGCGACAGTCTACAAGTGGACCGCATG CTCAACCTGCTAGGGGTCATGCAGAGGGCCGCCCATAACGTCGACCTAGG CGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45055:465..671+

>mRNA_H-paniculata_contig45055.11337.1 ID=mRNA_H-paniculata_contig45055.11337.1|Name=mRNA_H-paniculata_contig45055.11337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig45055:465..671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCAAAACAGTGCGAGTTCTCTTCGCTGATGTGGAGGGACAGGGCGA
CAGAGACGTGGCCTACGACGCTCGATTAGCATCAGCCATTCTTCCACTCA
CTAAGTGTGTCATCTTCAATTGGCGCGACAGTCTACAAGTGGACCGCATG
CTCAACCTGCTAGGGGTCATGCAGAGGGCCGCCCATAACGTCGACCTAGG
CGAGTAAGCCTCCAAAACAGTGCGAGTTCTCTTCGCTGATGTGGAGGGAC
AGGGCGACAGAGACGTGGCCTACGACGCTCGATTAGCATCAGCCATTCTT
CCACTCACTAAGTGTGTCATCTTCAATTGGCGCGACAGTCTACAAGTGGA
CCGCATGCTCAACCTGCTAGGGGTCATGCAGAGGGCCGCCCATAACGTCG
ACCTAGGCGAGTAA
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