mRNA_H-paniculata_contig45.11320.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45.11320.1
Unique NamemRNA_H-paniculata_contig45.11320.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: D8LQ55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ55_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 1.450e-142
Identity = 226/265 (85.28%), Postives = 246/265 (92.83%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREEDGEEQPG-EADDEDVQDVQGXXXXXXXXXXSAQVRAHVPVPSQEKIKEAILKRKKLSLLKRLEGDD 1063
            MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFL+SEC+NL DAE+WRRDIIRETSK VH IQNAGAGEHKIRDLNDQINKLLRERTHWDKRI+ELGGPDYAA+APKSYDADGRELPGGGGY YFGAAK LPGVRELFHKSDVENPRRTRK MY++ITPDYYGYRDEEDG+LVAKEAV EKRKV+ AV++W+AEKRRR EDGEE+ G +ADDE       XXXXXXXXXXSA+VRAHVPVPSQ+ IKEAILKRKKL+LLKRL+G++
Sbjct:    1 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETSKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRILELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKGLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVMEKRKVQSAVSEWQAEKRRRLEDGEEEAGGDADDEXXXXXXXXXXXXXXXXXSAEVRAHVPVPSQDAIKEAILKRKKLTLLKRLDGEE 265          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: W7TA77_9STRA (Pre-mrna-splicing factor isy1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA77_9STRA)

HSP 1 Score: 280 bits (715), Expect = 1.090e-86
Identity = 163/272 (59.93%), Postives = 197/272 (72.43%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREEDGEEQPGEADDEDVQDVQGXXXXXXXXXX-------------SAQVRAHVPVPSQEKIKEAILKRKKLSLLKR 1048
            MARNEEKAQ M+NKW TMK+ +A  ++ RRPFL+S+C  L++AE WRR II+E +K+V E+QNAG GEH++RDLNDQINKLLRE+ HW KRI ELGGPDY    P++YDADGRELPGGGGY+YFGAAKDLPGV+ELF KS  +  RRTR  MY+ I PDYYGYRDEEDGIL+ KE  AEK  +  AV ++K  KR REE GE +  E           XXXXXXXXXX             SA V+AHVPVP QE I  A++++KK +LL +
Sbjct:    1 MARNEEKAQAMLNKWLTMKKDLATGDKERRPFLSSDCHVLSEAERWRRQIIKEVTKKVSEVQNAGLGEHRLRDLNDQINKLLREKYHWQKRIKELGGPDYNRIEPRAYDADGRELPGGGGYRYFGAAKDLPGVKELFQKSAPKEMRRTRGDMYKGIDPDYYGYRDEEDGILLEKEREAEKEAIAAAVRQFK--KRAREEKGEGEETEXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAVKAHVPVPCQEDIMTALMEKKKRALLSK 270          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: A0A7S2S7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7Y0_9STRA)

HSP 1 Score: 271 bits (693), Expect = 3.690e-83
Identity = 153/278 (55.04%), Postives = 188/278 (67.63%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAK---PERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREE----DGEEQPGEADDEDVQDVQ-----------GXXXXXXXXXXSAQVRAHVPVPSQEKIKEAILKRKKLSLLKRL 1051
            MARNEEKA  ++NKW TMK + AK   P+R  RP+LA+EC++L  AE WR D+I+E SK + EIQNAG GEH+IRDLNDQINKLLRE+ HW KRI ELGGPDY A  P+S+DADGRELPGGGGYKYFGAAK+LPGVRELF     + PRRTR  +Y+ ITPDYYGYRDE+D  L+ KEA+AEK  +EEA A+ +  KR+R      +GE            D             G          S   +AHVPVPSQ+++K+AIL  +K  LL++L
Sbjct:    1 MARNEEKAMSLLNKWVTMKSEFAKGGGPQR--RPYLATECDDLRQAERWRLDVIKEVSKGIGEIQNAGLGEHRIRDLNDQINKLLREKFHWQKRIRELGGPDYNAIEPRSFDADGRELPGGGGYKYFGAAKELPGVRELFQAEAPQRPRRTRAQIYKTITPDYYGYRDEDDEDLLRKEALAEKEAIEEADAQHQRLKRQRXXXXXXNGEXXXXXXXXXXXXDDAAAMAAAAHSNFGEAMARASAASSTVAKAHVPVPSQDEVKQAILDHRKQQLLQQL 276          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: A0A8K0KFN5_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KFN5_LADFU)

HSP 1 Score: 247 bits (631), Expect = 7.420e-74
Identity = 138/292 (47.26%), Postives = 187/292 (64.04%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREEDGEEQPGEADDEDV------------QDVQGXXXXXXXXXXSAQVRA----HVPVPSQEKIKEAILKRKKLSLLKRLEGDDVSE*FGRFRSVI 1099
            MARN EKA   + +W   + Q    E+ RRP+LASEC +L  AE WR  IIRE +K+V +IQNAG GE +IRDLND+INKLLRE+ HW+ +I ELGGPDYA   P+  D +G+E+PG  GYKYFGAAKDLPGVRELF +     PR+TR  + + I  DYYGYRD++DGIL+  E  AE++ + EA+A WKA+K    +DG E+  E ++E++             D +           S Q RA    HVPVPSQ++++ A+L+R+K  LL+R   DD+    G  +S++
Sbjct:    1 MARNAEKAMTTLARWRAAQIQDQGKEKERRPYLASECLDLAKAEKWRMQIIREIAKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEAQIRELGGPDYAKIGPRMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEQEPPLPPRKTRAELMKDIDADYYGYRDDDDGILIPMEQEAERKAIAEAIAVWKAKKEALLQDGVEEVPEEEEENIYAVDAEGYSDEGSDEEAVGADGDSSTISQQHRARFMAHVPVPSQKEVEAALLQRRKQELLERYASDDLVRQEGESKSLL 292          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: A0A8K1CPD6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPD6_PYTOL)

HSP 1 Score: 243 bits (621), Expect = 1.300e-73
Identity = 117/197 (59.39%), Postives = 150/197 (76.14%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKW-KAEKRR 859
            MARNEEKAQ ++N+WT+MK+  +   + RRP+LASEC+NL DAE WRR II+E SK+V +IQNAG GEH IRDLND+INK +RE+ HW+KRI+EL G DY  S P +YDADG  + GGGGYKYFGAAK+LPGVRELF K  +  P+R R+ MY++I PDYYG R+++D  ++  E  AE R  ++A+  W KAEK R
Sbjct:    1 MARNEEKAQSLLNRWTSMKQDFSDTFKNRRPYLASECDNLKDAERWRRQIIKEISKKVADIQNAGLGEHVIRDLNDEINKRIREKYHWEKRIIELNGSDYTRSQPSAYDADGTVVQGGGGYKYFGAAKNLPGVRELFEKEALPEPKRVREEMYKHIEPDYYGLREDDDAAMLEAEQAAETRLRKDAMEAWDKAEKER 197          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: UPI0003597C0E (pre-mRNA-splicing factor ISY1 homolog n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003597C0E)

HSP 1 Score: 246 bits (628), Expect = 1.760e-73
Identity = 140/284 (49.30%), Postives = 184/284 (64.79%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREEDGEEQPGEA---------------DDEDVQDVQGXXXXXXXXXXSAQVR--AHVPVPSQEKIKEAILKRKKLSLLKRLEGDDVSE 1072
            MARN EKA   + +W   +    K E+ RRP+LAS+C+NL +AE WRR II E S++V +IQNAG GE K+RDLND+INKLLRE+ HW+ RI+ELGGPDY  + PK  D+DG+E+PG  GYKYFGAAKDLPGVRELF +     PR+TR  + + I  DYYGYRDE+DGI+V +E  AE++ +   V +WK EK+ + + GE    EA               DD +VQ+V+               R  AHVPVPSQ++I+ A+L RKK+ LL+R   D + E
Sbjct:    1 MARNSEKAMTTLARWRASQVGEIK-EKDRRPYLASDCDNLHEAEKWRRQIIGEISRKVAQIQNAGLGEFKLRDLNDEINKLLREKGHWEDRILELGGPDYRKTGPKMLDSDGKEVPGNKGYKYFGAAKDLPGVRELFEQEPPPPPRKTRAELMKDIDADYYGYRDEDDGIIVPQELEAERKAISSKVREWK-EKQNKVKSGEMTEEEATGKEEELFTAAELAEDDLEVQEVEMEPTESTSDLDLDNQRFIAHVPVPSQKEIEAALLMRKKMELLQRYVSDGLQE 282          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: D0NZZ7_PHYIT (Pre-mRNA-splicing factor ISY1 n=19 Tax=Phytophthora TaxID=4783 RepID=D0NZZ7_PHYIT)

HSP 1 Score: 242 bits (617), Expect = 5.070e-73
Identity = 116/192 (60.42%), Postives = 148/192 (77.08%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKA 847
            MARNEEKAQ ++N+WT+MK+  A   + RRP+LAS+C+ L DAE WRR IIRE SK+V +IQNAG+ EH IRDLND+INK +RE+ HW++RI +LGGPDY+ S P+SYDADG  +   GGYKYFGAAK+LPGVRELF K DVE  +RTR+ MY++I PDYYG+RD++D   +  E  AEKR  + A+  W A
Sbjct:    1 MARNEEKAQSLLNRWTSMKQDFADTFKNRRPYLASQCDTLKDAERWRRQIIREISKKVADIQNAGSSEHVIRDLNDEINKRIREKRHWERRIAQLGGPDYSKSQPQSYDADGTPVSSVGGYKYFGAAKNLPGVRELFQKEDVEPRKRTRQHMYKHIKPDYYGFRDDDDEQQLKDEDEAEKRLRQRAMDGWDA 192          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: A0A6P4ZB62_BRABE (pre-mRNA-splicing factor ISY1 homolog n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZB62_BRABE)

HSP 1 Score: 244 bits (623), Expect = 6.190e-73
Identity = 144/274 (52.55%), Postives = 184/274 (67.15%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREEDGEEQPGEADDEDVQDVQGXXXXXXXXXXSAQVR-------AHVPVPSQEKIKEAILKRKKLSLLKRLEGDDVSE 1072
            MARN EKA   + +W  M+    K +  RRPFLASE  +L  AE WR  IIRE +K+V +IQNAG GE +IRDLND+INKLLRE+ HW++RI ELGGPDY    PK  D +G+E+PG  GYKYFGAAKDLPGVRELF +     PRRTR  +Y+ +  DYYGYRDE+DG+LV  E   EK  V EAVA+WK++K    E G  +  E ++ED+  V  XXXXXX      +         AHVPVPSQ++++EA+L+RKK+ LL++   D + E
Sbjct:    1 MARNAEKAMTTLARWRNMQMDQGKVKE-RRPFLASEENDLGKAEKWRHQIIREVAKKVSQIQNAGLGEFRIRDLNDEINKLLREKKHWEERIKELGGPDYERVGPKMLDQEGKEVPGNRGYKYFGAAKDLPGVRELFEQEPPAPPRRTRAELYKEVDADYYGYRDEDDGVLVPLEQDLEKEVVAEAVAEWKSQK----EAGLLKDVE-EEEDIYAVXXXXXXXXTGESKMETEEGQQQFIAHVPVPSQKEVEEALLRRKKMELLQKYASDSLLE 268          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: A0A2C9JS12_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JS12_BIOGL)

HSP 1 Score: 244 bits (623), Expect = 9.640e-73
Identity = 137/284 (48.24%), Postives = 184/284 (64.79%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREEDGE----------------EQPGEADDEDVQDVQGXXXXXXXXXXSAQ-VRAHVPVPSQEKIKEAILKRKKLSLLKRLEGDDVSE 1072
            MARN EKA   + +W   +    K E+ RRP+LAS+C+NL +AE WRR II E S++V +IQNAG GE K+RDLND+INKLLRE+ HW+ RIVEL GPDY  + PK  D+DG+E+PG  GYKYFGAAKDLPGVRELF +     PR+TR  + + I  DYYGYRDE+DGI++  EA  EK+ ++  V +WK EK+ + + GE                E   E DDE+ + ++             Q   AHVPVPSQ++I++A+L RKK+ L++R   D++ E
Sbjct:    1 MARNSEKAMTTLARWRASQVGGIK-EKERRPYLASDCDNLQEAEKWRRQIIGEISRKVAQIQNAGLGEFKLRDLNDEINKLLREKGHWEDRIVELNGPDYKKTGPKMLDSDGKEVPGNKGYKYFGAAKDLPGVRELFDQEPAPAPRKTRAELMKDIDADYYGYRDEDDGIIIPLEAEVEKQVIKTKVQEWK-EKQNKVQTGEMTHEEAHGAEEELFSKEALAEKDDEEDESLKPSTSKDFYREFDKQHFIAHVPVPSQKEIEQALLHRKKMELIQRYASDNLQE 282          
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Match: A0A6A4WR75_AMPAM (Pre-mRNA-splicing factor ISY1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WR75_AMPAM)

HSP 1 Score: 244 bits (623), Expect = 1.030e-72
Identity = 138/278 (49.64%), Postives = 178/278 (64.03%), Query Frame = 2
Query:  272 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDIIRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRKAMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREEDG-----------EEQPGEADDEDVQDVQGXXXXXXXXXXSAQVRAHVPVPSQEKIKEAILKRKKLSLLKRLEGDDVSE 1072
            MARN EKA   + +W     + A PER RRP+LASEC+ L DAE WR  I+RE +++V +IQNAG GE +IRDLND+INKLLRE+ HW+ RI ELGGPDYA + PK  D +GRE+PG  GY+YFGAA+DLPGVRELF +     PR+TR  + + I  DYYG+ D+EDG+LV +E   E+     AVA W A+ RRR+E G           EE P +ADD D +               A+  AHVPVPSQ +++ A+++RKK  LL R   D + E
Sbjct:    1 MARNAEKAMTTLARWRQAHSEDA-PERARRPYLASECDQLPDAERWRNQIVREVARKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEARIKELGGPDYARTGPKMLDREGREVPGNRGYRYFGAARDLPGVRELFEQEPPPPPRKTRAELMKDIDADYYGFLDDEDGVLVPRERQQERL----AVAAWLADWRRRKEAGLLGDDADPAEVEEAPLDADDSDEE-------AERHASAPARFVAHVPVPSQREVEAALVERKKRELLARYASDALRE 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45.11320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ55_ECTSI1.450e-14285.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TA77_9STRA1.090e-8659.93Pre-mrna-splicing factor isy1 n=1 Tax=Nannochlorop... [more]
A0A7S2S7Y0_9STRA3.690e-8355.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K0KFN5_LADFU7.420e-7447.26Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A8K1CPD6_PYTOL1.300e-7359.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0003597C0E1.760e-7349.30pre-mRNA-splicing factor ISY1 homolog n=1 Tax=Aply... [more]
D0NZZ7_PHYIT5.070e-7360.42Pre-mRNA-splicing factor ISY1 n=19 Tax=Phytophthor... [more]
A0A6P4ZB62_BRABE6.190e-7352.55pre-mRNA-splicing factor ISY1 homolog n=3 Tax=Bran... [more]
A0A2C9JS12_BIOGL9.640e-7348.24Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A6A4WR75_AMPAM1.030e-7249.64Pre-mRNA-splicing factor ISY1 n=2 Tax=Amphibalanus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45contigH-paniculata_contig45:19892..24732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score420.2
Seed ortholog evalue7.1e-115
Seed eggNOG ortholog2880.D8LQ55
Preferred nameISY1
KEGG koko:K10352,ko:K12870
KEGG Pathwayko03040,ko04530,map03040,map04530
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000350,GO:0000375,GO:0000377,GO:0000389,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0070013,GO:0071008,GO:0071012,GO:0071013,GO:0071014,GO:0071020,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for second transesterification step
EggNOG OGsKOG3068@1,KOG3068@2759
Ec32 ortholog descriptionIsy1-like splicing
Ec32 orthologEc-26_006080.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04147,ko04812
Exons3
Model size1801
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45.11320.1prot_H-paniculata_contig45.11320.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45 20618..24461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930350.7609372-UTR-H-paniculata_contig45:19891..206171622930350.7609372-UTR-H-paniculata_contig45:19891..20617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45 19892..20617 -
1691481253.0188365-UTR-H-paniculata_contig45:19891..206171691481253.0188365-UTR-H-paniculata_contig45:19891..20617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45 19892..20617 -
1622930350.8285093-UTR-H-paniculata_contig45:24461..247321622930350.8285093-UTR-H-paniculata_contig45:24461..24732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45 24462..24732 -
1691481253.0651534-UTR-H-paniculata_contig45:24461..247321691481253.0651534-UTR-H-paniculata_contig45:24461..24732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45 24462..24732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930350.7754314-CDS-H-paniculata_contig45:20617..207701622930350.7754314-CDS-H-paniculata_contig45:20617..20770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45 20618..20770 -
1691481253.0371034-CDS-H-paniculata_contig45:20617..207701691481253.0371034-CDS-H-paniculata_contig45:20617..20770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45 20618..20770 -
1622930350.7939923-CDS-H-paniculata_contig45:21857..220171622930350.7939923-CDS-H-paniculata_contig45:21857..22017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45 21858..22017 -
1691481253.0471292-CDS-H-paniculata_contig45:21857..220171691481253.0471292-CDS-H-paniculata_contig45:21857..22017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45 21858..22017 -
1622930350.813763-CDS-H-paniculata_contig45:23970..244611622930350.813763-CDS-H-paniculata_contig45:23970..24461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45 23971..24461 -
1691481253.0574543-CDS-H-paniculata_contig45:23970..244611691481253.0574543-CDS-H-paniculata_contig45:23970..24461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45 23971..24461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45.11320.1

>prot_H-paniculata_contig45.11320.1 ID=prot_H-paniculata_contig45.11320.1|Name=mRNA_H-paniculata_contig45.11320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLASECENLTDAEMWRRDI
IRETSKRVHEIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDY
AASAPKSYDADGRELPGGGGYKYFGAAKDLPGVRELFHKSDVENPRRTRK
AMYEYITPDYYGYRDEEDGILVAKEAVAEKRKVEEAVAKWKAEKRRREED
GEEQPGEADDEDVQDVQGQAAAAASAATSAQVRAHVPVPSQEKIKEAILK
RKKLSLLKRLEGDDVSE*
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mRNA from alignment at H-paniculata_contig45:19892..24732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45.11320.1 ID=mRNA_H-paniculata_contig45.11320.1|Name=mRNA_H-paniculata_contig45.11320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4841bp|location=Sequence derived from alignment at H-paniculata_contig45:19892..24732- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCTGGAGTTGCTACCACAACTAGTGCCCCTGGGTGTCTTTGGAATAT ATGTAAAAAAAAAATTATCGTGTCGTGGAAAGGAAAGAAGACCATCTAAG ACCGTGAAAATTACGAGAAGTGTTTTCCTCTCTCCACCTGAGCGCCCCTG TCAACAAAGGACTTGTCTCTATAACAGCGATCATCCGTCTAGCGATCCAT CTGCCTAGGTCGCCTCGCCTCCCTTATTATTCGCTTGTCCTACAAGGGCA ACGCCCATCCTATAGGAAGCCATGGCGCGTAATGAGGAGAAAGCGCAGAT GATGATGAACAAATGGACAACCATGAAGGAGCAAATGGCCAAGCCAGAGC GAGGGCGGCGACCTTTCTTGGCTTCCGAGTGTGAAAACTTGACAGACGCC GAGATGTGGCGTCGGGACATCATACGCGAGACCAGCAAACGGGTTCACGA AATCCAAAACGCAGGAGCCGGAGAGCATAAAATACGGGATCTCAACGATC AAATCAACAAGCTTTTGCGAGAGCGAACGCACTGGGACAAGCGAATAGTG GAGCTAGGCGGGCCAGATTATGCAGCTAGTGCGCCGAAATCGTACGATGC AGATGGGAGAGAGTTACCTGGAGGAGGGGGTTACAAGTACTTCGGAGCGG CAAAGGATTTACCAGGGGTGCGCGAACTGTTCCATAAGTCGGATGTGGAG AATCCGCGGCGTACTCGAAAGGCTATGTACGAGTACATCACCCCCGACTA CTACGGCTACAGGTGGGTTCAGACGGGGAACGTGCAAGTCTACCATAAAT TACATGTGCTCAAATCCATCGTTTTGGCCAATTGTCTGAAGCCCTGGAGA TGTCTCACGTTGGTAGGTTATTGGCTGCTACAGTATGGCACCAGGTAAAG GTGCCTGCTTGTTGTTGTTTTAGGGGATTCGAGGTCGTGTTGACTCTTTC AAATCAGCAACCTTGCATTGCGACTTCCGAACCGCGGTGTTTGACAATTC CGCGTTGGAAAGAGGGGGAGAGGGGTTTGGCAGAGGGGGGTACCGAATTT TTACGGACATAATTGCTTTGGCTGGGTTTAGATCAGACCCACATGTCGAC AAACATGTGGCGAATAGTACAGCGGATGGCAACGTGTTTCGTCATCTGTG TAATTTATAATATCAAATGTCGACGATAGGTGTAAAAGGGTATCGGCCCT TTGAACGATATGTACACATGTCAAGGGCTGGCGCAGTAGCTAGAGCGTCG TGTGCTTGATATACAACTGGTGCAGCTGACAAACTGCAGCTCACATTTCG GTTTCATCGAACGGTGGTATCCAGCTGGACAATGCAAACAGCATGGGATC GCCAATTTGCGCCCGGCGACAGAAGAAATGGACAATACTGCTGCATGCCG CAAAGACAGTTGGTGTACTACTGCATGCAGCACCATTTCTGCAGCCTACA AGAAAAGGGGGGGAAGAGAGCTGGCGGGTACCAGCATATCCTGAGAGTTC CGTAACGAATGATAGCCGCTGGCCGCTGGATGTGTGGCCTCCTGTCATAA GTAATGGTACCCACAGGCACATCAGCAGGCAGTCTGCCACAGTCATACCA ATTGGGACATGAGAACATGACTGATATCCATGGTAGTTGGTAAGCAGGTA CTGGGCTTTCTGGAACAAAATTGTTTCTTCCTATCAGCTTATTCTCATTA TTTTTTCCTGGTGTAAGGAGGTTATACACCTTTTACTTCTTCAGGAGGCT AGGACTCTTGTGTTGGCCGCCTTACGCTTCTAAGTGTTTTATCTCATTTT CGTGTCCTCAATAAATATTCGCTTTTAGTGAGGGGGCGACTGTGTCCGTC TTAGGCATTTTCCAATATTCATTGATTGTAGTGTACTGCAAAATGCTTAA GCGGGAGCTAGAGACAGTTTGAAGTTGCGATTTATTCGTGTTTGTTCCGT TTTCGCCGTTTCAGTCCGGTTATTTTACTCCGTCTCGGGGTGGCCGAAAG TAACCTCAGAACACCCTGCCGTTAACTGCAGACGGGTTTCCACCGTGAAC TATTCGCTCGTTCGTCTCAGATCACCTAGCATGTACCTAGGTGCAAGTAC TGTAGGTGAAGGGGATAATCAATACACCACTAATGACGGGTTTTTTTTCA AAAATCGTCATCACACAGGGTTAACAAAGGATACCACACCACTTAGCTAC AAGCGCGGCGTGCGCCTGTCAGACCCTTGACGTCGGAACGATCCACGTAA TGGATAGCCATGTATTTCTTCGCGTCAAGTGGACATGATTCACCTTTATT GGGAATACTGTTGCGATGACGAGAGGAACTCAGATACCTTCTTGCTGAAA ATTTGTTGGGTTACCTCTTATATTGGTAGCAACAATAATGGTCTTCGTGC GTAGGTAACAGCGTTGAGGAATCAGATAATTGCATTTCGTCGAGAACAGG GTACATACTGCATCGACGACGGAAAGCATACTCCATACCAACATATCACA CCCCCTGTTATCACCCTCCCGCAAGAATCACGTAATTCTCAGCGTGCGCT ATCACACCCTCCTATCGGGGATAAGCCCCGCCTCCATCCCATCTTTTATT TTTTATTTTTGTCCGGTGTGTTATCTCCCGTCACCTACGGTAACTCTATC CGGACAGTCCGCCTGACGTGTCATGTATATTTTTCGTTGCCACCCTGATT GTTGAATGACGCCAGGGACGAGGAGGATGGTATTCTTGTGGCAAAGGAGG CCGTTGCGGAGAAGCGAAAAGTAGAAGAGGCCGTGGCGAAGTGGAAAGCG GAGAAACGTCGGCGGGAGGAAGATGGAGAGGAGCAGCCGGGGGAGGCTGA CGACGAGGACGTACAGGACGTTCAGGTGCGGATTTTGTGATGGGTCACAA CAGAGCCTCCTGCGGTCCAGATCTCGTTCCTGACATCGGGCCATACACAC TTAATATGGTGGAAGGAATAGGTTGCAGAGGTTGTTCAGTCGTGTGAATT TACAGTGGTTCACGGGACCTGAGGATGTGTCTGATTTTTCATCGTGAATG ACCAATTCAGTCGGGTGAGCCGATTCGAACCGTGCATGTCAAGATCCCTG TTGGTTTGCCTTTTTGTAGCATGACCCGTTTTTGCGATACGAATGCAACC TTAGCAAGGAAGCACCACTTTTTCTGTTGGGAACATATGTCGTGTTAGTC CTTGAAGCTTGGACCTTGAGTTGCAAATGCACACCCGCTTGGGTTGGGAA TGCGTCGCGCTCCCTAGTTACCCGGTTCGTGGGACTTCTTGCTGTTTAGT TGCGGTCTCCAACACAATTTTGCACATGAAGCTGTGATCGCGTGGAGCGT CGAAACATATGGTTGATTGCCCAGTATGAATACCTGTTCATTTAGAACCA GGCGGAGGCTATCTATAAGGATACTGTATTTGCCCTCGCCGGTTTTCGGG CTGGACACTCGTCCTAAGTCCAAATGCTACGGTAAGCATCACAGAGGAAA TGGGATCAGCGGCGAACGCCTGCAGTGTTAAGCACTCTGTGCGACCTTGT TTGGATGCGAATAGTGTGGACATATTCAAATGCGTCGCATCATATGTGTC CATCTCACCTGTTACTGGCGTATCGCTCTGGGTTTTCATACGGCAGCAGT GTGTACTATCTTTTGCAGGTATGCGTGCTCAAGAAAGAACAAGTCACTAA TGTCAAAATAGCGCTGTGCAATACTAGTACTACTAGAACGTTGAACTTTC GGCCGCTTTTGCGTGTTCTGTGAAGCAAGAGCATGTTAACACCAATCCAT ATGCCATTCCTTGATATCACTTGGTTCCCATAAAAAAACGGCTAAATGAC TTGGTACATATATTGGTCGAAACTCTCCCAAGCCCTTTGTGCCGGCGATT TATCTGCATTGTTTTGCCCTCGATTTGTCGCCTGTCTGTCATTCGACTTT TCTCTGCCTAAGGGGCAAGCGGCGGCTGCGGCCTCCGCGGCAACCTCGGC GCAGGTGCGGGCACACGTACCCGTGCCATCGCAGGAGAAGATCAAAGAAG CCATTCTGAAGAGGAAAAAGTTGTCTCTACTGAAGCGTCTAGAAGGAGAC GACGTGTCAGAGTAATTTGGTAGATTCCGCAGCGTCATTTTGTCTTTTAT CCACAGGACGGGGTTTGGGCATAATACGACCGTATATGAGCAAAGTTTTG CCCATGGGGTGTACAAAGTTGACTGGGGCAAGTTGCAGAAAATAATCCAA CTGTGAAACCTTCAAGTGTCCAATCAAATGTGTAGGTATATGGGACAGTG TATATAACGCTCGCGCAGCAACACATGGACTGTACACCACATGCCGCAAG ATGCTGATTTCAGTGCAGAAGAGCCCAACATACACGCCGACCCCACGTTG GCCGTACAAACTGCTGCTGCGCACTTTTAAAGAGCTTGCTGCGTTCATGC CGTTCGGCCGAAGAGTGGAAGTAGCGGAAAGGGTTTTGCCTTAGCCTTCC GGGGGTTAAAAAAAAAAAAATGCCGTTCGGCCGCTCTGGAGGGTTAAAAG CACATATCTGGATGCGGCAAACGCTGGGGGTGCATGTACTGTGCGCACGG ACTCCTCATGTAGAGCTGCGGATTTAGGTACAGAAAGTACATGCCAAAGA ATCCTCTCCCCAGACATATTCGAACTTGAAGCGTTGAGCATTACGACGGA AGTAAAACAAGAGTTTGGCAGAGTCTCAAATGTGCGGATATATAGAATAA AGTGATGTTCCCTGTTTCTTTCGTTTTACTGCTATTTACTCAGAGCATTC GTAGACGGTCTGCGGCATATGGGATATTTGTGCTGATCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig45:19892..24732-

>mRNA_H-paniculata_contig45.11320.1 ID=mRNA_H-paniculata_contig45.11320.1|Name=mRNA_H-paniculata_contig45.11320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at H-paniculata_contig45:19892..24732- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGTAATGAGGAGAAAGCGCAGATGATGATGAACAAATGGACAAC
CATGAAGGAGCAAATGGCCAAGCCAGAGCGAGGGCGGCGACCTTTCTTGG
CTTCCGAGTGTGAAAACTTGACAGACGCCGAGATGTGGCGTCGGGACATC
ATACGCGAGACCAGCAAACGGGTTCACGAAATCCAAAACGCAGGAGCCGG
AGAGCATAAAATACGGGATCTCAACGATCAAATCAACAAGCTTTTGCGAG
AGCGAACGCACTGGGACAAGCGAATAGTGGAGCTAGGCGGGCCAGATTAT
GCAGCTAGTGCGCCGAAATCGTACGATGCAGATGGGAGAGAGTTACCTGG
AGGAGGGGGTTACAAGTACTTCGGAGCGGCAAAGGATTTACCAGGGGTGC
GCGAACTGTTCCATAAGTCGGATGTGGAGAATCCGCGGCGTACTCGAAAG
GCTATGTACGAGTACATCACCCCCGACTACTACGGCTACAGATGGCGCGT
AATGAGGAGAAAGCGCAGATGATGATGAACAAATGGACAACCATGAAGGA
GCAAATGGCCAAGCCAGAGCGAGGGCGGCGACCTTTCTTGGCTTCCGAGT
GTGAAAACTTGACAGACGCCGAGATGTGGCGTCGGGACATCATACGCGAG
ACCAGCAAACGGGTTCACGAAATCCAAAACGCAGGAGCCGGAGAGCATAA
AATACGGGATCTCAACGATCAAATCAACAAGCTTTTGCGAGAGCGAACGC
ACTGGGACAAGCGAATAGTGGAGCTAGGCGGGCCAGATTATGCAGCTAGT
GCGCCGAAATCGTACGATGCAGATGGGAGAGAGTTACCTGGAGGAGGGGG
TTACAAGTACTTCGGAGCGGCAAAGGATTTACCAGGGGTGCGCGAACTGT
TCCATAAGTCGGATGTGGAGAATCCGCGGCGTACTCGAAAGGCTATGTAC
GAGTACATCACCCCCGACTACTACGGCTACAGGGACGAGGAGGATGGTAT
TCTTGTGGCAAAGGAGGCCGTTGCGGAGAAGCGAAAAGTAGAAGAGGCCG
TGGCGAAGTGGAAAGCGGAGAAACGTCGGCGGGAGGAAGATGGAGAGGAG
CAGCCGGGGGAGGCTGACGACGAGGACGTACAGGACGTTCAGGGACGAGG
AGGATGGTATTCTTGTGGCAAAGGAGGCCGTTGCGGAGAAGCGAAAAGTA
GAAGAGGCCGTGGCGAAGTGGAAAGCGGAGAAACGTCGGCGGGAGGAAGA
TGGAGAGGAGCAGCCGGGGGAGGCTGACGACGAGGACGTACAGGACGTTC
AGGGGCAAGCGGCGGCTGCGGCCTCCGCGGCAACCTCGGCGCAGGTGCGG
GCACACGTACCCGTGCCATCGCAGGAGAAGATCAAAGAAGCCATTCTGAA
GAGGAAAAAGTTGTCTCTACTGAAGCGTCTAGAAGGAGACGACGTGTCAG
AGTAAGGGCAAGCGGCGGCTGCGGCCTCCGCGGCAACCTCGGCGCAGGTG
CGGGCACACGTACCCGTGCCATCGCAGGAGAAGATCAAAGAAGCCATTCT
GAAGAGGAAAAAGTTGTCTCTACTGAAGCGTCTAGAAGGAGACGACGTGT
CAGAGTAA
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