mRNA_H-paniculata_contig44999.11317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44999.11317.1
Unique NamemRNA_H-paniculata_contig44999.11317.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 88.6 bits (218), Expect = 5.280e-18
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   28 DPKLLHERLGHVRDLPTVARQQDIR-------FSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPM-DKSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFK 354
            DP + H RLGH+ +  ++ + Q  +       FS K GVC  C  G + ++P +  +  R   PLEL+HTD+ GPM ++S GG ++ I F+DDYSRMC V  LR KS  +   K+FK
Sbjct:  370 DPWIWHRRLGHL-NFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 485          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 88.6 bits (218), Expect = 5.300e-18
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   28 DPKLLHERLGHVRDLPTVARQQDIR-------FSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPM-DKSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFK 354
            DP + H RLGH+ +  ++ + Q  +       FS K GVC  C  G + ++P +  +  R   PLEL+HTD+ GPM ++S GG ++ I F+DDYSRMC V  LR KS  +   K+FK
Sbjct:   62 DPWIWHRRLGHL-NFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 177          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 84.0 bits (206), Expect = 2.950e-17
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   37 LLHERLGHVRDLPTVARQQD-IRFSG--KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
            L H+RLGH   L  +    + ++FS   +L  C AC  G  ++QP K   E R+   L+L+H+D+ GPM  +S GG ++ + F+DD+SR CKV  ++ KSE L   K+F+R  S
Sbjct:   56 LWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFS 169          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A6S7J544_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J544_PARCT)

HSP 1 Score: 81.6 bits (200), Expect = 2.090e-16
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   31 PKLLHERLGHVR--DLPTVARQQ-----DIRFSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
            P L H+R+ H+    +  +A ++     DI  +GKL  C AC +G A + P K   E +++  LELVH+D+AGPM  +SFGG ++ + F+DDYSR   V  ++ KSE L   K+++  V+
Sbjct:   25 PDLWHQRMAHLNAGQMKIMASKELITGTDIPGTGKLSFCVACAEGKAHRAPFKPVGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVHPMKYKSEVLEKFKEWEAAVT 144          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE)

HSP 1 Score: 84.0 bits (206), Expect = 2.110e-16
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   37 LLHERLGHVRDLPTVARQQD-IRFSG--KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
            L H+RLGH   L  +    + ++FS   +L  C AC  G  ++QP K   E R+   L+L+H+D+ GPM  +S GG ++ + F+DD+SR CKV  ++ KSE L   K+F+R  S
Sbjct:  427 LWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFS 540          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 3.130e-16
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   31 PKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
            P+L H+R GH+ +   + +  +I  +G      K GVC+ CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KS++L  LK++ +D++
Sbjct:    1 PELWHQRFGHI-NYEYLRQMGEIDDTGVPKGIKKPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMN 118          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.430e-16
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   22 VMDPKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
            V  P+L H+R GH+ +   + +  +I  +G      K GVC  CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KSE+L  LK++ +D++
Sbjct:   18 VYSPELWHQRFGHM-NYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 138          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.360e-16
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   22 VMDPKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
            V  P+L H+R GH+ +   + +  +I  +G      K G+C+ CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KSE+L  LK++ +D++
Sbjct:   68 VSSPELWHQRFGHI-NYEYLRQMGEIDDTGVPKGIKKPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 188          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.610e-16
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   22 VMDPKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
            V  P+L H+R GH+ +   + +  +I  +G      K GVC  CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KSE+L  LK++ +D++
Sbjct:   64 VSTPELWHQRFGHI-NYEYLKQMGEIDDTGVPKGIKKPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 184          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.360e-15
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   22 VMDPKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
            V  P+L H+R GH+ +   + +  +I  +G      K GVC  CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KSE+L  LK++ +D++
Sbjct:   18 VYAPELWHQRFGHM-NYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y1REW6_PRUDU5.280e-1841.03Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU5.300e-1841.03BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
A0A0S7KIZ2_9TELE2.950e-1739.47POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A6S7J544_PARCT2.090e-1638.33Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0S7KIW8_9TELE2.110e-1639.47POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
K8YS61_NANGC3.130e-1638.66Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA3.430e-1639.34Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7T9I7_9STRA5.360e-1638.52Copia-like retrotransposable element n=1 Tax=Nanno... [more]
W7T174_9STRA5.610e-1639.34Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TIQ5_9STRA1.360e-1539.34Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44999contigH-paniculata_contig44999:915..1283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.8
Seed ortholog evalue3.7e-12
Seed eggNOG ortholog225117.XP_009362851.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs389M0@33090,3GYSF@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930350.1728036-UTR-H-paniculata_contig44999:914..9381622930350.1728036-UTR-H-paniculata_contig44999:914..938Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44999 915..938 +
1691481252.7944186-UTR-H-paniculata_contig44999:914..9381691481252.7944186-UTR-H-paniculata_contig44999:914..938Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44999 915..938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930350.1930518-CDS-H-paniculata_contig44999:938..12831622930350.1930518-CDS-H-paniculata_contig44999:938..1283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44999 939..1283 +
1691481252.808933-CDS-H-paniculata_contig44999:938..12831691481252.808933-CDS-H-paniculata_contig44999:938..1283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44999 939..1283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44999.11317.1prot_H-paniculata_contig44999.11317.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44999 939..1283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44999.11317.1

>prot_H-paniculata_contig44999.11317.1 ID=prot_H-paniculata_contig44999.11317.1|Name=mRNA_H-paniculata_contig44999.11317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MDPKLLHERLGHVRDLPTVARQQDIRFSGKLGVCSACEKGNASKQPVKKY
REERTSEPLELVHTDIAGPMDKSFGGCRFAIIFVDDYSRMCKVCTLRQKS
EALWGLKQFKRDVSR
back to top

mRNA from alignment at H-paniculata_contig44999:915..1283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44999.11317.1 ID=mRNA_H-paniculata_contig44999.11317.1|Name=mRNA_H-paniculata_contig44999.11317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig44999:915..1283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAATGAGAAGAGGCAACAGGTGATGGACCCCAAGTTACTACACGAGCG ACTTGGGCATGTTCGAGACCTTCCCACAGTCGCGCGGCAACAAGACATAA GGTTCAGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAACGCC TCGAAGCAGCCCGTAAAAAAGTATCGAGAAGAGCGGACGAGCGAGCCGTT AGAGCTGGTGCACACCGACATAGCCGGACCGATGGACAAGTCCTTCGGAG GATGCCGCTTCGCCATCATCTTCGTCGACGACTACAGCAGAATGTGCAAA GTCTGTACCTTGCGACAAAAGTCGGAGGCGCTATGGGGCCTGAAGCAATT CAAGAGAGACGTATCGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig44999:915..1283+

>mRNA_H-paniculata_contig44999.11317.1 ID=mRNA_H-paniculata_contig44999.11317.1|Name=mRNA_H-paniculata_contig44999.11317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig44999:915..1283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCCCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGACCTTCC
CACAGTCGCGCGGCAACAAGACATAAGGTTCAGCGGGAAGCTCGGTGTCT
GCTCGGCGTGTGAGAAGGGGAACGCCTCGAAGCAGCCCGTAAAAAAGTAT
CGAGAAGAGCGGACGAGCGAGCCGTTAGAGCTGGTGCACACCGACATAGC
CGGACCGATGGACAAGTCCTTCGGAGGATGCCGCTTCGCCATCATCTTCG
TCGACGACTACAGCAGAATGTGCAAAGTCTGTACCTTGCGACAAAAGTCG
GAGGCGCTATGGGGCCTGAAGCAATTCAAGAGAGACGTATCGAGGATGGA
CCCCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGACCTTCCCACAG
TCGCGCGGCAACAAGACATAAGGTTCAGCGGGAAGCTCGGTGTCTGCTCG
GCGTGTGAGAAGGGGAACGCCTCGAAGCAGCCCGTAAAAAAGTATCGAGA
AGAGCGGACGAGCGAGCCGTTAGAGCTGGTGCACACCGACATAGCCGGAC
CGATGGACAAGTCCTTCGGAGGATGCCGCTTCGCCATCATCTTCGTCGAC
GACTACAGCAGAATGTGCAAAGTCTGTACCTTGCGACAAAAGTCGGAGGC
GCTATGGGGCCTGAAGCAATTCAAGAGAGACGTATCGAGG
back to top