mRNA_H-paniculata_contig44999.11317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU) HSP 1 Score: 88.6 bits (218), Expect = 5.280e-18 Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 1
Query: 28 DPKLLHERLGHVRDLPTVARQQDIR-------FSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPM-DKSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFK 354
DP + H RLGH+ + ++ + Q + FS K GVC C G + ++P + + R PLEL+HTD+ GPM ++S GG ++ I F+DDYSRMC V LR KS + K+FK
Sbjct: 370 DPWIWHRRLGHL-NFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 485
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU) HSP 1 Score: 88.6 bits (218), Expect = 5.300e-18 Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 1
Query: 28 DPKLLHERLGHVRDLPTVARQQDIR-------FSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPM-DKSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFK 354
DP + H RLGH+ + ++ + Q + FS K GVC C G + ++P + + R PLEL+HTD+ GPM ++S GG ++ I F+DDYSRMC V LR KS + K+FK
Sbjct: 62 DPWIWHRRLGHL-NFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 177
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE) HSP 1 Score: 84.0 bits (206), Expect = 2.950e-17 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 37 LLHERLGHVRDLPTVARQQD-IRFSG--KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
L H+RLGH L + + ++FS +L C AC G ++QP K E R+ L+L+H+D+ GPM +S GG ++ + F+DD+SR CKV ++ KSE L K+F+R S
Sbjct: 56 LWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFS 169
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A6S7J544_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J544_PARCT) HSP 1 Score: 81.6 bits (200), Expect = 2.090e-16 Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 31 PKLLHERLGHVR--DLPTVARQQ-----DIRFSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
P L H+R+ H+ + +A ++ DI +GKL C AC +G A + P K E +++ LELVH+D+AGPM +SFGG ++ + F+DDYSR V ++ KSE L K+++ V+
Sbjct: 25 PDLWHQRMAHLNAGQMKIMASKELITGTDIPGTGKLSFCVACAEGKAHRAPFKPVGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVHPMKYKSEVLEKFKEWEAAVT 144
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE) HSP 1 Score: 84.0 bits (206), Expect = 2.110e-16 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 37 LLHERLGHVRDLPTVARQQD-IRFSG--KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
L H+RLGH L + + ++FS +L C AC G ++QP K E R+ L+L+H+D+ GPM +S GG ++ + F+DD+SR CKV ++ KSE L K+F+R S
Sbjct: 427 LWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFS 540
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 80.9 bits (198), Expect = 3.130e-16 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 31 PKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
P+L H+R GH+ + + + +I +G K GVC+ CE+ +K+ ER EPLELVHTD+ GP++ +S GG R+AI F DDY+R V ++ KS++L LK++ +D++
Sbjct: 1 PELWHQRFGHI-NYEYLRQMGEIDDTGVPKGIKKPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMN 118
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.430e-16 Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 22 VMDPKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
V P+L H+R GH+ + + + +I +G K GVC CE+ +K+ ER EPLELVHTD+ GP++ +S GG R+AI F DDY+R V ++ KSE+L LK++ +D++
Sbjct: 18 VYSPELWHQRFGHM-NYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 138
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.360e-16 Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 22 VMDPKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
V P+L H+R GH+ + + + +I +G K G+C+ CE+ +K+ ER EPLELVHTD+ GP++ +S GG R+AI F DDY+R V ++ KSE+L LK++ +D++
Sbjct: 68 VSSPELWHQRFGHI-NYEYLRQMGEIDDTGVPKGIKKPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 188
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.610e-16 Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 22 VMDPKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
V P+L H+R GH+ + + + +I +G K GVC CE+ +K+ ER EPLELVHTD+ GP++ +S GG R+AI F DDY+R V ++ KSE+L LK++ +D++
Sbjct: 64 VSTPELWHQRFGHI-NYEYLKQMGEIDDTGVPKGIKKPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 184
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.360e-15 Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 22 VMDPKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 366
V P+L H+R GH+ + + + +I +G K GVC CE+ +K+ ER EPLELVHTD+ GP++ +S GG R+AI F DDY+R V ++ KSE+L LK++ +D++
Sbjct: 18 VYAPELWHQRFGHM-NYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 138 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44999.11317.1 >prot_H-paniculata_contig44999.11317.1 ID=prot_H-paniculata_contig44999.11317.1|Name=mRNA_H-paniculata_contig44999.11317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp MDPKLLHERLGHVRDLPTVARQQDIRFSGKLGVCSACEKGNASKQPVKKYback to top mRNA from alignment at H-paniculata_contig44999:915..1283+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44999.11317.1 ID=mRNA_H-paniculata_contig44999.11317.1|Name=mRNA_H-paniculata_contig44999.11317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig44999:915..1283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44999:915..1283+ >mRNA_H-paniculata_contig44999.11317.1 ID=mRNA_H-paniculata_contig44999.11317.1|Name=mRNA_H-paniculata_contig44999.11317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig44999:915..1283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |