prot_H-paniculata_contig44999.11317.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig44999.11317.1
Unique Nameprot_H-paniculata_contig44999.11317.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length115
Homology
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 89.7 bits (221), Expect = 1.550e-18
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 0
Query:    2 DPKLLHERLGHVRDLPTVARQQDIR------FSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPM-DKSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFK 110
            DP + H RLGH+        QQ         FS K GVC  C  G + ++P +  +  R   PLEL+HTD+ GPM ++S GG ++ I F+DDYSRMC V  LR KS  +   K+FK
Sbjct:  370 DPWIWHRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 485          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 89.7 bits (221), Expect = 1.550e-18
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 0
Query:    2 DPKLLHERLGHVRDLPTVARQQDIR------FSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPM-DKSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFK 110
            DP + H RLGH+        QQ         FS K GVC  C  G + ++P +  +  R   PLEL+HTD+ GPM ++S GG ++ I F+DDYSRMC V  LR KS  +   K+FK
Sbjct:   62 DPWIWHRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 177          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 85.1 bits (209), Expect = 8.100e-18
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 0
Query:    5 LLHERLGHVRDLPTVARQQD-IRFSG--KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 114
            L H+RLGH   L  +    + ++FS   +L  C AC  G  ++QP K   E R+   L+L+H+D+ GPM  +S GG ++ + F+DD+SR CKV  ++ KSE L   K+F+R  S
Sbjct:   56 LWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFS 169          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A6S7J544_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J544_PARCT)

HSP 1 Score: 83.2 bits (204), Expect = 4.100e-17
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 0
Query:    3 PKLLHERLGHVR--DLPTVARQQ-----DIRFSGKLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 114
            P L H+R+ H+    +  +A ++     DI  +GKL  C AC +G A + P K   E +++  LELVH+D+AGPM  +SFGG ++ + F+DDYSR   V  ++ KSE L   K+++  V+
Sbjct:   25 PDLWHQRMAHLNAGQMKIMASKELITGTDIPGTGKLSFCVACAEGKAHRAPFKPVGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVHPMKYKSEVLEKFKEWEAAVT 144          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE)

HSP 1 Score: 85.1 bits (209), Expect = 6.230e-17
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 0
Query:    5 LLHERLGHVRDLPTVARQQD-IRFSG--KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 114
            L H+RLGH   L  +    + ++FS   +L  C AC  G  ++QP K   E R+   L+L+H+D+ GPM  +S GG ++ + F+DD+SR CKV  ++ KSE L   K+F+R  S
Sbjct:  427 LWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFS 540          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 82.0 bits (201), Expect = 8.570e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    3 PKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 114
            P+L H+R GH+ +   + +  +I  +G      K GVC+ CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KS++L  LK++ +D++
Sbjct:    1 PELWHQRFGHI-NYEYLRQMGEIDDTGVPKGIKKPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMN 118          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.590e-16
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    3 PKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 114
            P+L H+R GH+ +   + +  +I  +G      K GVC  CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KSE+L  LK++ +D++
Sbjct:   21 PELWHQRFGHM-NYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 138          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.070e-16
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    3 PKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 114
            P+L H+R GH+ +   + +  +I  +G      K GVC  CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KSE+L  LK++ +D++
Sbjct:   67 PELWHQRFGHI-NYEYLKQMGEIDDTGVPKGIKKPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 184          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.020e-16
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    3 PKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 114
            P+L H+R GH+ +   + +  +I  +G      K G+C+ CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KSE+L  LK++ +D++
Sbjct:   71 PELWHQRFGHI-NYEYLRQMGEIDDTGVPKGIKKPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 188          
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.470e-16
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    3 PKLLHERLGHVRDLPTVARQQDIRFSG------KLGVCSACEKGNASKQPVKKYREERTSEPLELVHTDIAGPMD-KSFGGCRFAIIFVDDYSRMCKVCTLRQKSEALWGLKQFKRDVS 114
            P+L H+R GH+ +   + +  +I  +G      K GVC  CE+   +K+       ER  EPLELVHTD+ GP++ +S GG R+AI F DDY+R   V  ++ KSE+L  LK++ +D++
Sbjct:   21 PELWHQRFGHM-NYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMN 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44999.11317.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y1REW6_PRUDU1.550e-1842.24Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU1.550e-1842.24BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
A0A0S7KIZ2_9TELE8.100e-1839.47POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A6S7J544_PARCT4.100e-1738.33Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0S7KIW8_9TELE6.230e-1739.47POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
K8YS61_NANGC8.570e-1738.66Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA2.590e-1639.50Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7T174_9STRA3.070e-1639.50Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T9I7_9STRA4.020e-1638.66Copia-like retrotransposable element n=1 Tax=Nanno... [more]
W7TIQ5_9STRA5.470e-1639.50Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 48..113
e-value: 1.5E-8
score: 36.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..111
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 6..111
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 53..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44999contigH-paniculata_contig44999:939..1283 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44999.11317.1mRNA_H-paniculata_contig44999.11317.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig44999 915..1283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig44999.11317.1 ID=prot_H-paniculata_contig44999.11317.1|Name=mRNA_H-paniculata_contig44999.11317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MDPKLLHERLGHVRDLPTVARQQDIRFSGKLGVCSACEKGNASKQPVKKY
REERTSEPLELVHTDIAGPMDKSFGGCRFAIIFVDDYSRMCKVCTLRQKS
EALWGLKQFKRDVSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf