mRNA_H-paniculata_contig4495.11312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4495.11312.1
Unique NamemRNA_H-paniculata_contig4495.11312.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-15
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   19 QCNASRLDSVTV*SLGIGSSEKTCKNPEM-KVMKKLVACVDVFNHSAVNNNEAKDIQMMHEEFHVVCELIGQKVTR 243
            +CNA RL+SVT+ +LGI  S +T +NP M K+MK+L A V VF+HSAVNN+E KDIQ + EEF ++ ELI +  TR
Sbjct:   46 KCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTR 121          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.290e-15
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   19 QCNASRLDSVTV*SLGIGSSEKTCKNPEM-KVMKKLVACVDVFNHSAVNNNEAKDIQMMHEEFHVVCELIGQKVTR 243
            +CNA RL+SVT+ +LGI  S +T +NP M K+MK+L A V VF+HSAVNN+E KDIQ + EEF ++ ELI +  TR
Sbjct:  374 KCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTR 449          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.700e-11
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  266 ILKNDKMRAGEQKTMLRLPQLKIAIIVHFSNHPTSKWMLIMSEWLVTSEVCSLLDTISEVTTRIQGSLNTHISQMTFIMIKMVEVLKLDNHLIRTSAVQNTT 571
            I +ND     + K M RL  LK  I  +F   P +   L   EW +T+EVCSLL  +SEVT R+QG+ +THISQ  FI+ +++E+L+ D+H IR    QN T
Sbjct:  451 IRRNDTRWTSQFKMMDRLLALKKPITEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVTIRMQGAKDTHISQAMFIIHEVMEMLREDSHPIRA---QNAT 549          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.250e-11
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  266 ILKNDKMRAGEQKTMLRLPQLKIAIIVHFSNHPTSKWMLIMSEWLVTSEVCSLLDTISEVTTRIQGSLNTHISQMTFIMIKMVEVLKLDNHLIR 547
            + +ND     + K M R+  LK  I  +F  +P ++  L  +EW +T+EVCSLL  +SEVT R+QGS++TH+ Q  FI+ +++E+L  D H IR
Sbjct:  453 LRRNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIR 546          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.380e-11
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  266 ILKNDKMRAGEQKTMLRLPQLKIAIIVHF-------SNHPTSKWMLIMSEWLVTSEVCSLLDTISEVTTRIQGSLNTHISQMTFIMIKMVEVLKLDNHLIRTSA 556
            I +ND     +QK M RL  LK  I  +F       S +   K  L   EW VT+EVCSLL+T+SEVT R+QG+ +TH+SQ TFI+ +++++L  D H IR  +
Sbjct:  260 IRRNDTRWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDMLTTDYHPIRVES 363          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-11
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  275 NDKMRAGEQKTMLRLPQLKIAIIVHFSNHPTSKWMLIMSEWLVTSEVCSLLDTISEVTTRIQGSLNTHISQMTFIMIKMVEVLKLDNHLIR 547
            ND     + K M R+  LK  I  +F  +P ++  L  +EW +T+EVCSLL  +SEVT R+QGS++TH+ Q  FI+ +++E+L  D H IR
Sbjct:  261 NDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIR 351          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.380e-10
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  302 KTMLRLPQLKIAIIVHFSN-------HPTSKWMLIMSEWLVTSEVCSLLDTISEVTTRIQGSLNTHISQMTFIMIKMVEVLKLDNHLIR 547
            + M+RL  L  AI  +F         H   K  L   EW VT+EVCSLLDT+SE T R+QG+ +THISQ TFI+ +++E+LK D+H IR
Sbjct:  265 RMMVRLLILNKAINEYFRRLAQQNPQHKQLKRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIR 353          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5KZZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.470e-9
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  266 ILKNDKMRAGEQKTMLRLPQLKIAIIVHFSNHPTSKWMLIMSEWLVTSEVCSLLDTISEVTTRIQGSLNTHISQMTFIMIKMVEVLKLDNHLIR 547
            + +ND     + K M R   LK  I  +F  +  ++  L  +EW + +EVCSLL  +SEVT R+QGS++THI Q  FI+ +++E+L  D H IR
Sbjct:   42 LRRNDTRWTSQFKMMDRCLALKKPISEYFKKYLQNERKLTPNEWTMINEVCSLLSNVSEVTIRMQGSVDTHIGQAMFIIHELIEMLGEDTHPIR 135          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.150e-8
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   19 QCNASRLDSVTV*SLGIGSSEKTCKNPEM-KVMKKLVACVDVFNHSAVNNNEAKDIQMMHEEFHVVCELIGQKVTR 243
            +CN  R+++  V +LGI +  +  KNP M  +MKKL A V VF+HSAVNN+E K++Q + E F  + EL+ +  TR
Sbjct:   35 ECNCHRVNTAVVWALGIAAKGR--KNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTR 108          
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.270e-8
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  302 KTMLRLPQLKIAIIVHFSNHPTS------KWMLIMSEWLVTSEVCSLLDTISEVTTRIQGSLNTHISQMTFIMIKMVEVLKLDNHLIRTS 553
            K M RL  LK  I  +F   P        K  L   EW+VT+EVCSLL  +SE+T RIQG+ +THISQ  F++ +++E+LK + H IRT+
Sbjct:  127 KMMGRLLTLKKPISEYFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTA 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4495.11312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.100e-1556.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.290e-1556.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE1.700e-1144.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE4.250e-1141.49Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JZU3_9PHAE7.380e-1143.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE7.400e-1142.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE2.380e-1048.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZZ1_9PHAE7.470e-940.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.150e-844.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE2.270e-845.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4495contigH-paniculata_contig4495:3476..4530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size596
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4495.11312.1prot_H-paniculata_contig4495.11312.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4495 3495..4283 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.7661228-UTR-H-paniculata_contig4495:3475..34941622930349.7661228-UTR-H-paniculata_contig4495:3475..3494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4495 3476..3494 -
1691481252.6322603-UTR-H-paniculata_contig4495:3475..34941691481252.6322603-UTR-H-paniculata_contig4495:3475..3494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4495 3476..3494 -
1622930349.8176765-UTR-H-paniculata_contig4495:4283..45301622930349.8176765-UTR-H-paniculata_contig4495:4283..4530Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4495 4284..4530 -
1691481252.6627793-UTR-H-paniculata_contig4495:4283..45301691481252.6627793-UTR-H-paniculata_contig4495:4283..4530Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4495 4284..4530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.786952-CDS-H-paniculata_contig4495:3494..37861622930349.786952-CDS-H-paniculata_contig4495:3494..3786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4495 3495..3786 -
1691481252.6422024-CDS-H-paniculata_contig4495:3494..37861691481252.6422024-CDS-H-paniculata_contig4495:3494..3786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4495 3495..3786 -
1622930349.8046777-CDS-H-paniculata_contig4495:4245..42831622930349.8046777-CDS-H-paniculata_contig4495:4245..4283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4495 4246..4283 -
1691481252.651847-CDS-H-paniculata_contig4495:4245..42831691481252.651847-CDS-H-paniculata_contig4495:4245..4283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4495 4246..4283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4495.11312.1

>prot_H-paniculata_contig4495.11312.1 ID=prot_H-paniculata_contig4495.11312.1|Name=mRNA_H-paniculata_contig4495.11312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MSFVAYILKNDKMRAGEQKTMLRLPQLKIAIIVHFSNHPTSKWMLIMSEW
LVTSEVCSLLDTISEVTTRIQGSLNTHISQMTFIMIKMVEVLKLDNHLIR
TSAVQNTTM*
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mRNA from alignment at H-paniculata_contig4495:3476..4530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4495.11312.1 ID=mRNA_H-paniculata_contig4495.11312.1|Name=mRNA_H-paniculata_contig4495.11312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-paniculata_contig4495:3476..4530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGGTGGGGTTAAGGTCAATGCAACGCCTCTCGCCTGGACTCGGTCAC CGTCTAGAGTTTGGGAATTGGCAGTTCGGAGAAGACATGCAAGAATCCGG AGATGAAGGTCATGAAGAAGCTGGTGGCATGCGTTGACGTCTTTAATCAC TCGGCGGTCAACAATAACGAGGCGAAGGACATCCAGATGATGCACGAGGA GTTCCACGTGGTGTGCGAGCTCATCGGGCAAAAGGTCACGAGGTAGGATG AGTTTCGTTGCGTACATTTTGAAAAATGACAAGATGTTTGTTACTTGAGA ATATACATCAAACAAAACGTGAAAAACGCCGCAAAAGCTGACGTCTGGCA CGTGCAGCGTTACAAGCAAACTTCGACGTGTTGCCTTCAGTCGGTCATTC AAATCTTGTTGGGTCCTTGATGAGAGAACATTCATGTCCATCTGGCGGTA TGGTTTTTTAGTGTATTCATCGATAAATGTAGTACGGTGCAATATGTTCA GGCTGCTACAGTTACTGATATATGTGTATACGGATCACGGGTGACTCGAT TTTCAAGGTTTTGCTTCGCAGTAAGTCGTATCGAAAGTGTAGCCATTTGA TGTAACGCGGGAGCAGTAACGCAGTAGCCCTAACACACAAATACGAACAA AGATACGACCAACATGCTGTCCGTAACTCTTGCGTCCTTTTGCCTCTCCC CTTTGTGCTGTGTTTTTACTCCCATCCTGTACTCTGTCAAGCAGGCGGGC CGGTGAACAAAAGACGATGCTCCGACTTCCGCAGCTAAAGATCGCCATCA TCGTGCACTTCAGCAACCACCCGACCAGCAAGTGGATGCTGATAATGAGC GAGTGGCTCGTCACGAGCGAGGTGTGCAGTCTACTCGATACCATCTCGGA GGTGACGACACGAATCCAGGGGTCCCTAAACACGCACATCAGTCAGATGA CCTTCATCATGATAAAGATGGTGGAGGTGTTGAAGCTAGATAATCACCTT ATCCGCACAAGCGCGGTTCAGAATACCACAATGTGATTGATCTCACACAG CAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4495:3476..4530-

>mRNA_H-paniculata_contig4495.11312.1 ID=mRNA_H-paniculata_contig4495.11312.1|Name=mRNA_H-paniculata_contig4495.11312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig4495:3476..4530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTTCGTTGCGTACATTTTGAAAAATGACAAGATATGAGTTTCGTT
GCGTACATTTTGAAAAATGACAAGATGCGGGCCGGTGAACAAAAGACGAT
GCTCCGACTTCCGCAGCTAAAGATCGCCATCATCGTGCACTTCAGCAACC
ACCCGACCAGCAAGTGGATGCTGATAATGAGCGAGTGGCTCGTCACGAGC
GAGGTGTGCAGTCTACTCGATACCATCTCGGAGGTGACGACACGAATCCA
GGGGTCCCTAAACACGCACATCAGTCAGATGACCTTCATCATGATAAAGA
TGGTGGAGGTGTTGAAGCTAGATAATCACCTTATCCGCACAAGCGCGGTT
CAGAATACCACAATGTGAGCGGGCCGGTGAACAAAAGACGATGCTCCGAC
TTCCGCAGCTAAAGATCGCCATCATCGTGCACTTCAGCAACCACCCGACC
AGCAAGTGGATGCTGATAATGAGCGAGTGGCTCGTCACGAGCGAGGTGTG
CAGTCTACTCGATACCATCTCGGAGGTGACGACACGAATCCAGGGGTCCC
TAAACACGCACATCAGTCAGATGACCTTCATCATGATAAAGATGGTGGAG
GTGTTGAAGCTAGATAATCACCTTATCCGCACAAGCGCGGTTCAGAATAC
CACAATGTGA
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