mRNA_H-paniculata_contig44925.11308.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44925.11308.1
Unique NamemRNA_H-paniculata_contig44925.11308.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5KRJ6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.040e-13
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 AASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A SSV+++ A+A E +  +   D+KQAF+Q+ LD +VFM+LPEGCG  SG IV+LNK++Y
Sbjct:  198 AVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 257
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.040e-13
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 AASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A SSV+++ A+A E +  +   D+KQAF+Q+ LD +VFM+LPEGCG  SG IV+LNK++Y
Sbjct:   17 AVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 76
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5KSD7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.280e-13
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 AASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A SSV+++ A+A E +  +   D+KQAF+Q+ LD +VFM+LPEGCG  SG IV+LNK++Y
Sbjct:  191 AVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 250
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.280e-13
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 AASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A SSV+++ A+A E +  +   D+KQAF+Q+ LD +VFM+LPEGCG  SG IV+LNK++Y
Sbjct:  191 AVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 250
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5K9I1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.320e-13
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 AASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A SSV+++ A+A E +  +   D+KQAF+Q+ LD +VFM+LPEGCG  SG IV+LNK++Y
Sbjct:  547 AVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 606
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.340e-13
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 AASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A SSV+++ A+A E +  +   D+KQAF+Q+ LD +VFM+LPEGCG  SG IV+LNK++Y
Sbjct:  742 AVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 801
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.340e-13
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 AASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A SSV+++ A+A E +  +   D+KQAF+Q+ LD +VFM+LPEGCG  SG IV+LNK++Y
Sbjct:  712 AVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 771
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JFP7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.380e-12
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 2 
Query:    2 AASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A SSV+++ A+A E +  +   D+KQAF+Q+ L  +VFM+LPEGCG  SG IV+LNK++Y
Sbjct:   18 AISSVRLLAAMACEQNLSLRHFDIKQAFVQSDLGEDVFMRLPEGCGRLSGMIVKLNKSLY 77
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.730e-12
Identity = 30/59 (50.85%), Postives = 48/59 (81.36%), Query Frame = 2 
Query:    5 ASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A+S ++V+A+A + +  +   D++QAF+Q+ LD+EVFMKLP GCG+ SG++VRLNK++Y
Sbjct:   73 AASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLY 131
[Close]
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.870e-12
Identity = 30/59 (50.85%), Postives = 48/59 (81.36%), Query Frame = 2 
Query:    5 ASSVKMVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 181
            A+S ++V+A+A + +  +   D++QAF+Q+ LD+EVFMKLP GCG+ SG++VRLNK++Y
Sbjct:   73 AASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLY 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRJ6_9PHAE7.040e-1353.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE7.040e-1353.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSD7_9PHAE7.280e-1353.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE7.280e-1353.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9I1_9PHAE7.320e-1353.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKG5_9PHAE7.340e-1353.33Integrase catalytic domain-containing protein n=6 ... [more]
A0A6H5K2R1_9PHAE7.340e-1353.33Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JFP7_9PHAE1.380e-1251.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQD0_9PHAE1.730e-1250.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE1.870e-1250.85Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44925contigH-paniculata_contig44925:32..212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.4201198-UTR-H-paniculata_contig44925:31..501622930349.4201198-UTR-H-paniculata_contig44925:31..50Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44925 32..50 +
1691481252.5108032-UTR-H-paniculata_contig44925:31..501691481252.5108032-UTR-H-paniculata_contig44925:31..50Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44925 32..50 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.4383025-CDS-H-paniculata_contig44925:50..2121622930349.4383025-CDS-H-paniculata_contig44925:50..212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44925 51..212 +
1691481252.5211535-CDS-H-paniculata_contig44925:50..2121691481252.5211535-CDS-H-paniculata_contig44925:50..212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44925 51..212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44925.11308.1prot_H-paniculata_contig44925.11308.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44925 51..212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44925.11308.1

>prot_H-paniculata_contig44925.11308.1 ID=prot_H-paniculata_contig44925.11308.1|Name=mRNA_H-paniculata_contig44925.11308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLN
KAMY
back to top

mRNA from alignment at H-paniculata_contig44925:32..212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44925.11308.1 ID=mRNA_H-paniculata_contig44925.11308.1|Name=mRNA_H-paniculata_contig44925.11308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=181bp|location=Sequence derived from alignment at H-paniculata_contig44925:32..212+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCGCTTCCAGTGTGAAGATGGTAATTGCTGTTGCTGTCGAAAACGACT
GGGGAATGTGGCAACTTGATGTAAAACAGGCTTTTATTCAGGCAATTTTA
GATTTCGAGGTGTTCATGAAGCTTCCAGAGGGTTGCGGGAACAAGAGCGG
TAGGATAGTAAGGCTGAATAAGGCTATGTAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig44925:32..212+

>mRNA_H-paniculata_contig44925.11308.1 ID=mRNA_H-paniculata_contig44925.11308.1|Name=mRNA_H-paniculata_contig44925.11308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig44925:32..212+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAATTGCTGTTGCTGTCGAAAACGACTGGGGAATGTGGCAACTTGA
TGTAAAACAGGCTTTTATTCAGGCAATTTTAGATTTCGAGGTGTTCATGA
AGCTTCCAGAGGGTTGCGGGAACAAGAGCGGTAGGATAGTAAGGCTGAAT
AAGGCTATGTATATGGTAATTGCTGTTGCTGTCGAAAACGACTGGGGAAT
GTGGCAACTTGATGTAAAACAGGCTTTTATTCAGGCAATTTTAGATTTCG
AGGTGTTCATGAAGCTTCCAGAGGGTTGCGGGAACAAGAGCGGTAGGATA
GTAAGGCTGAATAAGGCTATGTAT
back to top