prot_H-paniculata_contig44925.11308.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig44925.11308.1
Unique Nameprot_H-paniculata_contig44925.11308.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length54
Homology
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.670e-11
Identity = 28/54 (51.85%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            +V+A+A + +  +   D++QAF+Q+ LD+EVFMKLP GCG+ SG++VRLNK++Y
Sbjct:   78 LVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLY 131          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 28/54 (51.85%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            +V+A+A + +  +   D++QAF+Q+ LD+EVFMKLP GCG+ SG++VRLNK++Y
Sbjct:   78 LVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLY 131          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 28/54 (51.85%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            +V+A+A + +  +   D++QAF+Q+ LD+EVFMKLP GCG+ SG++VRLNK++Y
Sbjct:  643 LVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLY 696          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 28/54 (51.85%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            +V+A+A + +  +   D++QAF+Q+ LD+EVFMKLP GCG+ SG++VRLNK++Y
Sbjct:  544 LVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLY 597          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 28/54 (51.85%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            +V+A+A + +  +   D++QAF+Q+ LD+EVFMKLP GCG+ SG++VRLNK++Y
Sbjct:  811 LVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLY 864          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JLU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.480e-10
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            M+ A+A E D  + Q DV QAF++A L  ++FM+LPEGCG  SG+IV+LNK++Y
Sbjct: 1262 MLAALACELDLELCQFDVDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLY 1315          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JA99_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA99_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-9
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            M+ A+A E D  +   D+ QAF++A+L  ++FM+LPEGCG  SG+IV+LNK++Y
Sbjct:  704 MLAALACELDLELCHFDIDQAFVRALLKEDIFMRLPEGCGALSGKIVQLNKSLY 757          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JSV9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.380e-9
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            M+ A+A E D  +   D+ QAF++A L  ++FM+LPEGCG  SG+IV+LNK++Y
Sbjct:   23 MLAALACELDLELCHFDIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLY 76          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5L6K5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.570e-9
Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            M+ A+A E D  +   D+ QAF++A L+  +FM++PEGCG  SG+IV+LNK++Y
Sbjct:  103 MLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLY 156          
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Match: A0A6H5JXD4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.610e-9
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    1 MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLNKAMY 54
            M+ A+A E D  +   D+ QAF++A L  ++FM+LPEGCG  SG+IV+LNK++Y
Sbjct: 1172 MLAALACELDLELCHFDIDQAFVRAALKEDIFMRLPEGCGALSGKIVQLNKSLY 1225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44925.11308.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQD0_9PHAE1.670e-1151.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE1.750e-1151.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE1.750e-1151.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE1.750e-1151.85Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.750e-1151.85Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JLU1_9PHAE7.480e-1053.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JA99_9PHAE1.020e-950.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSV9_9PHAE1.380e-950.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6K5_9PHAE2.570e-948.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXD4_9PHAE2.610e-950.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..54
e-value: 1.5E-10
score: 41.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44925contigH-paniculata_contig44925:51..212 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44925.11308.1mRNA_H-paniculata_contig44925.11308.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig44925 32..212 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig44925.11308.1 ID=prot_H-paniculata_contig44925.11308.1|Name=mRNA_H-paniculata_contig44925.11308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MVIAVAVENDWGMWQLDVKQAFIQAILDFEVFMKLPEGCGNKSGRIVRLN
KAMY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2