mRNA_H-paniculata_contig44826.11295.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: K1WQ84_TRIAC (Uncharacterized protein n=1 Tax=Trichosporon asahii var. asahii (strain CBS 8904) TaxID=1220162 RepID=K1WQ84_TRIAC) HSP 1 Score: 67.8 bits (164), Expect = 8.060e-13 Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 16 HYPVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNAL 243
H PV DNQ A R+ S +HIDV+HH VR+ V+ GK+ + Y++T +QHADV TKAL G + H AL
Sbjct: 18 HEPVNLAVDNQAAIRIAEKPVSFPLAKHIDVRHHFVREEVEKGKITLSYVKTSDQHADVFTKALPGPTHAFHTKAL 93
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5L4L4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L4_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 8.490e-13 Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNVV 255
EDNQGA ++ N SN +HIDV+HH +R+ V ++ I ++E+ QHAD LTKAL+ FE H N +M+VV
Sbjct: 1189 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVDRKEISIFHVESAYQHADFLTKALHVGDFEFHRNFVMSVV 1261
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A182H7M1_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H7M1_AEDAL) HSP 1 Score: 67.8 bits (164), Expect = 9.330e-13 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 19 YPVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSF 222
YPV EDNQGA M K R +HID+K H +RDAV AG++ +VY+ T Q AD+LTK L SF
Sbjct: 35 YPVPIFEDNQGAIAMA-QKEETKRAKHIDIKFHFIRDAVTAGRIQLVYVSTQHQEADILTKTLAAPSF 101
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 2.110e-12 Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 22 PVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
PV+ EDNQGA ++ N SN +HIDV+HH +R+ V+ ++ I ++E+ QHAD LTKAL FE H N +M++
Sbjct: 179 PVL--EDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMSM 253
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 3.740e-12 Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
EDNQGA ++ N SN +HIDV+HH +R+ V ++ I ++E+ QHAD LTKAL+ FE H N +M++
Sbjct: 366 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 3.920e-12 Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
EDNQGA ++ N SN +HIDV+HH +R+ V ++ I ++E+ QHAD LTKAL+ FE H N +M++
Sbjct: 540 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 4.220e-12 Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
EDNQGA ++ HN +N +HIDV+HH +R+ V+ ++ I ++ + QHAD LTKA+ SF H + +MN+
Sbjct: 47 EDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 118
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 5.110e-12 Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
EDNQGA ++ N SN +HIDV+HH +R+ V ++ I ++E+ QHAD LTKAL+ FE H N +M +
Sbjct: 364 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMRM 435
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A2S2QG96_9HEMI (Copia protein (Fragment) n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QG96_9HEMI) HSP 1 Score: 65.1 bits (157), Expect = 7.390e-12 Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 22 PVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHV 234
P + EDNQ ++T N + R +HID+KHH +R+ VK G V + Y+ T +Q AD+LTK+L S F+ ++
Sbjct: 22 PTLLYEDNQSCIKLTSNSEYHKRTKHIDIKHHYIREKVKDGTVQLKYIHTTDQEADMLTKSLPTSKFKNNL 92
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.400e-11 Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
EDNQGA ++ N SN +HIDV+HH +R+ V ++ I ++E+ QHA+ LTKAL+ FE H N +M++
Sbjct: 1061 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVMSM 1132 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44826.11295.1 >prot_H-paniculata_contig44826.11295.1 ID=prot_H-paniculata_contig44826.11295.1|Name=mRNA_H-paniculata_contig44826.11295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp MPTLQHYPVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVback to top mRNA from alignment at H-paniculata_contig44826:336..593+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44826.11295.1 ID=mRNA_H-paniculata_contig44826.11295.1|Name=mRNA_H-paniculata_contig44826.11295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig44826:336..593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44826:336..593+ >mRNA_H-paniculata_contig44826.11295.1 ID=mRNA_H-paniculata_contig44826.11295.1|Name=mRNA_H-paniculata_contig44826.11295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig44826:336..593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |