mRNA_H-paniculata_contig44826.11295.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44826.11295.1
Unique NamemRNA_H-paniculata_contig44826.11295.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: K1WQ84_TRIAC (Uncharacterized protein n=1 Tax=Trichosporon asahii var. asahii (strain CBS 8904) TaxID=1220162 RepID=K1WQ84_TRIAC)

HSP 1 Score: 67.8 bits (164), Expect = 8.060e-13
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   16 HYPVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNAL 243
            H PV    DNQ A R+     S    +HIDV+HH VR+ V+ GK+ + Y++T +QHADV TKAL G +   H  AL
Sbjct:   18 HEPVNLAVDNQAAIRIAEKPVSFPLAKHIDVRHHFVREEVEKGKITLSYVKTSDQHADVFTKALPGPTHAFHTKAL 93          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5L4L4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.490e-13
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNVV 255
            EDNQGA ++  N  SN   +HIDV+HH +R+ V   ++ I ++E+  QHAD LTKAL+   FE H N +M+VV
Sbjct: 1189 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVDRKEISIFHVESAYQHADFLTKALHVGDFEFHRNFVMSVV 1261          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A182H7M1_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H7M1_AEDAL)

HSP 1 Score: 67.8 bits (164), Expect = 9.330e-13
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   19 YPVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSF 222
            YPV   EDNQGA  M   K    R +HID+K H +RDAV AG++ +VY+ T  Q AD+LTK L   SF
Sbjct:   35 YPVPIFEDNQGAIAMA-QKEETKRAKHIDIKFHFIRDAVTAGRIQLVYVSTQHQEADILTKTLAAPSF 101          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.110e-12
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   22 PVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
            PV+  EDNQGA ++  N  SN   +HIDV+HH +R+ V+  ++ I ++E+  QHAD LTKAL    FE H N +M++
Sbjct:  179 PVL--EDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMSM 253          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.740e-12
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
            EDNQGA ++  N  SN   +HIDV+HH +R+ V   ++ I ++E+  QHAD LTKAL+   FE H N +M++
Sbjct:  366 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.920e-12
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
            EDNQGA ++  N  SN   +HIDV+HH +R+ V   ++ I ++E+  QHAD LTKAL+   FE H N +M++
Sbjct:  540 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.220e-12
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
            EDNQGA ++ HN  +N   +HIDV+HH +R+ V+  ++ I ++ +  QHAD LTKA+   SF  H + +MN+
Sbjct:   47 EDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 118          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.110e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
            EDNQGA ++  N  SN   +HIDV+HH +R+ V   ++ I ++E+  QHAD LTKAL+   FE H N +M +
Sbjct:  364 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMRM 435          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A2S2QG96_9HEMI (Copia protein (Fragment) n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QG96_9HEMI)

HSP 1 Score: 65.1 bits (157), Expect = 7.390e-12
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   22 PVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHV 234
            P +  EDNQ   ++T N   + R +HID+KHH +R+ VK G V + Y+ T +Q AD+LTK+L  S F+ ++
Sbjct:   22 PTLLYEDNQSCIKLTSNSEYHKRTKHIDIKHHYIREKVKDGTVQLKYIHTTDQEADMLTKSLPTSKFKNNL 92          
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.400e-11
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   37 EDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKVDIVYMETGEQHADVLTKALYGSSFEKHVNALMNV 252
            EDNQGA ++  N  SN   +HIDV+HH +R+ V   ++ I ++E+  QHA+ LTKAL+   FE H N +M++
Sbjct: 1061 EDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVMSM 1132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44826.11295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K1WQ84_TRIAC8.060e-1346.05Uncharacterized protein n=1 Tax=Trichosporon asahi... [more]
A0A6H5L4L4_9PHAE8.490e-1347.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A182H7M1_AEDAL9.330e-1351.47Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A6H5JTK6_9PHAE2.110e-1245.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE3.740e-1245.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.920e-1245.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNH6_9PHAE4.220e-1243.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0Z9_9PHAE5.110e-1245.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2S2QG96_9HEMI7.390e-1242.25Copia protein (Fragment) n=1 Tax=Sipha flava TaxID... [more]
A0A6H5K2R1_9PHAE1.400e-1144.44Integrase catalytic domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44826contigH-paniculata_contig44826:336..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue6.4e-09
Seed eggNOG ortholog164328.Phyra79615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930347.4120471-CDS-H-paniculata_contig44826:335..5931622930347.4120471-CDS-H-paniculata_contig44826:335..593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44826 336..593 +
1691481251.6400745-CDS-H-paniculata_contig44826:335..5931691481251.6400745-CDS-H-paniculata_contig44826:335..593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44826 336..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44826.11295.1prot_H-paniculata_contig44826.11295.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44826 336..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44826.11295.1

>prot_H-paniculata_contig44826.11295.1 ID=prot_H-paniculata_contig44826.11295.1|Name=mRNA_H-paniculata_contig44826.11295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MPTLQHYPVISKEDNQGAERMTHNKPSNWRMRHIDVKHHIVRDAVKAGKV
DIVYMETGEQHADVLTKALYGSSFEKHVNALMNVV*
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mRNA from alignment at H-paniculata_contig44826:336..593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44826.11295.1 ID=mRNA_H-paniculata_contig44826.11295.1|Name=mRNA_H-paniculata_contig44826.11295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig44826:336..593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACGCTGCAACACTACCCCGTAATAAGCAAGGAAGACAATCAAGG GGCCGAAAGGATGACCCACAACAAGCCCAGCAATTGGAGGATGCGTCATA TCGACGTGAAGCACCACATTGTTCGCGATGCGGTTAAGGCTGGGAAGGTT GACATAGTGTATATGGAGACGGGAGAACAGCACGCGGACGTGCTCACGAA GGCGCTCTACGGGAGTTCTTTTGAGAAGCACGTAAACGCGTTGATGAATG TTGTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig44826:336..593+

>mRNA_H-paniculata_contig44826.11295.1 ID=mRNA_H-paniculata_contig44826.11295.1|Name=mRNA_H-paniculata_contig44826.11295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig44826:336..593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACGCTGCAACACTACCCCGTAATAAGCAAGGAAGACAATCAAGG
GGCCGAAAGGATGACCCACAACAAGCCCAGCAATTGGAGGATGCGTCATA
TCGACGTGAAGCACCACATTGTTCGCGATGCGGTTAAGGCTGGGAAGGTT
GACATAGTGTATATGGAGACGGGAGAACAGCACGCGGACGTGCTCACGAA
GGCGCTCTACGGGAGTTCTTTTGAGAAGCACGTAAACGCGTTGATGAATG
TTGTGTAAATGCCAACGCTGCAACACTACCCCGTAATAAGCAAGGAAGAC
AATCAAGGGGCCGAAAGGATGACCCACAACAAGCCCAGCAATTGGAGGAT
GCGTCATATCGACGTGAAGCACCACATTGTTCGCGATGCGGTTAAGGCTG
GGAAGGTTGACATAGTGTATATGGAGACGGGAGAACAGCACGCGGACGTG
CTCACGAAGGCGCTCTACGGGAGTTCTTTTGAGAAGCACGTAAACGCGTT
GATGAATGTTGTGTAA
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