mRNA_H-paniculata_contig4465.11261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 152 bits (383), Expect = 7.800e-39 Identity = 102/247 (41.30%), Postives = 149/247 (60.32%), Query Frame = 1
Query: 4 ADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLP--------PEFS-PFSRDIPFVRHLCKKPRPDN-TLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITGLDD-----FKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
A KW+ A E E ++L+ N T D LP GRKAI K +FK K K DGS+ +YKARLVA+GYSQ G D+ ET PVA+ +++R ++SLAA+H+ E + MDV A+LN+ ++E +++++P P S P + + L + PR N T+D F++ IG +S D C Y R +E ILV+++VDDL++ D K S+RF+M DLG LS LG+E+ R P+G++ I Q
Sbjct: 57 ASKWKDACESEIKSLLDNKT---WDVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQDEDI--ILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGIEIVRS-PSGSVFIHQ 297
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM) HSP 1 Score: 150 bits (380), Expect = 6.820e-37 Identity = 97/254 (38.19%), Postives = 145/254 (57.09%), Query Frame = 1
Query: 1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQGTSAR 714
+A KW+ A + E +L+KN T D LP GRKAI + +F+ K + G + R+KARLVA+G+SQ G D+ ET APVA+ +++R V+SLAA++ + MDV A+LN ++E +++ P + D P H+CK R + T+DDF++ +G ++ +D C Y R +G I VA++VDDLV+ L+ KH S+RF M DLG L LGME+ +D G MS+ Q A+
Sbjct: 172 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAK 416
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 145 bits (367), Expect = 1.110e-36 Identity = 93/249 (37.35%), Postives = 143/249 (57.43%), Query Frame = 1
Query: 1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
+A KW+ A + E +L+KN T D LP GRKAI + +F+ K + G + R+KARLVA+G+SQ D+ ET APVA+ +++R V+SLAA++ + MDV A+LN ++E +++ P + D P H+CK R + T+DDF++ +G ++ +D C Y R +G I VA++VDDLV+ L+ KH S+RF M DLG L LGME++ D +G +++ Q
Sbjct: 35 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQ 274
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 150 bits (378), Expect = 1.490e-36 Identity = 95/251 (37.85%), Postives = 143/251 (56.97%), Query Frame = 1
Query: 1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITGLDDFKHDK-----SRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQGT 705
EA+ W+AAM++E +L +NGT + D LP GRKA+ K IFKRKL EDG+V RYKARLVAQG++Q G D+ E APV R T R ++++A++ + DV AYLN +EE +F++ PP + +RD +C + + D L + Q+S DPC Y RN +G T + ++VDD+VI DD ++++ +R F++ LG +S LG+++ R+ S+SQ T
Sbjct: 5 EAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA-----VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYT--YLVIYVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINRN--EKGFSLSQQT 243
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM) HSP 1 Score: 150 bits (380), Expect = 1.710e-36 Identity = 97/254 (38.19%), Postives = 145/254 (57.09%), Query Frame = 1
Query: 1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQGTSAR 714
+A KW+ A + E +L+KN T D LP GRKAI + +F+ K + G + R+KARLVA+G+SQ G D+ ET APVA+ +++R V+SLAA++ + MDV A+LN ++E +++ P + D P H+CK R + T+DDF++ +G ++ +D C Y R +G I VA++VDDLV+ L+ KH S+RF M DLG L LGME+ +D G MS+ Q A+
Sbjct: 169 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAK 413
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM) HSP 1 Score: 150 bits (379), Expect = 2.060e-36 Identity = 95/249 (38.15%), Postives = 144/249 (57.83%), Query Frame = 1
Query: 1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
+A KW+ A + E +L+KN T D LP GRKAI + +F+ K + G + R+KARLVA+G+SQ G D+ ET APVA+ +++R V+SLAA++ + MDV A+LN ++E +++ P + D P H+CK R + T+DDF++ +G ++ +D C Y R +G I VA++VDDLV+ LD KH S+RF M DLG L LGME++ D +G +++ Q
Sbjct: 294 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQ 533
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H7U8_PHYRM (CCHC-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U8_PHYRM) HSP 1 Score: 150 bits (378), Expect = 1.900e-35 Identity = 95/249 (38.15%), Postives = 144/249 (57.83%), Query Frame = 1
Query: 1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
+A KW+ A + E +L+KN T D LP GRKAI + +F+ K + G + R+KARLVA+G+SQ G D+ ET APVA+ +++R V+SLAA++ + MDV A+LN ++E +++ P + D P H+CK R + T+DDF++ +G ++ +D C Y RN G I VA++VDDLV+ L+ KH S+RF M DLG L LGME++ D +G +++ Q
Sbjct: 1105 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMTQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRN--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQ 1344
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM) HSP 1 Score: 140 bits (353), Expect = 2.310e-35 Identity = 91/239 (38.08%), Postives = 136/239 (56.90%), Query Frame = 1
Query: 1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRD 669
+A KW+ A + E +L+KN T D LP GRKAI + +F+ K + G + R+KARLVA+G+SQ G D+ ET APVA+ +++R V+SLAA++ + MDV A+LN ++E +++ P + D P H+CK R + T+DDF++ +G ++ +D C Y R +G I VA++VDDLV+ L D K S RF M D+G L LGME+ +D
Sbjct: 13 DAAKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKR--DGQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQD 242
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM) HSP 1 Score: 146 bits (368), Expect = 2.330e-35 Identity = 96/254 (37.80%), Postives = 143/254 (56.30%), Query Frame = 1
Query: 1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQGTSAR 714
+A KW+ A + E +L+KN T D LP GRKAI + +F+ K + G + R+KARLVA+G+SQ G D+ ET APVA+ +++R V+SLAA++ + MDV A+LN ++E +++ P + D P H+CK R + T+DDF++ +G ++ +D C Y R +G I VA++VDDLV+ L D K S RF M D+G L LGME+ +D G MS+ Q A+
Sbjct: 35 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKR--DGHDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAK 279
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 141 bits (356), Expect = 3.420e-35 Identity = 91/244 (37.30%), Postives = 140/244 (57.38%), Query Frame = 1
Query: 16 RAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
+ A + E +L+KN T D LP GRKAI + +F+ K + G + R+KARLVA+G+SQ G D+ ET APVA+ +++R V+SLAA++ + MDV A+LN ++E +++ P + D P H+CK R + T+DDF++ +G ++ +D C Y R +G I VA++VDDLV+ L+ KH S+RF M DLG L LGME++ D +G +++ Q
Sbjct: 1 KEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQ 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4465.11261.1 >prot_H-paniculata_contig4465.11261.1 ID=prot_H-paniculata_contig4465.11261.1|Name=mRNA_H-paniculata_contig4465.11261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp MSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDback to top mRNA from alignment at H-paniculata_contig4465:2115..3671- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4465.11261.1 ID=mRNA_H-paniculata_contig4465.11261.1|Name=mRNA_H-paniculata_contig4465.11261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1557bp|location=Sequence derived from alignment at H-paniculata_contig4465:2115..3671- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4465:2115..3671- >mRNA_H-paniculata_contig4465.11261.1 ID=mRNA_H-paniculata_contig4465.11261.1|Name=mRNA_H-paniculata_contig4465.11261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4465:2115..3671- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |