mRNA_H-paniculata_contig4465.11261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4465.11261.1
Unique NamemRNA_H-paniculata_contig4465.11261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.800e-39
Identity = 102/247 (41.30%), Postives = 149/247 (60.32%), Query Frame = 1
Query:    4 ADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLP--------PEFS-PFSRDIPFVRHLCKKPRPDN-TLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITGLDD-----FKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
            A KW+ A E E ++L+ N T    D   LP GRKAI  K +FK K K DGS+ +YKARLVA+GYSQ  G D+ ET  PVA+ +++R ++SLAA+H+ E + MDV  A+LN+ ++E +++++P        P  S P  +    +  L + PR  N T+D F++ IG  +S  D C Y  R +E    ILV+++VDDL++    D      K   S+RF+M DLG LS  LG+E+ R  P+G++ I Q
Sbjct:   57 ASKWKDACESEIKSLLDNKT---WDVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQDEDI--ILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGIEIVRS-PSGSVFIHQ 297          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM)

HSP 1 Score: 150 bits (380), Expect = 6.820e-37
Identity = 97/254 (38.19%), Postives = 145/254 (57.09%), Query Frame = 1
Query:    1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQGTSAR 714
            +A KW+ A + E  +L+KN T    D   LP GRKAI  + +F+ K  + G + R+KARLVA+G+SQ  G D+ ET APVA+ +++R V+SLAA++  +   MDV  A+LN  ++E +++  P  +     D P   H+CK  R            + T+DDF++ +G ++  +D C Y  R  +G   I VA++VDDLV+       L+  KH  S+RF M DLG L   LGME+ +D   G MS+ Q   A+
Sbjct:  172 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAK 416          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 145 bits (367), Expect = 1.110e-36
Identity = 93/249 (37.35%), Postives = 143/249 (57.43%), Query Frame = 1
Query:    1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
            +A KW+ A + E  +L+KN T    D   LP GRKAI  + +F+ K  + G + R+KARLVA+G+SQ    D+ ET APVA+ +++R V+SLAA++  +   MDV  A+LN  ++E +++  P  +     D P   H+CK  R            + T+DDF++ +G ++  +D C Y  R  +G   I VA++VDDLV+       L+  KH  S+RF M DLG L   LGME++ D  +G +++ Q
Sbjct:   35 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQ 274          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 150 bits (378), Expect = 1.490e-36
Identity = 95/251 (37.85%), Postives = 143/251 (56.97%), Query Frame = 1
Query:    1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITGLDDFKHDK-----SRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQGT 705
            EA+ W+AAM++E  +L +NGT +  D   LP GRKA+  K IFKRKL EDG+V RYKARLVAQG++Q  G D+ E  APV R  T R ++++A++     +  DV  AYLN  +EE +F++ PP +   +RD      +C   +            +   D  L  +  Q+S  DPC Y  RN +G T   + ++VDD+VI   DD ++++     +R F++  LG +S  LG+++ R+      S+SQ T
Sbjct:    5 EAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA-----VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYT--YLVIYVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINRN--EKGFSLSQQT 243          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM)

HSP 1 Score: 150 bits (380), Expect = 1.710e-36
Identity = 97/254 (38.19%), Postives = 145/254 (57.09%), Query Frame = 1
Query:    1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQGTSAR 714
            +A KW+ A + E  +L+KN T    D   LP GRKAI  + +F+ K  + G + R+KARLVA+G+SQ  G D+ ET APVA+ +++R V+SLAA++  +   MDV  A+LN  ++E +++  P  +     D P   H+CK  R            + T+DDF++ +G ++  +D C Y  R  +G   I VA++VDDLV+       L+  KH  S+RF M DLG L   LGME+ +D   G MS+ Q   A+
Sbjct:  169 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAK 413          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 150 bits (379), Expect = 2.060e-36
Identity = 95/249 (38.15%), Postives = 144/249 (57.83%), Query Frame = 1
Query:    1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
            +A KW+ A + E  +L+KN T    D   LP GRKAI  + +F+ K  + G + R+KARLVA+G+SQ  G D+ ET APVA+ +++R V+SLAA++  +   MDV  A+LN  ++E +++  P  +     D P   H+CK  R            + T+DDF++ +G ++  +D C Y  R  +G   I VA++VDDLV+       LD  KH  S+RF M DLG L   LGME++ D  +G +++ Q
Sbjct:  294 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQ 533          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H7U8_PHYRM (CCHC-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U8_PHYRM)

HSP 1 Score: 150 bits (378), Expect = 1.900e-35
Identity = 95/249 (38.15%), Postives = 144/249 (57.83%), Query Frame = 1
Query:    1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
            +A KW+ A + E  +L+KN T    D   LP GRKAI  + +F+ K  + G + R+KARLVA+G+SQ  G D+ ET APVA+ +++R V+SLAA++  +   MDV  A+LN  ++E +++  P  +     D P   H+CK  R            + T+DDF++ +G ++  +D C Y  RN  G   I VA++VDDLV+       L+  KH  S+RF M DLG L   LGME++ D  +G +++ Q
Sbjct: 1105 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMTQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRN--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQ 1344          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM)

HSP 1 Score: 140 bits (353), Expect = 2.310e-35
Identity = 91/239 (38.08%), Postives = 136/239 (56.90%), Query Frame = 1
Query:    1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRD 669
            +A KW+ A + E  +L+KN T    D   LP GRKAI  + +F+ K  + G + R+KARLVA+G+SQ  G D+ ET APVA+ +++R V+SLAA++  +   MDV  A+LN  ++E +++  P  +     D P   H+CK  R            + T+DDF++ +G ++  +D C Y  R  +G   I VA++VDDLV+       L D K   S RF M D+G L   LGME+ +D
Sbjct:   13 DAAKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKR--DGQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQD 242          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM)

HSP 1 Score: 146 bits (368), Expect = 2.330e-35
Identity = 96/254 (37.80%), Postives = 143/254 (56.30%), Query Frame = 1
Query:    1 EADKWRAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQGTSAR 714
            +A KW+ A + E  +L+KN T    D   LP GRKAI  + +F+ K  + G + R+KARLVA+G+SQ  G D+ ET APVA+ +++R V+SLAA++  +   MDV  A+LN  ++E +++  P  +     D P   H+CK  R            + T+DDF++ +G ++  +D C Y  R  +G   I VA++VDDLV+       L D K   S RF M D+G L   LGME+ +D   G MS+ Q   A+
Sbjct:   35 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKR--DGHDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAK 279          
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 141 bits (356), Expect = 3.420e-35
Identity = 91/244 (37.30%), Postives = 140/244 (57.38%), Query Frame = 1
Query:   16 RAAMEEEWRALMKNGT*ESEDPGRLPVGRKAIRTKRIFKRKLKEDGSVARYKARLVAQGYSQVEGEDFFETSAPVARMSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRDIPFVRHLCKKPRP-----------DNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVAVHVDDLVITG-----LDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSISQ 699
            + A + E  +L+KN T    D   LP GRKAI  + +F+ K  + G + R+KARLVA+G+SQ  G D+ ET APVA+ +++R V+SLAA++  +   MDV  A+LN  ++E +++  P  +     D P   H+CK  R            + T+DDF++ +G ++  +D C Y  R  +G   I VA++VDDLV+       L+  KH  S+RF M DLG L   LGME++ D  +G +++ Q
Sbjct:    1 KEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHP--DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR--DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQ 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4465.11261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WHK2_9STRA7.800e-3941.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7U0_PHYRM6.820e-3738.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H8P6_PHYRM1.110e-3637.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GIT5_AEDAL1.490e-3637.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3HA00_PHYRM1.710e-3638.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9Y1_PHYRM2.060e-3638.15CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H7U8_PHYRM1.900e-3538.15CCHC-type domain-containing protein n=3 Tax=Phytop... [more]
H3H7D1_PHYRM2.310e-3538.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H1B2_PHYRM2.330e-3537.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H934_PHYRM3.420e-3537.30Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4465contigH-paniculata_contig4465:2115..3671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue4e-17
Seed eggNOG ortholog164328.Phyra86833
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHRV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons4
Model size1303
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4465.11261.1prot_H-paniculata_contig4465.11261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4465 2922..3425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.9210718-UTR-H-paniculata_contig4465:2114..26371622930342.9210718-UTR-H-paniculata_contig4465:2114..2637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4465 2115..2637 -
1691481249.823593-UTR-H-paniculata_contig4465:2114..26371691481249.823593-UTR-H-paniculata_contig4465:2114..2637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4465 2115..2637 -
1622930342.9428556-UTR-H-paniculata_contig4465:2861..29211622930342.9428556-UTR-H-paniculata_contig4465:2861..2921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4465 2862..2921 -
1691481249.8347945-UTR-H-paniculata_contig4465:2861..29211691481249.8347945-UTR-H-paniculata_contig4465:2861..2921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4465 2862..2921 -
1622930343.0145726-UTR-H-paniculata_contig4465:3425..36711622930343.0145726-UTR-H-paniculata_contig4465:3425..3671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4465 3426..3671 -
1691481249.8769615-UTR-H-paniculata_contig4465:3425..36711691481249.8769615-UTR-H-paniculata_contig4465:3425..3671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4465 3426..3671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.9627068-CDS-H-paniculata_contig4465:2921..30641622930342.9627068-CDS-H-paniculata_contig4465:2921..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4465 2922..3064 -
1691481249.844453-CDS-H-paniculata_contig4465:2921..30641691481249.844453-CDS-H-paniculata_contig4465:2921..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4465 2922..3064 -
1622930342.9787428-CDS-H-paniculata_contig4465:3076..32241622930342.9787428-CDS-H-paniculata_contig4465:3076..3224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4465 3077..3224 -
1691481249.8544302-CDS-H-paniculata_contig4465:3076..32241691481249.8544302-CDS-H-paniculata_contig4465:3076..3224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4465 3077..3224 -
1622930342.9964228-CDS-H-paniculata_contig4465:3242..34251622930342.9964228-CDS-H-paniculata_contig4465:3242..3425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4465 3243..3425 -
1691481249.8674138-CDS-H-paniculata_contig4465:3242..34251691481249.8674138-CDS-H-paniculata_contig4465:3242..3425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4465 3243..3425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4465.11261.1

>prot_H-paniculata_contig4465.11261.1 ID=prot_H-paniculata_contig4465.11261.1|Name=mRNA_H-paniculata_contig4465.11261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MSTLRTVVSLAAEHDFEPEDMDVYAAYLNAPVEERLFVKLPPEFSPFSRD
IPFVRHLCKKPRPDNTLDDFLVGIGLQRSTTDPCFYFSRNEEGDTDILVA
VHVDDLVITGLDDFKHDKSRRFRMKDLGSLSRVLGMEVRRDCPNGTMSIS
QGTSARY*
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mRNA from alignment at H-paniculata_contig4465:2115..3671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4465.11261.1 ID=mRNA_H-paniculata_contig4465.11261.1|Name=mRNA_H-paniculata_contig4465.11261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1557bp|location=Sequence derived from alignment at H-paniculata_contig4465:2115..3671- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCAGACAAATGGCGCGCAGCAATGGAGGAGGAATGGAGGGCATTGAT GAAAAATGGAACATGAGAAAGCGAAGACCCGGGGAGGTTACCGGTAGGGC GGAAGGCGATTCGTACGAAAAGGATTTTCAAGCGGAAACTGAAGGAGGAC GGCAGCGTGGCACGGTACAAAGCGCGACTGGTAGCTCAAGGCTATTCACA GGTGGAGGGTGAAGATTTCTTTGAAACCAGCGCCCCCGTAGCTCGCATGT CAACGTTACGTACCGTTGTTAGCCTGGCCGCCGAACACGATTTCGAACCA GAAGACATGGACGTATATGCGGCCTATTTGAACGCTCCGGTAGAAGAACG GCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATAC CGTTTGTGCGCCACCTTTGTAAAAAGCCTGTTTGACCTCAAGCAGAGCGC CCGGATAATACTCTTGACGATTTTCTTGTTGGGATAGGACTCCAGCGTTC CACTACCGACCCATGCTTTTATTTCTCTCGCAACGAAGAGGGGGATACAG ACATTCTCGTGGCCGTCCATGTTGACGACCTGGTCATCACTGGACGTCAT TAGAAAGTAGACGACTTCAAACACGACAAAAGTCGGCGTTTCAGGATGAA AGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATGGAGGTACGACGTGACT GCCCCAATGGTACCATGTCAATATCTCAAGGTACATCCGCGAGGTACTGA AAAGATACTGTTTTAACAAGTGTCGAGGCGTGCCCACCCCTGTAAAGGGA AACGTGAAGAGTTTGGCACCTGAGTCCGCCGACTAGCTCCCCGAACCGAA ACCACTGGGGCTGCTGTCCGGGATAGGCGCAGGAGTACAAGAAAGCAGCT GTGGGAGAAGTGGTAATTCATCTGAATACAGAGGCATGGTAGGATCACTC ATGTACAGCTCGACAAGAACTAGACCTGATATATCATACGCGGTACACCA AGCAGCACGTCGTATGGACGACCATGTCAGGAAGACTTCCGTACATGCAA GCGGATTTTTCGTTATCTCAGTACTGTGTCTGACCTCGGCATTACATTCG GCGTTAAGAATAATGGCGACGGTGTGGAAGGATTTGTTGATGACGATTGG GCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATACGTATTCAAGCT AAACGGTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTATAGA GGTAGAGTACGTTGCTGGAGGAGAAGCGAGAAAGGTGACGGTATATCTTA GGGATTTACTAGGATCAATAGGTTTCGGATGCAGGGGGAGCACGACATTA TTTGAGAACAAGACAGCTATCAATCTCAGTAAGGGATCTAGCGCACACTG CAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGGCTC GAGAAGAAATATTGGAGTTGAAATACGTGCAGACCGGCAACCAACTTGCT GACATTTTAACGAAAGGACTCAGCAGAGTAAAGTTTCAGAGACTGAGAAA CTTTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig4465:2115..3671-

>mRNA_H-paniculata_contig4465.11261.1 ID=mRNA_H-paniculata_contig4465.11261.1|Name=mRNA_H-paniculata_contig4465.11261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4465:2115..3671- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACGTTACGTACCGTTGTTAGCCTGGCCGCCGAACACGATTTCGA
ACCAGAAGACATGGACGTATATGCGGCCTATTTGAACGCTCCGGTAGAAG
AACGGCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGAC
ATACCGTTTGTGCGCCACCTTTGTAAAAAGCCTATGTCAACGTTACGTAC
CGTTGTTAGCCTGGCCGCCGAACACGATTTCGAACCAGAAGACATGGACG
TATATGCGGCCTATTTGAACGCTCCGGTAGAAGAACGGCTGTTTGTTAAG
CTACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCCA
CCTTTGTAAAAAGCCTCGCCCGGATAATACTCTTGACGATTTTCTTGTTG
GGATAGGACTCCAGCGTTCCACTACCGACCCATGCTTTTATTTCTCTCGC
AACGAAGAGGGGGATACAGACATTCTCGTGGCCGTCCATGTTGACGACCT
GGTCATCACTGGACCGCCCGGATAATACTCTTGACGATTTTCTTGTTGGG
ATAGGACTCCAGCGTTCCACTACCGACCCATGCTTTTATTTCTCTCGCAA
CGAAGAGGGGGATACAGACATTCTCGTGGCCGTCCATGTTGACGACCTGG
TCATCACTGGACTAGACGACTTCAAACACGACAAAAGTCGGCGTTTCAGG
ATGAAAGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATGGAGGTACGACG
TGACTGCCCCAATGGTACCATGTCAATATCTCAAGGTACATCCGCGAGGT
ACTGATAGACGACTTCAAACACGACAAAAGTCGGCGTTTCAGGATGAAAG
ACTTGGGCTCCCTCTCGCGCGTGTTGGGAATGGAGGTACGACGTGACTGC
CCCAATGGTACCATGTCAATATCTCAAGGTACATCCGCGAGGTACTGA
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