mRNA_H-paniculata_contig44643.11260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44643.11260.1
Unique NamemRNA_H-paniculata_contig44643.11260.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.170e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 TMTRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYG-G*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            T TRP+IA+  R  A++C +P+  H RA + IL YV+RT+DLGIT+G G   G+ M  +AD+DYA+   +RRSV G  V+ G G I+W
Sbjct:   84 TQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISW 171
[Close]
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.210e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 TMTRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYG-G*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            T TRPDIA+ +R  A++C +P+  H RA + IL YV+RT+DLGIT+G G    + M  + D+DYA+   +RRSV G  V+ GGG I+W
Sbjct:  920 TQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISW 1007
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BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A4Q3EGL4_9SPHI (Uncharacterized protein n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EGL4_9SPHI)

HSP 1 Score: 80.5 bits (197), Expect = 2.110e-16
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    7 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            TRPDIA++V    ++  NP + H +A  ++++Y+ RT D  +TY   +  +E++ Y+DSD+A CQD+RRS  G   L+GGGAI+W
Sbjct:   52 TRPDIAYIVGVLGRYLSNPGMDHWKAAKRVMRYLKRTKDHMLTYRR-SDHLEIIGYSDSDFAGCQDSRRSTSGYVYLLGGGAISW 135
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BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A438GUF6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GUF6_VITVI)

HSP 1 Score: 77.8 bits (190), Expect = 4.250e-16
Identity = 36/85 (42.35%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    7 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            TRPDIA++V    ++  NP + H RA  ++++Y+ RT +  +TY   +  +E++ Y+DSD+A CQD+RRS  G   L+ GGAI+W
Sbjct:   20 TRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISW 103
[Close]
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A438G7Y4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis TaxID=3603 RepID=A0A438G7Y4_VITVI)

HSP 1 Score: 75.9 bits (185), Expect = 7.550e-16
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    7 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            TRPDI ++V    ++  NP + H RA  ++++Y+ RT +  +TY   +  +E++ Y+DSD+A CQD+RRS  G   L+ GGAI+W
Sbjct:    7 TRPDIPYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISW 90
[Close]
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: UPI0020096611 (secreted RxLR effector protein 161-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020096611)

HSP 1 Score: 79.0 bits (193), Expect = 8.080e-16
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    7 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            TRPDIA +V    ++  NP + H +AV ++L+Y+ RT D  +TY   +  +E++ Y+DSD+A CQD+RRS  G   ++ GGAI+W
Sbjct:   51 TRPDIAFIVGMLGRYLSNPGMDHWKAVKRVLRYLQRTKDYMLTYRK-SDQLEIIGYSDSDFAGCQDSRRSTSGYVFMLAGGAISW 134
[Close]
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.230e-16
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    7 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            TRPDIA VV   ++F ENP  AH  A +K+++Y+L+T D+GITY G   G ++ AY+D+D+A  +D+RRSV G  ++M G  + W
Sbjct:  327 TRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNG-LLGTKLTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVW 410
[Close]
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: UPI00155AFC16 (secreted RxLR effector protein 161-like n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155AFC16)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-15
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    7 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            TRPDIA++V    ++  NP + H RA  ++++Y+ RT +  +TY   +  +E + Y+DSD+A CQD+RRS  G   L+ GGAI+W
Sbjct:   20 TRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLEFIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISW 103
[Close]
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: UPI00155A12FE (secreted RxLR effector protein 161-like n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155A12FE)

HSP 1 Score: 77.0 bits (188), Expect = 1.290e-15
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    7 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            TRPDIA++V    ++  NP + H RA  ++++Y+ RT +  +TY   +  +E + Y+DSD+A CQD+RRS  G   L+ GGAI+W
Sbjct:   20 TRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLEFIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISW 103
[Close]
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: UPI00155A68F0 (secreted RxLR effector protein 161-like n=4 Tax=Vitis riparia TaxID=96939 RepID=UPI00155A68F0)

HSP 1 Score: 77.0 bits (188), Expect = 1.290e-15
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    7 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*NCGVEMLAYADSDYATCQDNRRSVFGRAVLMGGGAINW 261
            TRPDIA++V    ++  NP + H RA  ++++Y+ RT +  +TY   +  +E + Y+DSD+A CQD+RRS  G   L+ GGAI+W
Sbjct:   20 TRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLEFIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISW 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD60_9PHAE1.170e-1748.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE2.210e-1748.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4Q3EGL4_9SPHI2.110e-1643.53Uncharacterized protein n=1 Tax=Sphingobacteriacea... [more]
A0A438GUF6_VITVI4.250e-1642.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A438G7Y4_VITVI7.550e-1641.18Retrovirus-related Pol polyprotein from transposon... [more]
UPI00200966118.080e-1643.53secreted RxLR effector protein 161-like n=1 Tax=Sa... [more]
A0A225UK66_9STRA8.230e-1647.06Integrase, catalytic core protein (Fragment) n=1 T... [more]
UPI00155AFC161.090e-1542.35secreted RxLR effector protein 161-like n=1 Tax=Vi... [more]
UPI00155A12FE1.290e-1542.35secreted RxLR effector protein 161-like n=1 Tax=Vi... [more]
UPI00155A68F01.290e-1542.35secreted RxLR effector protein 161-like n=4 Tax=Vi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44643contigH-paniculata_contig44643:1..261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size261
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44643.11260.1prot_H-paniculata_contig44643.11260.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44643 115..258 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.837791-UTR-H-paniculata_contig44643:0..1141622930342.837791-UTR-H-paniculata_contig44643:0..114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44643 1..114 -
1691481249.7876434-UTR-H-paniculata_contig44643:0..1141691481249.7876434-UTR-H-paniculata_contig44643:0..114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44643 1..114 -
1622930342.8749914-UTR-H-paniculata_contig44643:258..2611622930342.8749914-UTR-H-paniculata_contig44643:258..261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44643 259..261 -
1691481249.8085136-UTR-H-paniculata_contig44643:258..2611691481249.8085136-UTR-H-paniculata_contig44643:258..261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44643 259..261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.8573391-CDS-H-paniculata_contig44643:114..2581622930342.8573391-CDS-H-paniculata_contig44643:114..258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44643 115..258 -
1691481249.798514-CDS-H-paniculata_contig44643:114..2581691481249.798514-CDS-H-paniculata_contig44643:114..258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44643 115..258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44643.11260.1

>prot_H-paniculata_contig44643.11260.1 ID=prot_H-paniculata_contig44643.11260.1|Name=mRNA_H-paniculata_contig44643.11260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MTRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*
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mRNA from alignment at H-paniculata_contig44643:1..261-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44643.11260.1 ID=mRNA_H-paniculata_contig44643.11260.1|Name=mRNA_H-paniculata_contig44643.11260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig44643:1..261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAATGACGCGACCCGACATCGCACACGTCGTGCGCACTACGGCAAAGTT
CTGTGAGAACCCACGAGTGGCGCACAGGAGAGCTGTGGTGAAAATTCTGC
AGTACGTACTAAGGACCGCGGACCTGGGAATCACCTACGGCGGATAGAAC
TGCGGGGTCGAAATGTTGGCTTACGCTGACTCGGACTACGCAACATGCCA
GGACAACCGACGCTCGGTCTTCGGCAGAGCGGTACTGATGGGAGGCGGCG
CCATTAATTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig44643:1..261-

>mRNA_H-paniculata_contig44643.11260.1 ID=mRNA_H-paniculata_contig44643.11260.1|Name=mRNA_H-paniculata_contig44643.11260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig44643:1..261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCGACCCGACATCGCACACGTCGTGCGCACTACGGCAAAGTTCTG
TGAGAACCCACGAGTGGCGCACAGGAGAGCTGTGGTGAAAATTCTGCAGT
ACGTACTAAGGACCGCGGACCTGGGAATCACCTACGGCGGATAGATGACG
CGACCCGACATCGCACACGTCGTGCGCACTACGGCAAAGTTCTGTGAGAA
CCCACGAGTGGCGCACAGGAGAGCTGTGGTGAAAATTCTGCAGTACGTAC
TAAGGACCGCGGACCTGGGAATCACCTACGGCGGATAG
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