prot_H-paniculata_contig44643.11260.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig44643.11260.1
Unique Nameprot_H-paniculata_contig44643.11260.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length48
Homology
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.560e-8
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    2 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYG 46
            TRPDIA+ +R  A++C +P+  H RA + IL YV+RT+DLGIT+G
Sbjct:  922 TRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFG 966          
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.180e-7
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    2 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG 47
            TRPDIA VV   ++F ENP  AH  A +K+++Y+L+T D+GITY G
Sbjct:  327 TRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNG 372          
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0
Query:    2 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYG 46
            TRP+IA+  R  A++C +P+  H RA + IL YV+RT+DLGIT+G
Sbjct:   86 TRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFG 130          
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A0J7JWL9_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JWL9_LASNI)

HSP 1 Score: 48.5 bits (114), Expect = 2.760e-5
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 0
Query:    2 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITY 45
            TRPD+A      ++FC NP  AH +   ++L+Y+ RT D GITY
Sbjct:   31 TRPDLAFAASALSRFCTNPEEAHWKLAKRVLRYLQRTIDYGITY 74          
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A2P4XFG4_9STRA (Retrovirus-related pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFG4_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.140e-5
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0
Query:    3 RPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG 47
            RPDIA  V   ++F ENP   H  A +K+++Y+L+T D+GITY G
Sbjct:  115 RPDIAVTVTKLSRFLENPGQKHWDAGIKVVRYLLKTKDVGITYDG 159          
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A2N9E5U6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9E5U6_FAGSY)

HSP 1 Score: 48.5 bits (114), Expect = 3.290e-5
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    2 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG 47
            T+PDI +VV   ++F  NPR+AH +A+ KIL+Y+ RT D  + Y G
Sbjct:  920 TQPDICYVVGLVSRFQSNPRLAHWKAIKKILRYLKRTMDYVLCYQG 965          
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI)

HSP 1 Score: 48.5 bits (114), Expect = 3.290e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    2 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG 47
            TRPD+++VV   +KF E P  AH  A  ++L+Y+ RT ++GIT+ G
Sbjct: 1097 TRPDLSYVVSVLSKFLERPSNAHWNAAKRVLKYLKRTLNVGITFDG 1142          
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A7S2R5M6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5M6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.480e-5
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    2 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITY 45
            TRPDIA  V   A+ CE P   H RA+++I+ Y+ RT +LGITY
Sbjct:  338 TRPDIAASVAMLARHCETPGAEHVRALLRIVGYLHRTKNLGITY 381          
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Match: A0A5A7ULF1_CUCME (Putative gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7ULF1_CUCME)

HSP 1 Score: 47.4 bits (111), Expect = 8.010e-5
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    2 TRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITY 45
            +RP+IA+VV T A++  +PR++H  AV +IL+YV  T+D GI Y
Sbjct:  213 SRPNIAYVVGTCARYQADPRMSHLEAVKRILKYVHGTSDFGILY 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44643.11260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5LC04_9PHAE4.560e-855.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225UK66_9STRA2.180e-754.35Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6H5KD60_9PHAE2.730e-753.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0J7JWL9_LASNI2.760e-545.45Retrovirus-related pol polyprotein from transposon... [more]
A0A2P4XFG4_9STRA3.140e-548.89Retrovirus-related pol Polyprotein n=1 Tax=Phytoph... [more]
A0A2N9E5U6_FAGSY3.290e-547.83Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A0J7K651_LASNI3.290e-545.65Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A7S2R5M6_9STRA4.480e-552.27Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5A7ULF1_CUCME8.010e-550.00Putative gag-pol polyprotein n=1 Tax=Cucumis melo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44643contigH-paniculata_contig44643:115..258 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44643.11260.1mRNA_H-paniculata_contig44643.11260.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig44643 1..261 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig44643.11260.1 ID=prot_H-paniculata_contig44643.11260.1|Name=mRNA_H-paniculata_contig44643.11260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MTRPDIAHVVRTTAKFCENPRVAHRRAVVKILQYVLRTADLGITYGG*
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