mRNA_H-paniculata_contig44640.11259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44640.11259.1
Unique NamemRNA_H-paniculata_contig44640.11259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A8J6D396_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D396_9ROSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.080e-8
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
            W  +SGA++HM+ +ST F  YTP        IADG+++ VAG G++ +    F        L KV H+P L C+L+S+S+ +K
Sbjct:  293 WILDSGASDHMTGNSTLFHTYTPCHDKSRIRIADGSYSPVAGVGEVQITENFF--------LDKVLHVPNLSCNLLSISKLTK 367          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A6P4Q4E7_GOSAR (probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4Q4E7_GOSAR)

HSP 1 Score: 59.3 bits (142), Expect = 3.780e-8
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
            W  +SGA++HM+ +ST F  YTP        IADG+++ VAG G++ +  + F        L KV H+P L C+L+S+S+ +K
Sbjct:  184 WILDSGASDHMTGNSTLFHTYTPCHDKFRIRIADGSYSPVAGVGEVQIT-ENFS-------LDKVLHVPNLSCNLLSISKLTK 258          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A1Q3ALF0_CEPFO (UBN2_3 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3ALF0_CEPFO)

HSP 1 Score: 57.0 bits (136), Expect = 2.330e-7
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   19 GSPEKWTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSKI 285
            G+ E+W  +SGA++HM+ DS+ F  Y P  T     IADG+F+ VAG G + ++ K         VL  V  +P L  +L+S+S+ +K+
Sbjct:  361 GNIEQWIVDSGASDHMTGDSSLFSTYNPCSTDSTIRIADGSFSKVAGIGSV-VITKDI-------VLNTVLFVPNLDYNLLSVSQLNKV 441          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A2Z7C059_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7C059_9LAMI)

HSP 1 Score: 55.1 bits (131), Expect = 1.100e-6
Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSE 273
            W  +SGAT+HM+  S  F +YTP   +    IADG+ + +AG G + +        S    L  V H+P L C+L+S+S+
Sbjct:  297 WIVDSGATDHMTGSSGLFSSYTPCAGNKKIRIADGSLSPIAGIGSIAI--------SKTLTLHDVLHVPNLSCNLLSVSK 368          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A1S2XBU5_CICAR (uncharacterized protein LOC101513206 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XBU5_CICAR)

HSP 1 Score: 55.1 bits (131), Expect = 1.180e-6
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
            W  +SGAT+HM+ +S+ F +Y+P   +   +IADG+ + +AG G + L  K          L+ V H+P L C+L+S+++ +K
Sbjct:  286 WIIDSGATDHMTGESSLFSSYSPCAGNHKIKIADGSLSAIAGKGSVILSPK--------LTLKDVLHVPNLSCNLLSITKLTK 360          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A438GDM5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GDM5_VITVI)

HSP 1 Score: 54.7 bits (130), Expect = 1.600e-6
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
            W  +SGA++HM+ D+T F  Y+  P ++   IADG+ + VAG G + L        S    L  V  +P L C+L+S+S+ +K
Sbjct:   44 WIVDSGASDHMTGDTTIFNTYSSCPNNLTVRIADGSLSKVAGTGSIVL--------SRDLTLNSVLLVPNLNCNLLSISKLTK 118          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A438DI24_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DI24_VITVI)

HSP 1 Score: 54.3 bits (129), Expect = 2.160e-6
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSKITQ 291
            W  +SGAT+HM+  S  F +Y P   +   +IADG+ + +AG G + +        S +  L  V H+P L C+L+S+S  S++ +
Sbjct:  268 WIIDSGATDHMTGSSQIFSSYKPCAGNKKIKIADGSLSAIAGKGSVFI--------SPSLTLHNVLHVPNLSCNLLSISHESELRE 345          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: UPI0008FEBC19 (uncharacterized protein LOC109122249 n=1 Tax=Vitis vinifera TaxID=29760 RepID=UPI0008FEBC19)

HSP 1 Score: 53.9 bits (128), Expect = 2.870e-6
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
            W  +SGA++HM+     F  Y+P   ++  +IADGT + VAG G + +        S +  L  V H+P L C+L+S+S+ +K
Sbjct:  386 WIVDSGASDHMTDAHHLFSTYSPCAGNLKVKIADGTLSPVAGKGSIRI--------SESITLNPVLHVPNLSCNLLSISQLTK 460          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A438FAU4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FAU4_VITVI)

HSP 1 Score: 53.9 bits (128), Expect = 2.950e-6
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
            W  +SGA++HM+ D T F+ Y+  P ++   IADG+ + VAG G + L        S    L  V  IP L C+L+S+S+ +K
Sbjct:  241 WIVDSGASDHMTGDVTIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVL--------SRDLTLNSVLLIPNLDCNLLSISKLTK 315          
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A5C6A5_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C6A5_VITVI)

HSP 1 Score: 53.9 bits (128), Expect = 3.020e-6
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
            W  +SGA++HM+     F  Y+P   ++  +IADGT + VAG G + +        S +  L  V H+P L C+L+S+S+ +K
Sbjct:  414 WIVDSGASDHMTDAHHLFSTYSPCAGNLKVKIADGTLSPVAGKGSIRI--------SESITLNPVLHVPNLSCNLLSISQLTK 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J6D396_9ROSI1.080e-838.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6P4Q4E7_GOSAR3.780e-838.55probable LRR receptor-like serine/threonine-protei... [more]
A0A1Q3ALF0_CEPFO2.330e-737.08UBN2_3 domain-containing protein n=1 Tax=Cephalotu... [more]
A0A2Z7C059_9LAMI1.100e-636.25Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A1S2XBU5_CICAR1.180e-634.94uncharacterized protein LOC101513206 n=1 Tax=Cicer... [more]
A0A438GDM5_VITVI1.600e-636.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A438DI24_VITVI2.160e-633.72Retrovirus-related Pol polyprotein from transposon... [more]
UPI0008FEBC192.870e-634.94uncharacterized protein LOC109122249 n=1 Tax=Vitis... [more]
A0A438FAU4_VITVI2.950e-637.35Retrovirus-related Pol polyprotein from transposon... [more]
A5C6A5_VITVI3.020e-634.94Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44640contigH-paniculata_contig44640:540..830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.779097-CDS-H-paniculata_contig44640:539..8301622930342.779097-CDS-H-paniculata_contig44640:539..830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44640 540..830 +
1691481249.7777658-CDS-H-paniculata_contig44640:539..8301691481249.7777658-CDS-H-paniculata_contig44640:539..830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44640 540..830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44640.11259.1prot_H-paniculata_contig44640.11259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44640 540..830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44640.11259.1

>prot_H-paniculata_contig44640.11259.1 ID=prot_H-paniculata_contig44640.11259.1|Name=mRNA_H-paniculata_contig44640.11259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
AAVADAGSPEKWTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFAT
VAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSKITQ
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mRNA from alignment at H-paniculata_contig44640:540..830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44640.11259.1 ID=mRNA_H-paniculata_contig44640.11259.1|Name=mRNA_H-paniculata_contig44640.11259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig44640:540..830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCTGTTGCCGACGCAGGAAGTCCCGAAAAGTGGACCTCAGAGTCGGG AGCAACCGAGCACATGTCGTCTGACTCTACGACGTTCGAAAACTACACGC CGGCGCCGACTAGCATCATGTGCGAGATAGCTGACGGGACATTCGCGACG GTGGCGGGATTCGGGAAGCTGGGGCTCCTTATGAAACAGTTCGGGGGCAA CTCCATTGCAACGGTGCTGCAGAAGGTTGCGCACATACCCGAACTAGGAT GCGACCTCATCTCTATGAGCGAGACGTCTAAGATCACCCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig44640:540..830+

>mRNA_H-paniculata_contig44640.11259.1 ID=mRNA_H-paniculata_contig44640.11259.1|Name=mRNA_H-paniculata_contig44640.11259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig44640:540..830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCTGTTGCCGACGCAGGAAGTCCCGAAAAGTGGACCTCAGAGTCGGG
AGCAACCGAGCACATGTCGTCTGACTCTACGACGTTCGAAAACTACACGC
CGGCGCCGACTAGCATCATGTGCGAGATAGCTGACGGGACATTCGCGACG
GTGGCGGGATTCGGGAAGCTGGGGCTCCTTATGAAACAGTTCGGGGGCAA
CTCCATTGCAACGGTGCTGCAGAAGGTTGCGCACATACCCGAACTAGGAT
GCGACCTCATCTCTATGAGCGAGACGTCTAAGATCACCCAAGCCGCTGTT
GCCGACGCAGGAAGTCCCGAAAAGTGGACCTCAGAGTCGGGAGCAACCGA
GCACATGTCGTCTGACTCTACGACGTTCGAAAACTACACGCCGGCGCCGA
CTAGCATCATGTGCGAGATAGCTGACGGGACATTCGCGACGGTGGCGGGA
TTCGGGAAGCTGGGGCTCCTTATGAAACAGTTCGGGGGCAACTCCATTGC
AACGGTGCTGCAGAAGGTTGCGCACATACCCGAACTAGGATGCGACCTCA
TCTCTATGAGCGAGACGTCTAAGATCACCCAA
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