mRNA_H-paniculata_contig44640.11259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A8J6D396_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D396_9ROSI) HSP 1 Score: 60.8 bits (146), Expect = 1.080e-8 Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
W +SGA++HM+ +ST F YTP IADG+++ VAG G++ + F L KV H+P L C+L+S+S+ +K
Sbjct: 293 WILDSGASDHMTGNSTLFHTYTPCHDKSRIRIADGSYSPVAGVGEVQITENFF--------LDKVLHVPNLSCNLLSISKLTK 367
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A6P4Q4E7_GOSAR (probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4Q4E7_GOSAR) HSP 1 Score: 59.3 bits (142), Expect = 3.780e-8 Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
W +SGA++HM+ +ST F YTP IADG+++ VAG G++ + + F L KV H+P L C+L+S+S+ +K
Sbjct: 184 WILDSGASDHMTGNSTLFHTYTPCHDKFRIRIADGSYSPVAGVGEVQIT-ENFS-------LDKVLHVPNLSCNLLSISKLTK 258
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A1Q3ALF0_CEPFO (UBN2_3 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3ALF0_CEPFO) HSP 1 Score: 57.0 bits (136), Expect = 2.330e-7 Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 19 GSPEKWTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSKI 285
G+ E+W +SGA++HM+ DS+ F Y P T IADG+F+ VAG G + ++ K VL V +P L +L+S+S+ +K+
Sbjct: 361 GNIEQWIVDSGASDHMTGDSSLFSTYNPCSTDSTIRIADGSFSKVAGIGSV-VITKDI-------VLNTVLFVPNLDYNLLSVSQLNKV 441
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A2Z7C059_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7C059_9LAMI) HSP 1 Score: 55.1 bits (131), Expect = 1.100e-6 Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSE 273
W +SGAT+HM+ S F +YTP + IADG+ + +AG G + + S L V H+P L C+L+S+S+
Sbjct: 297 WIVDSGATDHMTGSSGLFSSYTPCAGNKKIRIADGSLSPIAGIGSIAI--------SKTLTLHDVLHVPNLSCNLLSVSK 368
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A1S2XBU5_CICAR (uncharacterized protein LOC101513206 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XBU5_CICAR) HSP 1 Score: 55.1 bits (131), Expect = 1.180e-6 Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
W +SGAT+HM+ +S+ F +Y+P + +IADG+ + +AG G + L K L+ V H+P L C+L+S+++ +K
Sbjct: 286 WIIDSGATDHMTGESSLFSSYSPCAGNHKIKIADGSLSAIAGKGSVILSPK--------LTLKDVLHVPNLSCNLLSITKLTK 360
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A438GDM5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GDM5_VITVI) HSP 1 Score: 54.7 bits (130), Expect = 1.600e-6 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
W +SGA++HM+ D+T F Y+ P ++ IADG+ + VAG G + L S L V +P L C+L+S+S+ +K
Sbjct: 44 WIVDSGASDHMTGDTTIFNTYSSCPNNLTVRIADGSLSKVAGTGSIVL--------SRDLTLNSVLLVPNLNCNLLSISKLTK 118
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A438DI24_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DI24_VITVI) HSP 1 Score: 54.3 bits (129), Expect = 2.160e-6 Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSKITQ 291
W +SGAT+HM+ S F +Y P + +IADG+ + +AG G + + S + L V H+P L C+L+S+S S++ +
Sbjct: 268 WIIDSGATDHMTGSSQIFSSYKPCAGNKKIKIADGSLSAIAGKGSVFI--------SPSLTLHNVLHVPNLSCNLLSISHESELRE 345
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: UPI0008FEBC19 (uncharacterized protein LOC109122249 n=1 Tax=Vitis vinifera TaxID=29760 RepID=UPI0008FEBC19) HSP 1 Score: 53.9 bits (128), Expect = 2.870e-6 Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
W +SGA++HM+ F Y+P ++ +IADGT + VAG G + + S + L V H+P L C+L+S+S+ +K
Sbjct: 386 WIVDSGASDHMTDAHHLFSTYSPCAGNLKVKIADGTLSPVAGKGSIRI--------SESITLNPVLHVPNLSCNLLSISQLTK 460
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A0A438FAU4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FAU4_VITVI) HSP 1 Score: 53.9 bits (128), Expect = 2.950e-6 Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
W +SGA++HM+ D T F+ Y+ P ++ IADG+ + VAG G + L S L V IP L C+L+S+S+ +K
Sbjct: 241 WIVDSGASDHMTGDVTIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVL--------SRDLTLNSVLLIPNLDCNLLSISKLTK 315
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Match: A5C6A5_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C6A5_VITVI) HSP 1 Score: 53.9 bits (128), Expect = 3.020e-6 Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 34 WTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATVAGFGKLGLLMKQFGGNSIATVLQKVAHIPELGCDLISMSETSK 282
W +SGA++HM+ F Y+P ++ +IADGT + VAG G + + S + L V H+P L C+L+S+S+ +K
Sbjct: 414 WIVDSGASDHMTDAHHLFSTYSPCAGNLKVKIADGTLSPVAGKGSIRI--------SESITLNPVLHVPNLSCNLLSISQLTK 488 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44640.11259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44640.11259.1 >prot_H-paniculata_contig44640.11259.1 ID=prot_H-paniculata_contig44640.11259.1|Name=mRNA_H-paniculata_contig44640.11259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp AAVADAGSPEKWTSESGATEHMSSDSTTFENYTPAPTSIMCEIADGTFATback to top mRNA from alignment at H-paniculata_contig44640:540..830+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44640.11259.1 ID=mRNA_H-paniculata_contig44640.11259.1|Name=mRNA_H-paniculata_contig44640.11259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig44640:540..830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44640:540..830+ >mRNA_H-paniculata_contig44640.11259.1 ID=mRNA_H-paniculata_contig44640.11259.1|Name=mRNA_H-paniculata_contig44640.11259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig44640:540..830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |