prot_H-paniculata_contig4464.11257.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4464.11257.1
Unique Nameprot_H-paniculata_contig4464.11257.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length109
Homology
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: D7G5N9_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N9_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 2.010e-70
Identity = 96/108 (88.89%), Postives = 98/108 (90.74%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTGCKFRWNE 108
            MLFCPT G+LLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKI LKKK VDDIMGGDDAWANVDKTQ TCP C NKEAFF+ VQLRSADEPMTCFYKCT CK RW E
Sbjct:    1 MLFCPTDGSLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIALKKKAVDDIMGGDDAWANVDKTQTTCPFCNNKEAFFLMVQLRSADEPMTCFYKCTNCKQRWKE 108          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.420e-47
Identity = 68/112 (60.71%), Postives = 81/112 (72.32%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPN----KEAFFMQVQLRSADEPMTCFYKCTGCKFRWNE 108
            MLFCPTCGNLLMVE+  +G  RF CQTCPY+HP+    K+T+ + L++K VDD++GG DAW NVDK    C  C +    KEA+F Q QLRSADEPMT FYKC  C FRWNE
Sbjct:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.250e-44
Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTGCKFRWNE 108
            M FCPTCGNLLMVE    G  RFCCQTCPYI+ +  + K+  K+ L++K VDD++GGD+AW NVD+T   CP C + +A+FMQ+Q+RSADEP T FYKCTGCK +WN+
Sbjct:    1 MHFCPTCGNLLMVEPDSDGM-RFCCQTCPYIYKI--NQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: A0A7S0PIB0_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PIB0_CAFRO)

HSP 1 Score: 142 bits (358), Expect = 9.160e-42
Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTGCKFRWNE 108
            MLFCPTCGN+L++E G    T+F C TCPYI  +  + KIT+ I L++KTVDD++GG  AW NVD+T A CP C ++ A+FMQ+Q+RSADEPMT FYKC  C  RWN+
Sbjct:   16 MLFCPTCGNMLLIEGG--AGTKFFCTTCPYIQRV--TTKITKSITLERKTVDDVLGGAAAWENVDQTDALCPACGHRRAYFMQLQIRSADEPMTTFYKCVACSGRWND 119          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: A0A1Y1VKS4_9FUNG (DNA-directed RNA polymerase subunit n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1VKS4_9FUNG)

HSP 1 Score: 141 bits (356), Expect = 1.320e-41
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 0
Query:    3 FCPTCGNLLMVESGPQGWTRFCCQTCPYIHPM-EPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTGCKFRWNE 108
            FCP+CGN+L+++   QG   F CQTCPY+ P+  P  ++T+    K+K VDD++GG  AW NVD T+ATCPKC N +AFFMQ+Q RSADEPMT FYKCT C F+W E
Sbjct:    4 FCPSCGNMLLLQLNLQGIQEFYCQTCPYVFPIIRPQTQVTQ---FKRKEVDDVLGGAKAWENVDSTEATCPKCENGKAFFMQIQTRSADEPMTIFYKCTECGFQWRE 107          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: A0A058ZBP1_FONAL (DNA-directed RNA polymerase subunit n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZBP1_FONAL)

HSP 1 Score: 140 bits (353), Expect = 3.890e-41
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQ--GWTRFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTGCKFRWNE 108
            MLFCP CGN+L+V S     G  +F CQTCPY+H ++   KI+ +I+LK+K VDD++GG+ +W NVD T+  CPKC N+ A+FMQ+Q+RSADEPM+ FYKCT C  +W E
Sbjct:    1 MLFCPGCGNVLLVNSDASDIGDFQFACQTCPYVHSIKR--KISSRIILKRKEVDDVLGGEGSWDNVDSTEVPCPKCDNRRAYFMQIQIRSADEPMSTFYKCTKCAAQWRE 108          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: D5AAK0_PICSI (DNA-directed RNA polymerase subunit n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5AAK0_PICSI)

HSP 1 Score: 140 bits (353), Expect = 4.020e-41
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQGWT-RFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTG--CKFRWNE 108
            M FCPTCGNLL +E      + RF C TCPY+ P+E   KI++K+ LKKK VDD+ GG++AW NVD+T+ATCPKC   +AFFMQ+Q+RSADEPM+ FYKC    C+FRW +
Sbjct:    1 MEFCPTCGNLLQIEHPYMSQSLRFFCPTCPYVFPIER--KISKKLQLKKKEVDDVFGGEEAWKNVDRTEATCPKCSFGKAFFMQIQIRSADEPMSTFYKCCNNQCQFRWRQ 109          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: A0A7S0RJ62_9CHLO (DNA-directed RNA polymerase subunit n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RJ62_9CHLO)

HSP 1 Score: 139 bits (349), Expect = 1.490e-40
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTGCKFRWNE 108
            M FCPTCG LLMVE       R+ CQTCPY++ ++   KI ++ VL+ K VDD++GGD+AWANVD+T+ +CPKC + +A+FMQVQ RSADEPMT FYKC  C  RW +
Sbjct:    2 MTFCPTCGTLLMVEYCELTRLRYACQTCPYVYMIDR--KIVKEHVLETKEVDDVLGGDEAWANVDRTEVSCPKCDHGQAYFMQVQTRSADEPMTIFYKCCKCANRWKD 107          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: A0A0D6R9A9_ARACU (DNA-directed RNA polymerase subunit n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R9A9_ARACU)

HSP 1 Score: 139 bits (349), Expect = 1.680e-40
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQGWT---RFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTG--CKFRWNE 108
            M FCPTCGN+L +E  P G     RF C TCPY+ P++   KIT+KI L KK VDD+ GG++AW NVD+T+ATCPKC + +A+FMQ+Q+RSADEPM+ FYKC    C+FRW +
Sbjct:    1 MEFCPTCGNMLQIER-PYGVIKALRFFCPTCPYVFPIK--GKITKKIPLAKKEVDDVFGGEEAWKNVDRTEATCPKCNHGQAYFMQIQIRSADEPMSTFYKCCNFQCQFRWRQ 110          
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Match: A0A077ZVQ1_STYLE (DNA-directed RNA polymerase subunit n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A077ZVQ1_STYLE)

HSP 1 Score: 138 bits (348), Expect = 2.050e-40
Identity = 60/108 (55.56%), Postives = 81/108 (75.00%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKTVDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCTGCKFRWNE 108
            MLFCPTC NLL++E     + RF C+TCPY+  +E +    +K+ L++K VDD++GG +AW NVD+ +A CPKC NK A+FMQ+Q+RSADEPMT FYKCT C ++W E
Sbjct:    1 MLFCPTCANLLLIEKTHSDF-RFFCKTCPYVFVVEQN--FEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNNKRAYFMQIQIRSADEPMTTFYKCTQCSYQWRE 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4464.11257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N9_ECTSI2.010e-7088.89DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CB68_9STRA2.420e-4760.71DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024UTD8_9STRA2.250e-4460.19DNA-directed RNA polymerase subunit n=8 Tax=Saprol... [more]
A0A7S0PIB0_CAFRO9.160e-4258.33DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]
A0A1Y1VKS4_9FUNG1.320e-4157.94DNA-directed RNA polymerase subunit n=3 Tax=Neocal... [more]
A0A058ZBP1_FONAL3.890e-4155.45DNA-directed RNA polymerase subunit n=1 Tax=Fontic... [more]
D5AAK0_PICSI4.020e-4158.56DNA-directed RNA polymerase subunit n=1 Tax=Picea ... [more]
A0A7S0RJ62_9CHLO1.490e-4057.41DNA-directed RNA polymerase subunit n=1 Tax=Pyrami... [more]
A0A0D6R9A9_ARACU1.680e-4057.52DNA-directed RNA polymerase subunit n=2 Tax=Arauca... [more]
A0A077ZVQ1_STYLE2.050e-4055.56DNA-directed RNA polymerase subunit n=2 Tax=Oxytri... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 2..55
e-value: 3.9E-9
score: 46.4
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 1..35
e-value: 9.0E-11
score: 41.5
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 69..108
e-value: 6.4E-20
score: 82.2
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 69..106
e-value: 1.4E-18
score: 66.4
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 71..106
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 67..107
score: 14.381
IPR006288Transcription factor STIGRFAMTIGR01384TIGR01384coord: 3..108
e-value: 1.4E-18
score: 65.4
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..108
e-value: 1.9E-30
score: 103.6
NoneNo IPR availableGENE3D2.20.25.10coord: 57..108
e-value: 7.0E-21
score: 75.3
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..107
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 1..107
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 48..108
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 3..28

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4464contigH-paniculata_contig4464:1374..3132 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4464.11257.1mRNA_H-paniculata_contig4464.11257.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4464 411..3440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4464.11257.1 ID=prot_H-paniculata_contig4464.11257.1|Name=mRNA_H-paniculata_contig4464.11257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MLFCPTCGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKT
VDDIMGGDDAWANVDKTQATCPKCPNKEAFFMQVQLRSADEPMTCFYKCT
GCKFRWNE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR001222Znf_TFIIS
IPR006288TFS
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR019761DNA-dir_RNA_pol-M_15_CS