mRNA_H-paniculata_contig4439.11214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4439.11214.1
Unique NamemRNA_H-paniculata_contig4439.11214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4439.11214.1 vs. uniprot
Match: D7FZQ4_ECTSI (Helicase ATP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZQ4_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.430e-42
Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = 2 
Query:  347 FVEGKHQDYAENIGAQVEFIGLLAMVVDRVPCKEGTIPLAELNYFTKNPERAARMDNWSARIKQFQDDLTGMPEEDKMRLPVPVGEPLDSSIFQFVPTVSACHPLNERWTGDQRELFQ 700
            FV G+H D+AENIG QVEF+GLLAM+VDRVPCK G  PL E+NYFTKNPERAARM++WS  IK FQD LTGMPEEDKMRLPVPVGEPLDSSIFQ + + ++  P+    + D+  L +
Sbjct:  987 FVTGRHADHAENIGVQVEFMGLLAMIVDRVPCKPGDTPLREVNYFTKNPERAARMESWSGIIKDFQDGLTGMPEEDKMRLPVPVGEPLDSSIFQVI-SANSFKPIEPVSSFDKFRLMR 1103
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BLAST of mRNA_H-paniculata_contig4439.11214.1 vs. uniprot
Match: A0A836CAV0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.300e-20
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 2 
Query:  347 FVEGKHQDYAENIGAQVEFIGLLAMVVDRVPCKEGTIPLAELNYFTKNPERAARMDNWSARIKQFQDDLTGMPEEDKMRLPVPVGEPLDSSIFQFVPTVSACHPLNE 667
            F EG+ QDYAE    Q+EF GLL  ++DRVP + G  PL E  +F K P+R ARM+ +  R+++ Q  L G+PEE KM+LPVP+ +PLDS +F  V   S   PL +
Sbjct:  939 FAEGRPQDYAEIQAVQIEFCGLLLALIDRVPMEPGGTPLQEHPFFMKAPDRNARMEEFLKRLEEQQQLLVGLPEEGKMKLPVPLDQPLDSRVFAIV-LASGYAPLGQ 1044
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4439.11214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZQ4_ECTSI2.430e-4266.95Helicase ATP-binding domain-containing protein n=2... [more]
A0A836CAV0_9STRA1.300e-2047.66P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4439contigH-paniculata_contig4439:8192..12381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3.4e-27
Seed eggNOG ortholog2880.D7FZQ4
Preferred nameDDX60
KEGG koko:K20103
Hectar predicted targeting categoryother localisation
GOsGO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0032101,GO:0032103,GO:0039531,GO:0039533,GO:0039535,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043902,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045111,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0065007,GO:0080134,GO:0097159,GO:1900245,GO:1900246,GO:1901363,GO:1902531,GO:1902533
EggNOG free text desc.helicase activity
EggNOG OGsCOG4581@1,KOG0949@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons4
Model size738
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4439.11214.1prot_H-paniculata_contig4439.11214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4439 8610..12352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930337.2027252-UTR-H-paniculata_contig4439:8191..86091622930337.2027252-UTR-H-paniculata_contig4439:8191..8609Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 8192..8609 +
1691481247.3281434-UTR-H-paniculata_contig4439:8191..86091691481247.3281434-UTR-H-paniculata_contig4439:8191..8609Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 8192..8609 +
1622930337.316396-UTR-H-paniculata_contig4439:12352..123811622930337.316396-UTR-H-paniculata_contig4439:12352..12381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 12353..12381 +
1691481247.383735-UTR-H-paniculata_contig4439:12352..123811691481247.383735-UTR-H-paniculata_contig4439:12352..12381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 12353..12381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930337.2246523-CDS-H-paniculata_contig4439:8609..86421622930337.2246523-CDS-H-paniculata_contig4439:8609..8642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 8610..8642 +
1691481247.3431473-CDS-H-paniculata_contig4439:8609..86421691481247.3431473-CDS-H-paniculata_contig4439:8609..8642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 8610..8642 +
1622930337.2593517-CDS-H-paniculata_contig4439:9918..100571622930337.2593517-CDS-H-paniculata_contig4439:9918..10057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 9919..10057 +
1691481247.3531635-CDS-H-paniculata_contig4439:9918..100571691481247.3531635-CDS-H-paniculata_contig4439:9918..10057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 9919..10057 +
1622930337.2726288-CDS-H-paniculata_contig4439:11426..114641622930337.2726288-CDS-H-paniculata_contig4439:11426..11464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 11427..11464 +
1691481247.3613195-CDS-H-paniculata_contig4439:11426..114641691481247.3613195-CDS-H-paniculata_contig4439:11426..11464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 11427..11464 +
1622930337.2932324-CDS-H-paniculata_contig4439:12271..123521622930337.2932324-CDS-H-paniculata_contig4439:12271..12352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 12272..12352 +
1691481247.3736613-CDS-H-paniculata_contig4439:12271..123521691481247.3736613-CDS-H-paniculata_contig4439:12271..12352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 12272..12352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4439.11214.1

>prot_H-paniculata_contig4439.11214.1 ID=prot_H-paniculata_contig4439.11214.1|Name=mRNA_H-paniculata_contig4439.11214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MVVDRVPCKEGTIPLAELNYFTKNPERAARMDNWSARIKQFQDDLTGMPE
EDKMRLPVPVGEPLDSSIFQFVPTVSACHPLNERWTGDQRELFQAD*
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mRNA from alignment at H-paniculata_contig4439:8192..12381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4439.11214.1 ID=mRNA_H-paniculata_contig4439.11214.1|Name=mRNA_H-paniculata_contig4439.11214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4190bp|location=Sequence derived from alignment at H-paniculata_contig4439:8192..12381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAGAAGCGTCGGTGGAAAGTCGTTCTCATTTGTTCGCTTTTGCTCATC
AATTTTTATCACACTTTGCATTGTTCTACGCTCTAACACGGCCACGCACA
CCCGTGGTCAGATGTCATGCCTTAGATCGCCCGACGGCGGGTCCGAGTAG
CTGCACTGATACGCTGAAGAATTGCTCCATTCACGAGCTAGTTTGCCGCC
TTTTTTCTCGAGGTGATGGAGTCTTAACGCCAAAACTGTATCGTGTGATT
CGGGGTGACTGAGCGAATCGATTGGTACCGAGTTTGCCCGGATCCGAGAA
TAGGTCGCTGTGAATAACGCGGTAATACTTTCTCCTGTCCTTTTAGTTTG
TGGAGGGGAAACACCAGGACTACGCGGAGAATATCGGTGCTCAAGTGGAA
TTTATCGGACTGCTGGCCATGGTGGTGGACAGAGTGCCCTGCAAGGAAGG
GGTGAGTAGATTGATACGCTATGCTTGCTTGCGACAGAAAACAAACAAAC
GGTTCTGTTCATGTTTTGTAGCGATGGGCGTACCTATTAGTACGTTGTGC
GTATTAAGGTATGAAGGTTTTTTTTTCTTAGTTGGGTTTTTGTGTTTAGC
CCGAGGCCGGGTCGGGTCGGTTTTTTTTTTCCTTCTTGTGGTTTTTGATT
CCCGTTTGATGAAGAACTGTGCATGACCGAACGAATCGATAGACTGTTGT
TATTCTTCTTTCAATGAGGTTTAGCTGGCGGGCTCTTCTGTGGTGGCTTT
TTCCTTGGGATGTTTTGGTTTGAAGACAGGTTTCTGTGTAGTAGGCATTA
TTTTGAATACTCGAGCGGTTATTAACTCTAAGCTCCGGAGGCTTTTCGTC
AAAAATGGTTAAAGGGAGGAAGGTAGTTGATGATTGTACTGGAAGGTTAT
TTGCTTTTGTCCTTACTGCAGAGGGTTTCTTCATTGTCGTTTTTTTTGTT
TTTTAAATAACAAACATGGCGTGGATGATGTACTCCTGTACTACAAAGGT
GTACATACAAATGTAGTAAAAGCAAGCTATTTAGTTTGTCCTCGGGTTTC
ATTTTTCGGGTAGGTTCTCGTCGTTTGCATTGATTTTGAAAATTGTAGCG
TGTTGGTACGAGCCGTATGGTGCTTATTTTGAATCACCCATTGAATACAT
GTAGTACAGTCAGAGTAAATCGTATTTTTTCTACATTTTTTCAAGTTTGC
ACTCTTGAAACACATTTTCTGAAAAAGGTGCCATGGCAGGAGCGTAGTCT
ATGCTCCACTGGTCGCCAAGTAGTACAATATAGAGGTTGTACTTATGGCT
TGAGAAGTTTTTTTTTTTTGCAGACCGGTTGTTTCATCTATTTATGTTTA
TACATACTCGACGGCCAAAAATCGTATGTACAAGCCTTGTTATGGGTCAA
CGATGGCGATATAGATTTATCTATCCTGCCATCATGGATTGACTTCTTGT
ACGATGACAACAGCCGTATGTATGTATGTATCTATCTGTATATTTCTCTC
TTTCTCTATATATATACCATCTTGGCCGCCAAACGTGTTGAGGCTTTGCT
CTTTTTACTCATGCGTGGGTATGCCAAATGAAGTTATGTACCGCTGCCCG
ATACTTGCGAGCCTAGTTTTCGTTCATTTTGGATGTTATCTCTATCTTGA
GACAATTTTTGAAAAAATCGATATCTGGGGGTATAGGTTCAATTTTGGAT
GAACGTTTTTGCGCCATGCTTGGACAGACCATTCCTCTGGCGGAGCTGAA
TTACTTCACCAAAAACCCTGAGAGGGCGGCGAGGATGGATAACTGGAGCG
CTCGGATCAAGCAGTTCCAGGACGACCTCACCGGGATGCCGGAGGAAGAC
AAGATGCGCCTGCCAGGTATGAGTGTAGTTGTGATTGCTTACACGCCCCG
GGCGAGGGATGGTAGTGAAGGAGATCCGTTAGTAACGCTTTCCCCTCTGC
AAAAAATAATTTGTGATACCTTGAAGTTGTAGCTCTCAATTGGAGCACAT
TAGTAAAATGGTTGTTTTTTTGTAATATATATATATATATATATAATATG
GTTATAAGTACACTTTTCCTAACGTTTAATCTGAAATGTTGGTTTATTTT
TGTTTTTTTGTTCTGTTGTACAGTTTTTTTTTTCTTTACATATTTAGTGT
GGTAATTGAGAAGATAGGTGTAGAGTTAGTTGTCGGTGGTTGTGAATCGG
TTTAAGGTACATTCTGCAAGGTGCAGTACGTGAATCGTTGTAAGGTACAT
TCTGTAGTGGCAGCGGGAACAAAATGTACCTTGTTCAGTCCAAGTGCGGT
TTATCCAAGTGCAGGTCCCTTAACTGAATCCTACTGCCAGGAAAAATATT
TCATGCAGTTTTGACGCACATAGCGCACAGCAATACCTGAGGTAGGGCTA
CATGCTGTACATACAAACATATATCGAACGAGTTGGCTGCTGAACGATTG
TGACGATGTGAGGCTGTTTGTTTGAGAAATGAATGTTTTCACCCCTGGAC
AAACATAAATACGTGAAGCATTCCTAATGAATAGGAATCATCCGCAAGAA
GGATCAGAATGTGAGGGCACATGGAATAAAGTGTTGACCGTATTGAATCG
TTTTGTAAGTCTTTTTTTTAGAAAGAGCAATCGCTCATTTGGTAGGGGGG
TCCTGGGATGGCACATGGAATATAAGAGCTAACTCATCCTGAACAAACGT
CCAGGCGACGACACTTGTACCTTTTCGTCGTAACCACTCCAAGGGTTCAG
TATTCGCTATTAACCATGGCGTGAATGCTTTTTTTTAGATGATTTTGTGT
GGATACTGGACACTGTGTTGCAGGCAAGCGCCATGCTGATTCGCCTTTTT
TTGCCTTTGCCACATGCACGACGATTTGGACAGCCCTCGTGGGGTTAGTT
AGTACGGCAGTCGGTAGGTTCTTGATAAGTTGTTGATGAGCCTAAATGTG
ATTGTAAGTTTGGCTATTTGGTTTGTTGTATGTTTCCGTTCCCTTTTCGT
CGTCTTGTTTGATGTTATTTTGAGAGTTTTAAATTGCCGACTATTTCTAC
AGTACCGTACAAACCTCCACGTAGCGCTTAGCTTGATGCCCTGGGTACGG
TGGTATCTCATGTCTCGTCCTCGCGGATATATAGGGCGTTACTGGTTTGT
GAAGTGCTTTTCTTGAACGTGTTTTTTTTGTTGTCGGTTACTCGTTGGAA
TGTACATTTGCTGGATGGGAACTCTGGGCGAGCAGTTCCGGTGGGAGAGC
CGCTGGACAGCTCCATCTTCCAGGTATGCAATGATATGTAGCAGCCAGCC
AGACAAAAAGATTTCGTTGTTGTCGAATGTTGGTGGTTGTTGTATTGATG
CTGTTGTTGTCTAATTTTTGTCAGATGTTTGTCATCACCTTTTTCCAACT
TCGGTGCGTACTCCAGAGTTCTCACAATCGATCAGACTATTTTCTTATCG
TGGATTTTTTTGTCGACATTGGTTTACCCTTTTTGTGGGGTTCAGCAGCG
CATAGCTCGCCGAGCACTTGAACCAGAAGAATTGGATTTCGTGGGAAATT
GGTTCGCAAATGTGTGTTTGTGTAAGGGACATCTTATTCGTCCTCTTGTT
GCAGCAGCCGCCCAGCTGCGCGGTTTCCCATTTCTCCACTTTTTTCCGTT
ACATTTTTTTTGTCAGGGATGGAGAACAATACGCTGAAAATGGTGAATAA
TTTTTTAATCTTTTGGATGTTTTTTTCTTTTTTAACCCTCGGAAGGCTGA
GGCAAAAACCATTATCCGATGCTTCCATACTTGAAGTATTTTACCGAAGT
ATTTGTACATTTCCTTCAACAAAACAGAGTTATTTATTCCTCTGCGGGGT
AGGTGACACCCCGGTTCGGCCGAACCAAGTAGGCAGTGTGGGGGGTTGCA
TTGGGATGTTGGTTCTACGATATAGCGCTCATCTCGTACACGTTGCACAT
CCGATGCATATAACGTGGACTGCCTGTGACGAGCTTTGCTCAGTTTTACG
CCTTTTGTTTTGAGGTGTTCCGCTACCTTGCATTTCGTCTGTGCTTTGTG
TGCCTTGGGTGTCGTTGGGTACGACGTAAGTTTGTACCTACTGTAAGTGC
ATGTCATCCGCTGAACGAACGATGGACAGGTGATCAGCGCGAACTCTTTC
AAGCCGATTGAGCCAGTGAGCTCGTACGATAAGTTCCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4439:8192..12381+

>mRNA_H-paniculata_contig4439.11214.1 ID=mRNA_H-paniculata_contig4439.11214.1|Name=mRNA_H-paniculata_contig4439.11214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig4439:8192..12381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGGACAGAGTGCCCTGCAAGGAAGGGATGGTGGTGGACAGAGT
GCCCTGCAAGGAAGGGACCATTCCTCTGGCGGAGCTGAATTACTTCACCA
AAAACCCTGAGAGGGCGGCGAGGATGGATAACTGGAGCGCTCGGATCAAG
CAGTTCCAGGACGACCTCACCGGGATGCCGGAGGAAGACAAGATGCGCCT
GCCAGACCATTCCTCTGGCGGAGCTGAATTACTTCACCAAAAACCCTGAG
AGGGCGGCGAGGATGGATAACTGGAGCGCTCGGATCAAGCAGTTCCAGGA
CGACCTCACCGGGATGCCGGAGGAAGACAAGATGCGCCTGCCAGTTCCGG
TGGGAGAGCCGCTGGACAGCTCCATCTTCCAGTTCCGGTGGGAGAGCCGC
TGGACAGCTCCATCTTCCAGTTTGTACCTACTGTAAGTGCATGTCATCCG
CTGAACGAACGATGGACAGGTGATCAGCGCGAACTCTTTCAAGCCGATTG
ATTTGTACCTACTGTAAGTGCATGTCATCCGCTGAACGAACGATGGACAG
GTGATCAGCGCGAACTCTTTCAAGCCGATTGA
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