mRNA_H-paniculata_contig4426.11187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4426.11187.1
Unique NamemRNA_H-paniculata_contig4426.11187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4426.11187.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.200e-5
Identity = 21/40 (52.50%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  107 RRCSDHGCSTTPSFGSEGSRKAEYCAQHARAGMVNVTKQQ 226
            R C +HGC+  PS+G +GS+KAE+C++H++ GM NVTK++
Sbjct:   29 RCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKR 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4426.11187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY22_ECTSI1.200e-552.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4426contigH-paniculata_contig4426:1044..3229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2072
Cds size1545
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4426.11187.1prot_H-paniculata_contig4426.11187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4426 1144..2802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930334.5240839-UTR-H-paniculata_contig4426:1043..11431622930334.5240839-UTR-H-paniculata_contig4426:1043..1143Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4426 1044..1143 +
1691481246.3825092-UTR-H-paniculata_contig4426:1043..11431691481246.3825092-UTR-H-paniculata_contig4426:1043..1143Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4426 1044..1143 +
1622930334.5728061-UTR-H-paniculata_contig4426:2802..32291622930334.5728061-UTR-H-paniculata_contig4426:2802..3229Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4426 2803..3229 +
1691481246.4148133-UTR-H-paniculata_contig4426:2802..32291691481246.4148133-UTR-H-paniculata_contig4426:2802..3229Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4426 2803..3229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930334.5407174-CDS-H-paniculata_contig4426:1143..15231622930334.5407174-CDS-H-paniculata_contig4426:1143..1523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4426 1144..1523 +
1691481246.395025-CDS-H-paniculata_contig4426:1143..15231691481246.395025-CDS-H-paniculata_contig4426:1143..1523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4426 1144..1523 +
1622930334.554207-CDS-H-paniculata_contig4426:1637..28021622930334.554207-CDS-H-paniculata_contig4426:1637..2802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4426 1638..2802 +
1691481246.4051816-CDS-H-paniculata_contig4426:1637..28021691481246.4051816-CDS-H-paniculata_contig4426:1637..2802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4426 1638..2802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4426.11187.1

>prot_H-paniculata_contig4426.11187.1 ID=prot_H-paniculata_contig4426.11187.1|Name=mRNA_H-paniculata_contig4426.11187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=515bp
MPRRCSDHGCSTTPSFGSEGSRKAEYCAQHARAGMVNVTKQQCCNEGCSK
QALVGFESNRKAEYCAQHARAGMVDVKSSMCGNEGCSKQPSFSSAGGRKA
EYCAQHATAGMVRVTNRICGNEGCYTRSSFGFESNRKAEYCAQHARAGMV
NVTNRMCGNEGCSRRPSFGFEGSRKAEFCAQHATAGMVNVTKQKCCNKGC
SKQASVGFEGSRKVEYCAQHARAGMVKVKNNKCGNEGCSRRPSFGFEGSR
KAEYCARHSRAGMVDVKSNKCGNEDCSKQPSFGSAGSRKTEYCAQHAEAS
VEDMKSGKCGNEGCSKRKVHVIQGIRNKSCTLYAEMEITRVSDGSKYPKY
STSNRDLIEDGVDSVAHGLGQHVKHHGGIYSGASSLDGSCREVHSDAGWG
GETTARVSGQPASVMTGVVYADSEVAVKLDLRMSSVCVAYGIGKRSEPFA
PASSSRGSCSGDGSSSSQRSKRVRRTAQEASRHLLAEAESVAKEVKNEVK
LELVASAATSCSDQ*
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mRNA from alignment at H-paniculata_contig4426:1044..3229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4426.11187.1 ID=mRNA_H-paniculata_contig4426.11187.1|Name=mRNA_H-paniculata_contig4426.11187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2186bp|location=Sequence derived from alignment at H-paniculata_contig4426:1044..3229+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAACTGGTGACAAACGTTCGATACTGGCGTAATGATTCACTGTGTGG
ACTTGGCAGGAGCTTAATTCGAAGTTTGTGTCACTTTATGCGGCTGGAGG
ATGCCTCGTCGATGCTCTGACCATGGTTGCTCCACAACGCCATCTTTTGG
ATCAGAGGGCAGTAGGAAGGCCGAGTATTGTGCTCAGCACGCCAGGGCCG
GTATGGTAAATGTCACGAAACAACAATGCTGCAACGAGGGCTGCTCGAAA
CAGGCGTTAGTTGGATTCGAGAGCAACAGGAAGGCCGAATATTGCGCTCA
GCACGCCAGGGCGGGTATGGTAGATGTCAAGAGCAGCATGTGCGGCAACG
AGGGCTGCTCGAAACAGCCGTCATTTTCATCAGCAGGCGGCAGAAAGGCC
GAGTATTGTGCTCAGCATGCCACGGCAGGAATGGTACGTGTCACGAACAG
AATATGCGGCAACGAGGGTTGTTATACGAGGTCGTCATTTGGATTCGAGA
GCAACAGGAAGGCCGAATATTGCGCTCAGCACGCCAGGGCGGGCATGGTG
GATGTCACGAACAGAATGTGCGGCAACGAGGGTTGTTATACGAGGTCGTC
ATTTGGATTCGAGAGCAACAGGAAGGCCGAATATTGCGCTCAGCACGCCA
GGGCGGGCATGGTGAATGTCACGAACAGAATGTGCGGCAACGAGGGCTGC
TCTAGGAGGCCGTCATTTGGATTCGAGGGCAGTAGGAAGGCCGAGTTTTG
TGCTCAGCATGCTACGGCGGGCATGGTAAACGTCACGAAACAAAAATGCT
GCAATAAGGGCTGCTCGAAACAGGCGTCAGTTGGATTCGAGGGCAGCAGG
AAAGTCGAGTATTGTGCCCAGCACGCCAGGGCGGGAATGGTAAAAGTAAA
AAACAACAAGTGCGGCAATGAGGGCTGCTCTAGGAGGCCGTCATTTGGAT
TCGAGGGAAGCAGGAAGGCCGAGTATTGTGCTCGGCACTCCAGGGCGGGC
ATGGTAGATGTCAAGAGCAACAAGTGCGGCAACGAGGATTGCTCGAAACA
GCCGTCATTTGGATCAGCGGGCAGCAGAAAGACCGAATATTGTGCCCAGC
ATGCCGAGGCGAGCGTGGAGGATATGAAAAGCGGCAAGTGCGGCAACGAG
GGCTGCTCTAAGCGAAAGGTGCACGTCATCCAAGGTATCAGGAATAAATC
CTGCACCCTGTATGCCGAGATGGAGATAACTCGAGTGAGCGACGGATCAA
AATATCCAAAATATAGTACCTCCAATCGCGACCTGATCGAAGACGGAGTT
GATAGTGTGGCCCATGGTCTTGGACAACATGTCAAGCATCACGGTGGTAT
ATATTCCGGTGCAAGCAGTCTTGATGGTTCTTGCAGGGAAGTACACAGCG
ATGCTGGGTGGGGTGGTGAGACAACGGCGCGTGTGTCCGGACAGCCCGCC
TCCGTCATGACCGGTGTGGTGTATGCTGATTCCGAGGTCGCGGTAAAGCT
AGACCTACGGATGAGTTCTGTGTGTGTTGCTTATGGGATAGGAAAACGCA
GTGAACCCTTTGCTCCTGCTAGCTCGAGCAGGGGTAGCTGTAGTGGTGAT
GGTAGTAGTAGTAGTCAGCGTTCTAAGCGTGTTCGAAGGACAGCCCAAGA
GGCATCAAGACATCTCTTGGCAGAAGCTGAGTCCGTGGCTAAAGAGGTAA
AGAACGAGGTAAAGTTGGAGCTGGTAGCCTCCGCTGCAACATCTTGTTCG
GATCAATAGACTCAGGTTCGTCTTACTCAGTGGAATCGATCTACAAAAAG
AGTGATGTGGGATCTACTCAGTACATAGATTCTTCGGAGTACTAGCTGCG
TTAGCCAGGCGAAGGCGAAGCAAGAAACGCAAGTTTCAAATCTATATCGG
TCTCTCCACGATCGTCTTGCTAGCAAGCGATCTCGGTCTCCGACGGGGCA
AATGGTTGCGGCACTGATGTGATCTCCTAAAAGGTGTACTCGATCGGGGA
AATTCTCTCTTTCAAGGAGATTTTGACTTTTACACCCGAATCCGCCTTTC
AGCAAGTGTTCAAGCAGCGGGCAACACTCAGCGGTCGGTGTACAATGTAC
GGATATTCCAACGAACCGTGCGAGTTTTATTGGTGGCGATAATAATTGTA
GCTGAAGACGTAGCGTTGGGTTGGACGTACGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4426:1044..3229+

>mRNA_H-paniculata_contig4426.11187.1 ID=mRNA_H-paniculata_contig4426.11187.1|Name=mRNA_H-paniculata_contig4426.11187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3090bp|location=Sequence derived from alignment at H-paniculata_contig4426:1044..3229+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCGTCGATGCTCTGACCATGGTTGCTCCACAACGCCATCTTTTGG
ATCAGAGGGCAGTAGGAAGGCCGAGTATTGTGCTCAGCACGCCAGGGCCG
GTATGGTAAATGTCACGAAACAACAATGCTGCAACGAGGGCTGCTCGAAA
CAGGCGTTAGTTGGATTCGAGAGCAACAGGAAGGCCGAATATTGCGCTCA
GCACGCCAGGGCGGGTATGGTAGATGTCAAGAGCAGCATGTGCGGCAACG
AGGGCTGCTCGAAACAGCCGTCATTTTCATCAGCAGGCGGCAGAAAGGCC
GAGTATTGTGCTCAGCATGCCACGGCAGGAATGGTACGTGTCACGAACAG
AATATGCGGCAACGAGGGTTGTTATACGAGATGCCTCGTCGATGCTCTGA
CCATGGTTGCTCCACAACGCCATCTTTTGGATCAGAGGGCAGTAGGAAGG
CCGAGTATTGTGCTCAGCACGCCAGGGCCGGTATGGTAAATGTCACGAAA
CAACAATGCTGCAACGAGGGCTGCTCGAAACAGGCGTTAGTTGGATTCGA
GAGCAACAGGAAGGCCGAATATTGCGCTCAGCACGCCAGGGCGGGTATGG
TAGATGTCAAGAGCAGCATGTGCGGCAACGAGGGCTGCTCGAAACAGCCG
TCATTTTCATCAGCAGGCGGCAGAAAGGCCGAGTATTGTGCTCAGCATGC
CACGGCAGGAATGGTACGTGTCACGAACAGAATATGCGGCAACGAGGGTT
GTTATACGAGGTCGTCATTTGGATTCGAGAGCAACAGGAAGGCCGAATAT
TGCGCTCAGCACGCCAGGGCGGGCATGGTGAATGTCACGAACAGAATGTG
CGGCAACGAGGGCTGCTCTAGGAGGCCGTCATTTGGATTCGAGGGCAGTA
GGAAGGCCGAGTTTTGTGCTCAGCATGCTACGGCGGGCATGGTAAACGTC
ACGAAACAAAAATGCTGCAATAAGGGCTGCTCGAAACAGGCGTCAGTTGG
ATTCGAGGGCAGCAGGAAAGTCGAGTATTGTGCCCAGCACGCCAGGGCGG
GAATGGTAAAAGTAAAAAACAACAAGTGCGGCAATGAGGGCTGCTCTAGG
AGGCCGTCATTTGGATTCGAGGGAAGCAGGAAGGCCGAGTATTGTGCTCG
GCACTCCAGGGCGGGCATGGTAGATGTCAAGAGCAACAAGTGCGGCAACG
AGGATTGCTCGAAACAGCCGTCATTTGGATCAGCGGGCAGCAGAAAGACC
GAATATTGTGCCCAGCATGCCGAGGCGAGCGTGGAGGATATGAAAAGCGG
CAAGTGCGGCAACGAGGGCTGCTCTAAGCGAAAGGTGCACGTCATCCAAG
GTATCAGGAATAAATCCTGCACCCTGTATGCCGAGATGGAGATAACTCGA
GTGAGCGACGGATCAAAATATCCAAAATATAGTACCTCCAATCGCGACCT
GATCGAAGACGGAGTTGATAGTGTGGCCCATGGTCTTGGACAACATGTCA
AGCATCACGGTGGTATATATTCCGGTGCAAGCAGTCTTGATGGTTCTTGC
AGGGAAGTACACAGCGATGCTGGGTGGGGTGGTGAGACAACGGCGCGTGT
GTCCGGACAGCCCGCCTCCGTCATGACCGGTGTGGTGTATGCTGATTCCG
AGGTCGCGGTAAAGCTAGACCTACGGATGAGTTCTGTGTGTGTTGCTTAT
GGGATAGGAAAACGCAGTGAACCCTTTGCTCCTGCTAGCTCGAGCAGGGG
TAGCTGTAGTGGTGATGGTAGTAGTAGTAGTCAGCGTTCTAAGCGTGTTC
GAAGGACAGCCCAAGAGGCATCAAGACATCTCTTGGCAGAAGCTGAGTCC
GTGGCTAAAGAGGTAAAGAACGAGGTAAAGTTGGAGCTGGTAGCCTCCGC
TGCAACATCTTGTTCGGATCAATAGGTCGTCATTTGGATTCGAGAGCAAC
AGGAAGGCCGAATATTGCGCTCAGCACGCCAGGGCGGGCATGGTGAATGT
CACGAACAGAATGTGCGGCAACGAGGGCTGCTCTAGGAGGCCGTCATTTG
GATTCGAGGGCAGTAGGAAGGCCGAGTTTTGTGCTCAGCATGCTACGGCG
GGCATGGTAAACGTCACGAAACAAAAATGCTGCAATAAGGGCTGCTCGAA
ACAGGCGTCAGTTGGATTCGAGGGCAGCAGGAAAGTCGAGTATTGTGCCC
AGCACGCCAGGGCGGGAATGGTAAAAGTAAAAAACAACAAGTGCGGCAAT
GAGGGCTGCTCTAGGAGGCCGTCATTTGGATTCGAGGGAAGCAGGAAGGC
CGAGTATTGTGCTCGGCACTCCAGGGCGGGCATGGTAGATGTCAAGAGCA
ACAAGTGCGGCAACGAGGATTGCTCGAAACAGCCGTCATTTGGATCAGCG
GGCAGCAGAAAGACCGAATATTGTGCCCAGCATGCCGAGGCGAGCGTGGA
GGATATGAAAAGCGGCAAGTGCGGCAACGAGGGCTGCTCTAAGCGAAAGG
TGCACGTCATCCAAGGTATCAGGAATAAATCCTGCACCCTGTATGCCGAG
ATGGAGATAACTCGAGTGAGCGACGGATCAAAATATCCAAAATATAGTAC
CTCCAATCGCGACCTGATCGAAGACGGAGTTGATAGTGTGGCCCATGGTC
TTGGACAACATGTCAAGCATCACGGTGGTATATATTCCGGTGCAAGCAGT
CTTGATGGTTCTTGCAGGGAAGTACACAGCGATGCTGGGTGGGGTGGTGA
GACAACGGCGCGTGTGTCCGGACAGCCCGCCTCCGTCATGACCGGTGTGG
TGTATGCTGATTCCGAGGTCGCGGTAAAGCTAGACCTACGGATGAGTTCT
GTGTGTGTTGCTTATGGGATAGGAAAACGCAGTGAACCCTTTGCTCCTGC
TAGCTCGAGCAGGGGTAGCTGTAGTGGTGATGGTAGTAGTAGTAGTCAGC
GTTCTAAGCGTGTTCGAAGGACAGCCCAAGAGGCATCAAGACATCTCTTG
GCAGAAGCTGAGTCCGTGGCTAAAGAGGTAAAGAACGAGGTAAAGTTGGA
GCTGGTAGCCTCCGCTGCAACATCTTGTTCGGATCAATAG
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