mRNA_H-paniculata_contig4422.11182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438D5Z5_VITVI (Copia protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D5Z5_VITVI) HSP 1 Score: 52.0 bits (123), Expect = 1.450e-6 Identity = 20/61 (32.79%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
RS+ I+CDN A+ +A GSRSKH+ I+++ +R+ + +++++ + S++ ++D TK
Sbjct: 39 RSLSIYCDNSAAIFMAKNNKSGSRSKHIDIKYLAIRECVKEKKMVIEHISTELMIADPLTK 99
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438FG07_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FG07_VITVI) HSP 1 Score: 51.6 bits (122), Expect = 1.210e-5 Identity = 24/80 (30.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 28 FHLSGILGALGWKNFRSVHI----FCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
F L+G GA+ W++ +I +CDN A+ +A GSRSKH+ I+++ +R+ + +++++ + S++ ++D TK
Sbjct: 494 FILAG--GAISWRSSYGFNIPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIREHVKEKKVVIEHISTELMIADPLTK 571
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438J7E3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J7E3_VITVI) HSP 1 Score: 51.6 bits (122), Expect = 1.260e-5 Identity = 20/61 (32.79%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
R + I+CDN A+ +A GSRSKH+ I+++ +R+ + +++++ + S+K ++D TK
Sbjct: 1442 RPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTKLMITDPLTK 1502
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438EJF0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EJF0_VITVI) HSP 1 Score: 51.2 bits (121), Expect = 1.420e-5 Identity = 23/79 (29.11%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 28 FHLSGILGALGWKNF-------RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSD 243
F L+G GA+ W++ +++ I+CDN A+ LA GSRSKH+ I+++ +R+ + ++ + S++ ++D
Sbjct: 174 FSLAG--GAISWRSLQVVDLISKTLRIYCDNSAAVFLAKNNKSGSRSKHIDIKYLSIREHVKSNKVAIEHISTRLMIAD 250
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: UPI00192E893C (secreted RxLR effector protein 161-like n=3 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192E893C) HSP 1 Score: 50.8 bits (120), Expect = 1.600e-5 Identity = 20/61 (32.79%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
R + IFCDN A+ +A GSRSKH+ I+++ +R+ + +++++ + S+ ++D TK
Sbjct: 148 RPLRIFCDNSAAVFMAKNHKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTGLMIADSLTK 208
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438I0F6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I0F6_VITVI) HSP 1 Score: 51.2 bits (121), Expect = 1.660e-5 Identity = 22/83 (26.51%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 49 GALGWKNFRS--------------VHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
GA+ W++ +S + I+CDN A+ +A GSRSKH+ I+++ +R+ + +++++ + S++ ++D TK
Sbjct: 490 GAISWRSLKSFISGLRVMDSISRPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIRECVKEKKVVIEHISTELMIADPLTK 572
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438J094_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J094_VITVI) HSP 1 Score: 49.3 bits (116), Expect = 1.930e-5 Identity = 18/59 (30.51%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 79 VHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
+ I+CDN A+ +A GSRSKH+ I+++ +R+ + +++++ + S++ ++D TK
Sbjct: 51 ISIYCDNSTAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 109
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438CYW8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CYW8_VITVI) HSP 1 Score: 50.8 bits (120), Expect = 2.250e-5 Identity = 19/61 (31.15%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
+ + I+CDN A+ +A GSRSKH+ I+++ +R+ + ++++I + S++ ++D+ TK
Sbjct: 462 KPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVIIEHISTELMITDLLTK 522
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A2N9I6P9_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I6P9_FAGSY) HSP 1 Score: 50.8 bits (120), Expect = 2.280e-5 Identity = 20/61 (32.79%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
R + ++CDN A+ +A GSRSKH+ I+++ +R+ I +++++ + S+K ++D TK
Sbjct: 584 RPLRMYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERIKEKKVVIEHVSTKLMIADPLTK 644
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: B5U9F7_SOYBN (Gag-protease-integrase-RT-RNaseH polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=B5U9F7_SOYBN) HSP 1 Score: 50.8 bits (120), Expect = 2.340e-5 Identity = 20/61 (32.79%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
R + IFCDN A+ +A GSRSKH+ I+++ +R+ + ++++ + S++ ++D TK
Sbjct: 1241 RPLRIFCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKDKKVVIEHISTELMIADPLTK 1301 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4422.11182.1 >prot_H-paniculata_contig4422.11182.1 ID=prot_H-paniculata_contig4422.11182.1|Name=mRNA_H-paniculata_contig4422.11182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp MSTCAKQGFHLSGILGALGWKNFRSVHIFCDNKEALLLAGQCNYGSRSKHback to top mRNA from alignment at H-paniculata_contig4422:2..256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4422.11182.1 ID=mRNA_H-paniculata_contig4422.11182.1|Name=mRNA_H-paniculata_contig4422.11182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig4422:2..256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4422:2..256+ >mRNA_H-paniculata_contig4422.11182.1 ID=mRNA_H-paniculata_contig4422.11182.1|Name=mRNA_H-paniculata_contig4422.11182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig4422:2..256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |