mRNA_H-paniculata_contig4422.11182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4422.11182.1
Unique NamemRNA_H-paniculata_contig4422.11182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438D5Z5_VITVI (Copia protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D5Z5_VITVI)

HSP 1 Score: 52.0 bits (123), Expect = 1.450e-6
Identity = 20/61 (32.79%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            RS+ I+CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S++  ++D  TK
Sbjct:   39 RSLSIYCDNSAAIFMAKNNKSGSRSKHIDIKYLAIRECVKEKKMVIEHISTELMIADPLTK 99          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438FG07_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FG07_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.210e-5
Identity = 24/80 (30.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   28 FHLSGILGALGWKNFRSVHI----FCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            F L+G  GA+ W++    +I    +CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S++  ++D  TK
Sbjct:  494 FILAG--GAISWRSSYGFNIPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIREHVKEKKVVIEHISTELMIADPLTK 571          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438J7E3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J7E3_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 1.260e-5
Identity = 20/61 (32.79%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            R + I+CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S+K  ++D  TK
Sbjct: 1442 RPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTKLMITDPLTK 1502          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438EJF0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EJF0_VITVI)

HSP 1 Score: 51.2 bits (121), Expect = 1.420e-5
Identity = 23/79 (29.11%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   28 FHLSGILGALGWKNF-------RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSD 243
            F L+G  GA+ W++        +++ I+CDN  A+ LA     GSRSKH+ I+++ +R+ +   ++  +  S++  ++D
Sbjct:  174 FSLAG--GAISWRSLQVVDLISKTLRIYCDNSAAVFLAKNNKSGSRSKHIDIKYLSIREHVKSNKVAIEHISTRLMIAD 250          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: UPI00192E893C (secreted RxLR effector protein 161-like n=3 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192E893C)

HSP 1 Score: 50.8 bits (120), Expect = 1.600e-5
Identity = 20/61 (32.79%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            R + IFCDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S+   ++D  TK
Sbjct:  148 RPLRIFCDNSAAVFMAKNHKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTGLMIADSLTK 208          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438I0F6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I0F6_VITVI)

HSP 1 Score: 51.2 bits (121), Expect = 1.660e-5
Identity = 22/83 (26.51%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   49 GALGWKNFRS--------------VHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            GA+ W++ +S              + I+CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S++  ++D  TK
Sbjct:  490 GAISWRSLKSFISGLRVMDSISRPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIRECVKEKKVVIEHISTELMIADPLTK 572          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438J094_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J094_VITVI)

HSP 1 Score: 49.3 bits (116), Expect = 1.930e-5
Identity = 18/59 (30.51%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   79 VHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            + I+CDN  A+ +A     GSRSKH+ I+++ +R+ + +++++ +  S++  ++D  TK
Sbjct:   51 ISIYCDNSTAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 109          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A438CYW8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CYW8_VITVI)

HSP 1 Score: 50.8 bits (120), Expect = 2.250e-5
Identity = 19/61 (31.15%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            + + I+CDN  A+ +A     GSRSKH+ I+++ +R+ + ++++I +  S++  ++D+ TK
Sbjct:  462 KPLSIYCDNSVAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVIIEHISTELMITDLLTK 522          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: A0A2N9I6P9_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I6P9_FAGSY)

HSP 1 Score: 50.8 bits (120), Expect = 2.280e-5
Identity = 20/61 (32.79%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            R + ++CDN  A+ +A     GSRSKH+ I+++ +R+ I +++++ +  S+K  ++D  TK
Sbjct:  584 RPLRMYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERIKEKKVVIEHVSTKLMIADPLTK 644          
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Match: B5U9F7_SOYBN (Gag-protease-integrase-RT-RNaseH polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=B5U9F7_SOYBN)

HSP 1 Score: 50.8 bits (120), Expect = 2.340e-5
Identity = 20/61 (32.79%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   73 RSVHIFCDNKEALLLAGQCNYGSRSKHLTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK 255
            R + IFCDN  A+ +A     GSRSKH+ I+++ +R+ +  ++++ +  S++  ++D  TK
Sbjct: 1241 RPLRIFCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKDKKVVIEHISTELMIADPLTK 1301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4422.11182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438D5Z5_VITVI1.450e-632.79Copia protein n=1 Tax=Vitis vinifera TaxID=29760 R... [more]
A0A438FG07_VITVI1.210e-530.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438J7E3_VITVI1.260e-532.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EJF0_VITVI1.420e-529.11Retrovirus-related Pol polyprotein from transposon... [more]
UPI00192E893C1.600e-532.79secreted RxLR effector protein 161-like n=3 Tax=Eu... [more]
A0A438I0F6_VITVI1.660e-526.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438J094_VITVI1.930e-530.51Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438CYW8_VITVI2.250e-531.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9I6P9_FAGSY2.280e-532.79CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
B5U9F7_SOYBN2.340e-532.79Gag-protease-integrase-RT-RNaseH polyprotein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4422contigH-paniculata_contig4422:2..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size252
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930333.9354713-UTR-H-paniculata_contig4422:1..41622930333.9354713-UTR-H-paniculata_contig4422:1..4Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4422 2..4 +
1691481246.162175-UTR-H-paniculata_contig4422:1..41691481246.162175-UTR-H-paniculata_contig4422:1..4Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4422 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930333.9521976-CDS-H-paniculata_contig4422:4..2561622930333.9521976-CDS-H-paniculata_contig4422:4..256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4422 5..256 +
1691481246.1746979-CDS-H-paniculata_contig4422:4..2561691481246.1746979-CDS-H-paniculata_contig4422:4..256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4422 5..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4422.11182.1prot_H-paniculata_contig4422.11182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4422 5..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4422.11182.1

>prot_H-paniculata_contig4422.11182.1 ID=prot_H-paniculata_contig4422.11182.1|Name=mRNA_H-paniculata_contig4422.11182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MSTCAKQGFHLSGILGALGWKNFRSVHIFCDNKEALLLAGQCNYGSRSKH
LTIRFVGLRDWINQRQIIFDRFSSKKQLSDISTK
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mRNA from alignment at H-paniculata_contig4422:2..256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4422.11182.1 ID=mRNA_H-paniculata_contig4422.11182.1|Name=mRNA_H-paniculata_contig4422.11182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig4422:2..256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATGAGCACCTGCGCTAAACAAGGATTTCACCTGTCCGGCATCCTCGG AGCGCTTGGATGGAAGAACTTCCGCAGCGTCCACATCTTCTGTGACAACA AGGAAGCGCTACTTCTTGCAGGCCAATGCAACTATGGAAGCAGGTCCAAA CATCTGACCATTCGTTTTGTTGGGCTCCGCGATTGGATTAACCAGCGGCA GATAATCTTCGACCGTTTCTCCTCCAAGAAACAGCTCAGCGACATCTCAA CAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4422:2..256+

>mRNA_H-paniculata_contig4422.11182.1 ID=mRNA_H-paniculata_contig4422.11182.1|Name=mRNA_H-paniculata_contig4422.11182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig4422:2..256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCACCTGCGCTAAACAAGGATTTCACCTGTCCGGCATCCTCGGAGC
GCTTGGATGGAAGAACTTCCGCAGCGTCCACATCTTCTGTGACAACAAGG
AAGCGCTACTTCTTGCAGGCCAATGCAACTATGGAAGCAGGTCCAAACAT
CTGACCATTCGTTTTGTTGGGCTCCGCGATTGGATTAACCAGCGGCAGAT
AATCTTCGACCGTTTCTCCTCCAAGAAACAGCTCAGCGACATCTCAACAA
AGATGAGCACCTGCGCTAAACAAGGATTTCACCTGTCCGGCATCCTCGGA
GCGCTTGGATGGAAGAACTTCCGCAGCGTCCACATCTTCTGTGACAACAA
GGAAGCGCTACTTCTTGCAGGCCAATGCAACTATGGAAGCAGGTCCAAAC
ATCTGACCATTCGTTTTGTTGGGCTCCGCGATTGGATTAACCAGCGGCAG
ATAATCTTCGACCGTTTCTCCTCCAAGAAACAGCTCAGCGACATCTCAAC
AAAG
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