mRNA_H-paniculata_contig43954.11138.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43954.11138.1
Unique NamemRNA_H-paniculata_contig43954.11138.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.710e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 LLNASVVKAIGLDEIATGSTTSSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK 210
            LL ASV KAI +DE+A G+  SSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK
Sbjct:  469 LLEASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK 538
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BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Match: A0A7S2V6Z6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.020e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   79 DAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRKV 213
            D F+VAQRCAKRA+ATGH G+ SAV+NHV N L  DLL+ L  K+
Sbjct:    2 DVFYVAQRCAKRAMATGHGGSGSAVINHVNNCLASDLLQPLFTKL 46
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BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.780e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   61 TSSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRKVR 216
            TSS  +D+F+V +RCA+RAL TGHAG ASA++N++   L  +L+  L  KVR
Sbjct:  533 TSSAVDDSFYVLRRCARRALVTGHAGTASAIINYINGALSDELMSVLSAKVR 584
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BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Match: A0A7S2WIB6_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIB6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 6.910e-5
Identity = 34/81 (41.98%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:    1 LLNASVVKAIGLDEIAT-----------GSTTSSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK 210
            LL   + KAI +D  A             + TSS  ED F VA     R+LATG+   ASAV+NHV N+L  DL +AL  K
Sbjct:  385 LLGVGIRKAIDMDNTAQVAADFSRSSNGDAPTSSAVEDPFLVAGNALNRSLATGNCTVASAVINHVNNSLAEDLFDALKTK 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE1.710e-2787.14Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A7S2V6Z6_9STRA1.020e-964.44Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9D1B9_9STRA9.780e-851.92Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A7S2WIB6_9STRA6.910e-541.98Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43954contigH-paniculata_contig43954:428..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3e-24
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930327.8449924-CDS-H-paniculata_contig43954:427..6701622930327.8449924-CDS-H-paniculata_contig43954:427..670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43954 428..670 -
1691481243.439231-CDS-H-paniculata_contig43954:427..6701691481243.439231-CDS-H-paniculata_contig43954:427..670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43954 428..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43954.11138.1prot_H-paniculata_contig43954.11138.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43954 428..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43954.11138.1

>prot_H-paniculata_contig43954.11138.1 ID=prot_H-paniculata_contig43954.11138.1|Name=mRNA_H-paniculata_contig43954.11138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
LLNASVVKAIGLDEIATGSTTSSCAEDAFFVAQRCAKRALATGHAGAASA
VVNHVGNTLGVDLLEALVRKVRYGAVQAQL*
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mRNA from alignment at H-paniculata_contig43954:428..670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43954.11138.1 ID=mRNA_H-paniculata_contig43954.11138.1|Name=mRNA_H-paniculata_contig43954.11138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig43954:428..670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTGAACGCTTCAGTGGTAAAGGCGATCGGCCTGGACGAGATAGCGAC
GGGCTCTACCACTTCTTCTTGCGCCGAGGACGCGTTCTTCGTTGCGCAGC
GGTGTGCCAAGAGAGCGCTGGCGACTGGACATGCCGGCGCCGCGTCGGCC
GTGGTCAATCACGTGGGAAACACTCTAGGCGTGGACCTGCTAGAGGCGCT
CGTTAGGAAGGTGCGCTACGGTGCAGTCCAGGCTCAGCTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig43954:428..670-

>mRNA_H-paniculata_contig43954.11138.1 ID=mRNA_H-paniculata_contig43954.11138.1|Name=mRNA_H-paniculata_contig43954.11138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig43954:428..670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTGAACGCTTCAGTGGTAAAGGCGATCGGCCTGGACGAGATAGCGAC
GGGCTCTACCACTTCTTCTTGCGCCGAGGACGCGTTCTTCGTTGCGCAGC
GGTGTGCCAAGAGAGCGCTGGCGACTGGACATGCCGGCGCCGCGTCGGCC
GTGGTCAATCACGTGGGAAACACTCTAGGCGTGGACCTGCTAGAGGCGCT
CGTTAGGAAGGTGCGCTACGGTGCAGTCCAGGCTCAGCTCTAATTGTTGA
ACGCTTCAGTGGTAAAGGCGATCGGCCTGGACGAGATAGCGACGGGCTCT
ACCACTTCTTCTTGCGCCGAGGACGCGTTCTTCGTTGCGCAGCGGTGTGC
CAAGAGAGCGCTGGCGACTGGACATGCCGGCGCCGCGTCGGCCGTGGTCA
ATCACGTGGGAAACACTCTAGGCGTGGACCTGCTAGAGGCGCTCGTTAGG
AAGGTGCGCTACGGTGCAGTCCAGGCTCAGCTCTAA
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