prot_H-paniculata_contig43954.11138.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig43954.11138.1
Unique Nameprot_H-paniculata_contig43954.11138.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length81
Homology
BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.710e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0
Query:    1 LLNASVVKAIGLDEIATGSTTSSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK 70
            LL ASV KAI +DE+A G+  SSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK
Sbjct:  469 LLEASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK 538          
BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Match: A0A7S2V6Z6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.020e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0
Query:   27 DAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRKV 71
            D F+VAQRCAKRA+ATGH G+ SAV+NHV N L  DLL+ L  K+
Sbjct:    2 DVFYVAQRCAKRAMATGHGGSGSAVINHVNNCLASDLLQPLFTKL 46          
BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.780e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
Query:   21 TSSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRKVR 72
            TSS  +D+F+V +RCA+RAL TGHAG ASA++N++   L  +L+  L  KVR
Sbjct:  533 TSSAVDDSFYVLRRCARRALVTGHAGTASAIINYINGALSDELMSVLSAKVR 584          
BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Match: A0A7S2WIB6_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIB6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 6.910e-5
Identity = 34/81 (41.98%), Postives = 42/81 (51.85%), Query Frame = 0
Query:    1 LLNASVVKAIGLDEIAT-----------GSTTSSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK 70
            LL   + KAI +D  A             + TSS  ED F VA     R+LATG+   ASAV+NHV N+L  DL +AL  K
Sbjct:  385 LLGVGIRKAIDMDNTAQVAADFSRSSNGDAPTSSAVEDPFLVAGNALNRSLATGNCTVASAVINHVNNSLAEDLFDALKTK 465          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43954.11138.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE1.710e-2787.14Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A7S2V6Z6_9STRA1.020e-964.44Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9D1B9_9STRA9.780e-851.92Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A7S2WIB6_9STRA6.910e-541.98Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013167Conserved oligomeric Golgi complex, subunit 4PFAMPF08318COG4coord: 2..70
e-value: 9.4E-13
score: 47.9
NoneNo IPR availablePANTHERPTHR24016FAMILY NOT NAMEDcoord: 2..73
NoneNo IPR availablePANTHERPTHR24016:SF0CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4coord: 2..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43954contigH-paniculata_contig43954:428..670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43954.11138.1mRNA_H-paniculata_contig43954.11138.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig43954 428..670 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig43954.11138.1 ID=prot_H-paniculata_contig43954.11138.1|Name=mRNA_H-paniculata_contig43954.11138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
LLNASVVKAIGLDEIATGSTTSSCAEDAFFVAQRCAKRALATGHAGAASA
VVNHVGNTLGVDLLEALVRKVRYGAVQAQL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013167COG_su4