mRNA_H-paniculata_contig11734.1112.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11734.1112.1
Unique NamemRNA_H-paniculata_contig11734.1112.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11734.1112.1 vs. uniprot
Match: A0A6H5JVQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.260e-12
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 1 
Query: 1309 AETAADGRDGKAG--------AAPRLRTFQEKLGQGEKKWWPWAYEVLVVQWTQVLATVDGRVQ 1476
            A  AADG DG A          + RLRTF+EKL QGEKKWWPW YEVLVVQWT+VLAT  G ++
Sbjct:   21 ATAAADGADGGAAEGSKSSGSGSVRLRTFEEKLNQGEKKWWPWLYEVLVVQWTEVLATARGGME 84
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BLAST of mRNA_H-paniculata_contig11734.1112.1 vs. uniprot
Match: D8LBX9_ECTSI (Similar to dedicator of cytokinesis n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.090e-10
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1 
Query: 1321 ADGRDGKAGAAPRLRTFQEKLGQGEKKWWPWAYEVLVVQWTQVLATVDGRVQ 1476
            A+G       + RLRTF+EKL QGEKKWWPW YEVLVVQWT+VLAT  G  +
Sbjct:  973 AEGTRSSGSGSVRLRTFEEKLNQGEKKWWPWLYEVLVVQWTEVLATARGGTE 1024
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11734.1112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVQ3_9PHAE4.260e-1260.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBX9_ECTSI1.090e-1063.46Similar to dedicator of cytokinesis n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11734contigH-paniculata_contig11734:4100..7497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.1e-11
Seed eggNOG ortholog2880.D8LBX9
KEGG koko:K21853
Hectar predicted targeting categoryother localisation
EggNOG free text desc.memory T cell proliferation
EggNOG OGsKOG1997@1,KOG1997@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size1497
Cds size1494
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11734.1112.1prot_H-paniculata_contig11734.1112.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11734 4100..7496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.6425762-CDS-H-paniculata_contig11734:4099..53161622928882.6425762-CDS-H-paniculata_contig11734:4099..5316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11734 4100..5316 +
1691480655.5720649-CDS-H-paniculata_contig11734:4099..53161691480655.5720649-CDS-H-paniculata_contig11734:4099..5316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11734 4100..5316 +
1622928882.6567302-CDS-H-paniculata_contig11734:6587..67701622928882.6567302-CDS-H-paniculata_contig11734:6587..6770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11734 6588..6770 +
1691480655.5863533-CDS-H-paniculata_contig11734:6587..67701691480655.5863533-CDS-H-paniculata_contig11734:6587..6770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11734 6588..6770 +
1622928882.6796029-CDS-H-paniculata_contig11734:7402..74961622928882.6796029-CDS-H-paniculata_contig11734:7402..7496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11734 7403..7496 +
1691480655.5951788-CDS-H-paniculata_contig11734:7402..74961691480655.5951788-CDS-H-paniculata_contig11734:7402..7496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11734 7403..7496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11734.1112.1

>prot_H-paniculata_contig11734.1112.1 ID=prot_H-paniculata_contig11734.1112.1|Name=mRNA_H-paniculata_contig11734.1112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=498bp
GAGVGGSSASVAILPPPAVPRLDFTNPFFFANPGPGVVTSASSTAAAHVH
SASAPSCLSSGSFTPSRCDTAAASANADGADGDVDDDVVAAVVTSLATFF
SGTTAIRVPMPTSPIMTPSHSAPKTTMATSPIKTTSATSSSSATTAVVTP
TTFSSSTTAAPNVATAASVGAVGAAGVDNRDTNPFGQHEYQQRPQQPPPR
RHRTNNINNTHNINNHYHAPTTANPIKMGSSLSSPSKPLPATPPPTPTTS
CSPPAPSTTTTKLTSSTTTGPATATPLILLNVGKNGRKQNLNNAEIPTHR
PTSKPHHAAAAAPSSSSSSTGNAPGGTGASQEDPYSLRAQRMRSPSKLLG
TSITRSVVGSSARGSSTSPVRGRGTGVVEIRSLEESYGRMGMGAGGSRGR
GAMGSSSRTMGAEAGSNHVMPPPPPGERRMHSSSSAAETAADGRDGKAGA
APRLRTFQEKLGQGEKKWWPWAYEVLVVQWTQVLATVDGRVQGGDGVG
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mRNA from alignment at H-paniculata_contig11734:4100..7497+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11734.1112.1 ID=mRNA_H-paniculata_contig11734.1112.1|Name=mRNA_H-paniculata_contig11734.1112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3398bp|location=Sequence derived from alignment at H-paniculata_contig11734:4100..7497+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTGGTGTTGGCGGTTCGTCGGCTTCTGTGGCTATCCTGCCCCCTCC
GGCCGTGCCCCGGCTTGACTTTACCAATCCGTTTTTCTTTGCGAATCCGG
GCCCTGGCGTGGTGACGTCGGCGTCTTCGACGGCGGCGGCTCATGTGCAT
TCTGCGTCTGCGCCATCTTGTTTGTCTTCCGGATCTTTTACGCCCTCTCG
CTGTGATACTGCTGCTGCTTCTGCTAATGCTGATGGTGCTGATGGTGATG
TTGATGATGACGTCGTGGCGGCGGTGGTGACGTCGTTGGCAACTTTTTTT
TCTGGGACAACTGCCATCCGGGTGCCCATGCCCACGTCGCCGATCATGAC
CCCTTCACACTCCGCACCTAAAACAACCATGGCTACGTCGCCCATCAAAA
CGACCTCCGCGACGTCTTCCTCCTCGGCGACAACGGCGGTGGTCACGCCT
ACGACGTTCTCGTCGTCGACAACTGCTGCTCCGAACGTTGCCACTGCGGC
TTCTGTTGGTGCTGTTGGTGCTGCTGGTGTCGACAACCGCGACACAAATC
CCTTTGGACAACATGAATACCAACAACGACCACAACAACCACCGCCACGA
CGACATCGCACAAACAACATCAATAACACCCACAACATCAACAATCACTA
CCACGCTCCAACTACCGCCAACCCCATAAAAATGGGTTCATCATTGTCAT
CACCATCGAAACCGCTGCCGGCAACACCACCGCCAACTCCAACAACGTCC
TGTTCCCCGCCGGCACCTTCAACAACAACAACCAAATTGACTTCATCAAC
GACCACTGGACCGGCAACCGCCACTCCACTGATCCTCTTGAATGTCGGCA
AAAACGGACGAAAACAAAACTTGAACAACGCCGAAATCCCCACCCACCGC
CCCACCTCCAAACCCCACCACGCCGCCGCTGCCGCCCCCAGCAGCAGCAG
CAGCAGCACCGGAAACGCTCCCGGTGGCACAGGGGCTTCGCAGGAAGATC
CATACTCCCTGCGGGCCCAACGCATGCGCTCACCGTCGAAGCTCCTGGGC
ACGAGCATCACTCGATCAGTGGTTGGGTCTTCGGCCAGGGGGTCGTCCAC
GTCTCCCGTCCGCGGCAGGGGAACGGGGGTTGTTGAGATTCGGAGTCTAG
AGGAGAGCTACGGCAGGATGGGCATGGGCGCAGGAGGAAGCAGGGGGAGA
GGGGCTATGGGAAGCAGGTGAGAGTGTGGGCCTTGCAGGGTGGTGAAATG
TCCCCCCCCCGAGAAAAGAACAAATATATATATATATATATATATGGGTC
AGCTGATTTCGTTTTTATTTTTAACCTTTCATGCACTGTAACACCATTTT
GAGATCGCACCTCCCGATGTTATTTTTTAATGCTGCTTTTGTCGAGAAGC
AAGAGCCTGAAACACCAGTTATATCGAAGATCTCGACGAGATCTTTTCCA
CGATACCGCCATCGATGTCATCAGCAAGCATTGTCGTTGTCGAGAAAATC
GGTTAAAAAAATAATAACAATAGCAGAGGGGTGCGATATCAAAGTGTGTT
GCAGTAATAATAGTATGTTATATAGTAGTTGCATAGCACAAAGGTGTGGA
TTGCTGGCGTTATTTGTGTTGCCCATAATAGCGTCTAGATAGGCTCATAG
GGATTTTTTGAAGCCCACTCGGTAGAAGGGAAGTTGTACTGTTATAAAAA
TCAGAATAGTTGACACGAATATATATCTACCAGGATTTAAAAAAATAAAT
CCACCCGCCTCTTCGCAAGTTTTCATGGTCTAAAGTAATTTTGGTGTTTA
TGCGAGGTTATGCATGCCTGTTTCTAGTCAGCGATATTGGAGCAATTGAT
GAAAATGCAGGGGGGCGGGCGGATTAGTTGTTACTGAGTTGTATATTTAA
GGAAGCGCGTGCAACAGCGTAAGGCGAATGAGTCGTTTAGATTCCCCTTG
TCATGTTGACGCCACGTGGCCAGCTTGCATTTTTTTTGGACCCTCGGGGG
GCTCGTACCTCGAAAAGCTCCTCTCTGGCGTCTGTATTTTGGCGATTGTT
TTCGCGCAGAAGAGCGTTTCTGCTGGAAATAGCAATAGAAGCTAGTGAAT
ATACGAGGGAGTGACCTCTCGTCCTGTCTGAGCAGAAATAACATGGTTTG
ATTTGCGCTTATATTGTGCTCGAAGGGGTTGAGCTGCATGTGTTCATAAG
CGTCAGTAAAAGAAATCATCACTAAACCAAGCATGACGAGTCAGGGAGGA
GGCTATTGGTGTTTTTTTCAATGTTCAGTTAGTTGAGCGGCTGTCAATGG
TGATATATTTTACTTGCTTTTCGGCTGTTTTTATGTATAATGTTTCACGG
CAGTCCGTCCACGTCTGCTCGTCTATATCTCAACCTGTCCTCTCTTGTCT
GCCGTATTATCGATCTGTCTGCCTCTCTGTCTGTCTCTTGTCTGTTTGTT
GGACCGTTCGCTTGAACTCGTTTTTTTTTTTTTTTCAGCTCTCGGACGAT
GGGCGCCGAGGCCGGCTCCAACCATGTTATGCCTCCGCCACCGCCAGGAG
AGAGGCGAATGCATAGTTCTTCTTCCGCCGCCGAGACTGCCGCCGATGGG
CGTGACGGTAAGGCTGGTGCAGCGCCGCGCCTCAGGACATTTCAGGAGAA
GTTAGGACAGGGAGAAAAGAAGTGAGTCTTGAATAGATGAGAAGCAAGCA
AGATGGTTTGTTGTCTGGTTGTTGGAAACCTTTTTAGCGCCGCCGCCGCC
GCCCTCGTCCCCCCTTCCCACGGGATGTCTTGTAGGATGAGTACTCGGGA
GAGCAGGGGAACCCACGCTGGGTTCTATTTTGACTACAGTGCGTACGGTG
TGATGGGAATTGAGAGCTCTGTAGTCTGTCGTTGTTCAGATGAGCACAGA
CAGAGGGTACAGGCAAGGAAGAAAGACAGGATCAAGAGTTGGCATGGTTT
TTCTTGCGCATCATGTAACTGCAGTACTCGGTGAAGCCTTTTAATAGCAC
TTGAGCTCATTTAGCCCTCCTCGTCAGAGTCCTTGGGGTGCGTGCTGTAG
AATGATCCTAAGTAGTAGCATTTGTAGTTCATATTGCCCCTCCTCCCCCT
CCCCCCCCCCTGGTAACTTTTTTTTATATATACTTAGTATTTTATCATAC
TGTTGCTGTTTCAAATCGTATTGCCCTGGCAACAGAGGCGTTCGTTTCGT
CCTGTTTGTTGTTTTGTTTTATTGCTTGCCGCTCGTCACCCCTCCCGGAT
CGTTGATTCTCTATTTCCTGCACTGCAATACTATACGAAAACGCCTGAAC
CAGGTGGTGGCCCTGGGCGTACGAAGTGCTGGTGGTTCAGTGGACTCAAG
TGTTGGCGACGGTTGACGGGAGGGTCCAGGGTGGGGATGGTGTTGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig11734:4100..7497+

>mRNA_H-paniculata_contig11734.1112.1 ID=mRNA_H-paniculata_contig11734.1112.1|Name=mRNA_H-paniculata_contig11734.1112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2988bp|location=Sequence derived from alignment at H-paniculata_contig11734:4100..7497+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTGGTGTTGGCGGTTCGTCGGCTTCTGTGGCTATCCTGCCCCCTCC
GGCCGTGCCCCGGCTTGACTTTACCAATCCGTTTTTCTTTGCGAATCCGG
GCCCTGGCGTGGTGACGTCGGCGTCTTCGACGGCGGCGGCTCATGTGCAT
TCTGCGTCTGCGCCATCTTGTTTGTCTTCCGGATCTTTTACGCCCTCTCG
CTGTGATACTGCTGCTGCTTCTGCTAATGCTGATGGTGCTGATGGTGATG
TTGATGATGACGTCGTGGCGGCGGTGGTGACGTCGTTGGCAACTTTTTTT
TCTGGGACAACTGCCATCCGGGTGCCCATGCCCACGTCGCCGATCATGAC
CCCTTCACACTCCGCACCTAAAACAACCATGGCTACGTCGCCCATCAAAA
CGACCTCCGCGACGTCTTCCTCCTCGGCGACAACGGCGGTGGTCACGCCT
ACGACGTTCTCGTCGTCGACAACTGCTGCTCCGAACGTTGCCACTGCGGC
TTCTGTTGGTGCTGTTGGTGCTGCTGGTGTCGACAACCGCGACACAAATC
CCTTTGGACAACATGAATACCAACAACGACCACAACAACCACCGCCACGA
CGACATCGCACAAACAACATCAATAACACCCACAACATCAACAATCACTA
CCACGCTCCAACTACCGCCAACCCCATAAAAATGGGTTCATCATTGTCAT
CACCATCGAAACCGCTGCCGGCAACACCACCGCCAACTCCAACAACGTCC
TGTTCCCCGCCGGCACCTTCAACAACAACAACCAAATTGACTTCATCAAC
GACCACTGGACCGGCAACCGCCACTCCACTGATCCTCTTGAATGTCGGCA
AAAACGGACGAAAACAAAACTTGAACAACGCCGAAATCCCCACCCACCGC
CCCACCTCCAAACCCCACCACGCCGCCGCTGCCGCCCCCAGCAGCAGCAG
CAGCAGCACCGGAAACGCTCCCGGTGGCACAGGGGCTTCGCAGGAAGATC
CATACTCCCTGCGGGCCCAACGCATGCGCTCACCGTCGAAGCTCCTGGGC
ACGAGCATCACTCGATCAGTGGTTGGGTCTTCGGCCAGGGGGTCGTCCAC
GTCTCCCGTCCGCGGCAGGGGAACGGGGGTTGTTGAGATTCGGAGTCTAG
AGGAGAGCTACGGCAGGATGGGCATGGGCGCAGGAGGAAGCAGGGGGAGA
GGGGCTATGGGAAGCAGGGTGCTGGTGTTGGCGGTTCGTCGGCTTCTGTG
GCTATCCTGCCCCCTCCGGCCGTGCCCCGGCTTGACTTTACCAATCCGTT
TTTCTTTGCGAATCCGGGCCCTGGCGTGGTGACGTCGGCGTCTTCGACGG
CGGCGGCTCATGTGCATTCTGCGTCTGCGCCATCTTGTTTGTCTTCCGGA
TCTTTTACGCCCTCTCGCTGTGATACTGCTGCTGCTTCTGCTAATGCTGA
TGGTGCTGATGGTGATGTTGATGATGACGTCGTGGCGGCGGTGGTGACGT
CGTTGGCAACTTTTTTTTCTGGGACAACTGCCATCCGGGTGCCCATGCCC
ACGTCGCCGATCATGACCCCTTCACACTCCGCACCTAAAACAACCATGGC
TACGTCGCCCATCAAAACGACCTCCGCGACGTCTTCCTCCTCGGCGACAA
CGGCGGTGGTCACGCCTACGACGTTCTCGTCGTCGACAACTGCTGCTCCG
AACGTTGCCACTGCGGCTTCTGTTGGTGCTGTTGGTGCTGCTGGTGTCGA
CAACCGCGACACAAATCCCTTTGGACAACATGAATACCAACAACGACCAC
AACAACCACCGCCACGACGACATCGCACAAACAACATCAATAACACCCAC
AACATCAACAATCACTACCACGCTCCAACTACCGCCAACCCCATAAAAAT
GGGTTCATCATTGTCATCACCATCGAAACCGCTGCCGGCAACACCACCGC
CAACTCCAACAACGTCCTGTTCCCCGCCGGCACCTTCAACAACAACAACC
AAATTGACTTCATCAACGACCACTGGACCGGCAACCGCCACTCCACTGAT
CCTCTTGAATGTCGGCAAAAACGGACGAAAACAAAACTTGAACAACGCCG
AAATCCCCACCCACCGCCCCACCTCCAAACCCCACCACGCCGCCGCTGCC
GCCCCCAGCAGCAGCAGCAGCAGCACCGGAAACGCTCCCGGTGGCACAGG
GGCTTCGCAGGAAGATCCATACTCCCTGCGGGCCCAACGCATGCGCTCAC
CGTCGAAGCTCCTGGGCACGAGCATCACTCGATCAGTGGTTGGGTCTTCG
GCCAGGGGGTCGTCCACGTCTCCCGTCCGCGGCAGGGGAACGGGGGTTGT
TGAGATTCGGAGTCTAGAGGAGAGCTACGGCAGGATGGGCATGGGCGCAG
GAGGAAGCAGGGGGAGAGGGGCTATGGGAAGCAGCTCTCGGACGATGGGC
GCCGAGGCCGGCTCCAACCATGTTATGCCTCCGCCACCGCCAGGAGAGAG
GCGAATGCATAGTTCTTCTTCCGCCGCCGAGACTGCCGCCGATGGGCGTG
ACGGTAAGGCTGGTGCAGCGCCGCGCCTCAGGACATTTCAGGAGAAGTTA
GGACAGGGAGAAAAGAACTCTCGGACGATGGGCGCCGAGGCCGGCTCCAA
CCATGTTATGCCTCCGCCACCGCCAGGAGAGAGGCGAATGCATAGTTCTT
CTTCCGCCGCCGAGACTGCCGCCGATGGGCGTGACGGTAAGGCTGGTGCA
GCGCCGCGCCTCAGGACATTTCAGGAGAAGTTAGGACAGGGAGAAAAGAA
GTGGTGGCCCTGGGCGTACGAAGTGCTGGTGGTTCAGTGGACTCAAGTGT
TGGCGACGGTTGACGGGAGGGTCCAGGGTGGGGATGGTGTTGGGGTGGTG
GCCCTGGGCGTACGAAGTGCTGGTGGTTCAGTGGACTCAAGTGTTGGCGA
CGGTTGACGGGAGGGTCCAGGGTGGGGATGGTGTTGGG
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