mRNA_H-paniculata_contig4379.11109.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4379.11109.1
Unique NamemRNA_H-paniculata_contig4379.11109.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4379.11109.1 vs. uniprot
Match: A0A6H5KJS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.140e-7
Identity = 36/94 (38.30%), Postives = 46/94 (48.94%), Query Frame = 1 
Query:    1 VLGLPGDAHARFHRRQS----WNDVVAAYRPLFQHVHATPVHVLLRLANERLYVAPHVQEYLVALHPNWQRTLAQWTHDVNAALGNGGDPHAPF 270
            V G+    +  F R ++    W+ +V  YR  F      P  VLLRL   R+Y+APHVQEYLV L    +  L  +T  V  AL N   P  PF
Sbjct:   39 VFGMDRSVYIYFPRGRNEDNGWDRLVQRYRSTFYAHGIRPYQVLLRLPRGRIYIAPHVQEYLVHLDQECESHLTFYTVAVQNALRNPAQPLPPF 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4379.11109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJS3_9PHAE3.140e-738.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4379contigH-paniculata_contig4379:14171..14510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930324.2220905-CDS-H-paniculata_contig4379:14170..145091622930324.2220905-CDS-H-paniculata_contig4379:14170..14509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4379 14171..14509 +
1691481241.8200862-CDS-H-paniculata_contig4379:14170..145091691481241.8200862-CDS-H-paniculata_contig4379:14170..14509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4379 14171..14509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4379.11109.1prot_H-paniculata_contig4379.11109.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4379 14171..14509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4379.11109.1

>prot_H-paniculata_contig4379.11109.1 ID=prot_H-paniculata_contig4379.11109.1|Name=mRNA_H-paniculata_contig4379.11109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
VLGLPGDAHARFHRRQSWNDVVAAYRPLFQHVHATPVHVLLRLANERLYV
APHVQEYLVALHPNWQRTLAQWTHDVNAALGNGGDPHAPFQVSRNRDGDE
DGGSEANAGTGGR
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mRNA from alignment at H-paniculata_contig4379:14171..14510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4379.11109.1 ID=mRNA_H-paniculata_contig4379.11109.1|Name=mRNA_H-paniculata_contig4379.11109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=340bp|location=Sequence derived from alignment at H-paniculata_contig4379:14171..14510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTGGGTCTGCCAGGTGACGCGCACGCCAGGTTCCACCGACGCCAGTC
TTGGAACGACGTAGTGGCGGCGTATCGCCCCCTGTTTCAGCATGTACACG
CGACACCAGTGCATGTTCTCCTGCGTCTCGCAAATGAGAGACTCTACGTC
GCCCCTCACGTACAAGAATACCTCGTGGCCTTGCACCCAAACTGGCAGCG
CACCCTTGCGCAATGGACGCACGACGTCAATGCGGCTCTGGGTAACGGCG
GTGACCCCCATGCCCCATTCCAGGTGAGCAGAAATAGAGATGGCGACGAA
GACGGGGGAAGCGAGGCCAACGCCGGCACGGGCGGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4379:14171..14510+

>mRNA_H-paniculata_contig4379.11109.1 ID=mRNA_H-paniculata_contig4379.11109.1|Name=mRNA_H-paniculata_contig4379.11109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig4379:14171..14510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTGGGTCTGCCAGGTGACGCGCACGCCAGGTTCCACCGACGCCAGTC
TTGGAACGACGTAGTGGCGGCGTATCGCCCCCTGTTTCAGCATGTACACG
CGACACCAGTGCATGTTCTCCTGCGTCTCGCAAATGAGAGACTCTACGTC
GCCCCTCACGTACAAGAATACCTCGTGGCCTTGCACCCAAACTGGCAGCG
CACCCTTGCGCAATGGACGCACGACGTCAATGCGGCTCTGGGTAACGGCG
GTGACCCCCATGCCCCATTCCAGGTGAGCAGAAATAGAGATGGCGACGAA
GACGGGGGAAGCGAGGCCAACGCCGGCACGGGCGGGAGGGTCCTGGGTCT
GCCAGGTGACGCGCACGCCAGGTTCCACCGACGCCAGTCTTGGAACGACG
TAGTGGCGGCGTATCGCCCCCTGTTTCAGCATGTACACGCGACACCAGTG
CATGTTCTCCTGCGTCTCGCAAATGAGAGACTCTACGTCGCCCCTCACGT
ACAAGAATACCTCGTGGCCTTGCACCCAAACTGGCAGCGCACCCTTGCGC
AATGGACGCACGACGTCAATGCGGCTCTGGGTAACGGCGGTGACCCCCAT
GCCCCATTCCAGGTGAGCAGAAATAGAGATGGCGACGAAGACGGGGGAAG
CGAGGCCAACGCCGGCACGGGCGGGAGG
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