prot_H-paniculata_contig43739.11102.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig43739.11102.1
Unique Nameprot_H-paniculata_contig43739.11102.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length96
Homology
BLAST of mRNA_H-paniculata_contig43739.11102.1 vs. uniprot
Match: A0A2K3KMU5_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KMU5_TRIPR)

HSP 1 Score: 52.0 bits (123), Expect = 3.730e-6
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    1 WIIDSGCTGHHLTPQRNLFQIFRQVVCSPIATASKGELDVEGQGDVEGLIWTAEGAMRIIVCDVFYVPEASDSILSVERMVSQGMEAYLVRN 92
            W ++SGC+ +H+TP R     F     S I      +L VEG G++  +I + +G  ++I+ DVF+VPE S ++LS+ ++V +G    +  N
Sbjct:   15 WYLNSGCS-NHMTPYREWLTSFDASKKSSIKLVDGRKLVVEGIGNI--VIKSKKGG-KVIISDVFFVPEMSCNLLSLGQLVQKGFSVNMEDN 102          
BLAST of mRNA_H-paniculata_contig43739.11102.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI)

HSP 1 Score: 50.4 bits (119), Expect = 4.780e-5
Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 0
Query:    1 WIIDSGCTGHHLTPQRNLFQIFRQVVCSPIATASKGELDVEGQGDVEGLIWTAEGAMRIIVCDVFYVPEASDSILSVERMVSQGMEAY 88
            W+IDSGCT +H+TP+ + F+   Q   S +   +   +DV+G+G V   + T      I+  DV +VPE S S+LSV +M+ +    +
Sbjct:  291 WLIDSGCT-NHMTPELSYFKELDQSYKSKVKIGNGDLVDVKGKGVVS--VETPTCIKYIL--DVLFVPEISQSLLSVGQMLEKNYSLH 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43739.11102.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2K3KMU5_TRIPR3.730e-633.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GVH9_VITVI4.780e-535.23Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43739contigH-paniculata_contig43739:841..1128 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43739.11102.1mRNA_H-paniculata_contig43739.11102.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig43739 841..1128 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig43739.11102.1 ID=prot_H-paniculata_contig43739.11102.1|Name=mRNA_H-paniculata_contig43739.11102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
WIIDSGCTGHHLTPQRNLFQIFRQVVCSPIATASKGELDVEGQGDVEGLI
WTAEGAMRIIVCDVFYVPEASDSILSVERMVSQGMEAYLVRNGDNC
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