mRNA_H-paniculata_contig43620.11088.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43620.11088.1
Unique NamemRNA_H-paniculata_contig43620.11088.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43620.11088.1 vs. uniprot
Match: A0A6H5JRI0_9PHAE (CID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRI0_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 4.530e-55
Identity = 86/114 (75.44%), Postives = 104/114 (91.23%), Query Frame = 1 
Query:  118 ESAHDAQRRVLSLTLDGCGLIRRIGKSMKFPVRVMLTAFHLFHHYQWCGSVEAFRFPPSSLPAVCLACLVAATKAEDCNAKLDTLLKEMRQLEPLLPPMDGVFPLGKRPDTKEV 459
            ES  + QR+ LSLTLDGCGLIRRIGK+M+FPVRVMLTAFHLFHHYQWCGSV +F+F P  LPAVCLACL+AATKAEDCNAKL+ +L++M+QLEP+LPP++G+FPLG+RP +KEV
Sbjct:  371 ESPQELQRKALSLTLDGCGLIRRIGKAMRFPVRVMLTAFHLFHHYQWCGSVSSFKFSPPKLPAVCLACLLAATKAEDCNAKLEVMLQQMKQLEPILPPLEGIFPLGQRPTSKEV 484
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BLAST of mRNA_H-paniculata_contig43620.11088.1 vs. uniprot
Match: D7FYQ1_ECTSI (CID domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYQ1_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.680e-53
Identity = 85/114 (74.56%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:  118 ESAHDAQRRVLSLTLDGCGLIRRIGKSMKFPVRVMLTAFHLFHHYQWCGSVEAFRFPPSSLPAVCLACLVAATKAEDCNAKLDTLLKEMRQLEPLLPPMDGVFPLGKRPDTKEV 459
            ES  + QR+ LSLTLDGCGLIRRIGK+M+FP RVMLTAFHLFHHYQWCG V +F+F P  LPAVCLACL+AATKAEDCNAKL+ +L +MRQLEP+LPP++G+FPLG+RP +KEV
Sbjct:  367 ESPQELQRKALSLTLDGCGLIRRIGKAMRFPGRVMLTAFHLFHHYQWCGLVSSFKFSPPKLPAVCLACLLAATKAEDCNAKLEVMLHQMRQLEPILPPLEGIFPLGQRPTSKEV 480
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BLAST of mRNA_H-paniculata_contig43620.11088.1 vs. uniprot
Match: A0A836CAK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.850e-17
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:  154 LTLDGCGLIRRIGKSMKFPVRVMLTAFHLFHHYQWCGSVEAFRFPPSSLPAVCLACLVAATKAEDCNAKLDTLLKEMRQLEPLLPP 411
            L +D C +IR IG++M++  R ML+AFH FHH+ W        +P + LPAVCLACL  A KAED   ++D L+    Q++  LPP
Sbjct:    2 LKMDACAMIRHIGRAMRYGERAMLSAFHFFHHFHWVSLDAGQMWPATDLPAVCLACLHLAGKAEDTAFRIDYLMDIADQMKMALPP 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43620.11088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRI0_9PHAE4.530e-5575.44CID domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYQ1_ECTSI1.680e-5374.56CID domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CAK0_9STRA2.850e-1745.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43620contigH-paniculata_contig43620:481..1669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-26_004300.1
Exons2
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930321.43979-CDS-H-paniculata_contig43620:480..7361622930321.43979-CDS-H-paniculata_contig43620:480..736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43620 481..736 -
1691481240.6983073-CDS-H-paniculata_contig43620:480..7361691481240.6983073-CDS-H-paniculata_contig43620:480..736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43620 481..736 -
1622930321.4633224-CDS-H-paniculata_contig43620:1466..16691622930321.4633224-CDS-H-paniculata_contig43620:1466..1669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43620 1467..1669 -
1691481240.7165473-CDS-H-paniculata_contig43620:1466..16691691481240.7165473-CDS-H-paniculata_contig43620:1466..1669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43620 1467..1669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43620.11088.1prot_H-paniculata_contig43620.11088.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43620 481..1669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43620.11088.1

>prot_H-paniculata_contig43620.11088.1 ID=prot_H-paniculata_contig43620.11088.1|Name=mRNA_H-paniculata_contig43620.11088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
GAGGGGGVANTVTPSPEGSQTEIASPDGGGVGAGVMGSKESAHDAQRRVL
SLTLDGCGLIRRIGKSMKFPVRVMLTAFHLFHHYQWCGSVEAFRFPPSSL
PAVCLACLVAATKAEDCNAKLDTLLKEMRQLEPLLPPMDGVFPLGKRPDT
KEV
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mRNA from alignment at H-paniculata_contig43620:481..1669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43620.11088.1 ID=mRNA_H-paniculata_contig43620.11088.1|Name=mRNA_H-paniculata_contig43620.11088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1189bp|location=Sequence derived from alignment at H-paniculata_contig43620:481..1669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGGGGGGGAGGGGGGGTTGCTAATACCGTAACACCCTCTCCTGA
GGGAAGCCAGACGGAGATAGCAAGTCCCGATGGCGGCGGGGTTGGCGCGG
GGGTGATGGGGAGTAAAGAGAGCGCGCATGATGCGCAGCGGCGGGTATTG
TCGCTTACGCTGGATGGGTGCGGTCTCATCCGGCGGATAGGAAAATCCAT
GAAGTGAGCATGTTGAGAGAGAAATTACTCTTGTTGGTGTTTTTTGCGTG
TGTCTGATGGGATTCCGTGGGCTGGAGTGGTTGTTGGTTGGATGTTTTTT
TTCTCGTGATGGAGAGCGCATTTTTATCTAAAACTTTTTTGTATAGCATT
TATCTATTATTTGTAGTCGACCGAGACATTATGGTTTTGATCATGCTATT
CTTTTGTCAACGTGGTGCGGTTATTAAACTTTTTATTAATGGCGTTGCTG
AGACAACAACGCAAAAACTAGATACAAGAAAAAAAAAAAAATTCTGGAAG
TTTCTAGGCTAGCCTGTTACAACGAGGTGCTTCATACGTTTCGCCTACCA
CTTGTGCCATATACGTTTCTTTAGATTGGAATAAAATAAAACACAAGCGT
GAAAACCCCAAAACTACCTACACTCGATAAAGATCCGATGTTTTTCACGC
AGGGTATCATATACTGTTTGAGTACTGATCTACGCTGGACTTGAAACTTC
GTTTAACTCAACTACACACCCGCTGCCGACAAGCTTTTACAGCCCCCTGC
ACTAAAACAAAGCGATGTGTACGATTATCTTATGCGGCTGCCACCGCCAC
CACTTTCAAGCCTTTTCTCTCCCCCCCACCGCTGGCTCTCCCGCCCGCCG
GCCTGCCCACATACGTTTCCCTGTGCCCTCTATTGAAACGCCTCCAATAC
CGCATGGGGGAAAAAATGGCACGGAAAATTAAGATTTCCAGTGCGGGTGA
TGCTCACGGCGTTCCATCTTTTCCATCATTACCAGTGGTGCGGGTCAGTT
GAGGCTTTTCGTTTCCCTCCATCCAGCCTCCCGGCGGTGTGCCTCGCCTG
CCTTGTGGCGGCGACGAAGGCGGAGGATTGCAACGCCAAGCTGGACACGC
TGCTGAAGGAGATGCGGCAGCTGGAGCCCCTCCTGCCGCCGATGGACGGG
GTGTTTCCACTCGGAAAGAGACCGGACACGAAGGAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig43620:481..1669-

>mRNA_H-paniculata_contig43620.11088.1 ID=mRNA_H-paniculata_contig43620.11088.1|Name=mRNA_H-paniculata_contig43620.11088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig43620:481..1669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGGGGGGGAGGGGGGGTTGCTAATACCGTAACACCCTCTCCTGA
GGGAAGCCAGACGGAGATAGCAAGTCCCGATGGCGGCGGGGTTGGCGCGG
GGGTGATGGGGAGTAAAGAGAGCGCGCATGATGCGCAGCGGCGGGTATTG
TCGCTTACGCTGGATGGGTGCGGTCTCATCCGGCGGATAGGAAAATCCAT
GAAGGGGCGGGGGGGGGAGGGGGGGTTGCTAATACCGTAACACCCTCTCC
TGAGGGAAGCCAGACGGAGATAGCAAGTCCCGATGGCGGCGGGGTTGGCG
CGGGGGTGATGGGGAGTAAAGAGAGCGCGCATGATGCGCAGCGGCGGGTA
TTGTCGCTTACGCTGGATGGGTGCGGTCTCATCCGGCGGATAGGAAAATC
CATGAAATTTCCAGTGCGGGTGATGCTCACGGCGTTCCATCTTTTCCATC
ATTACCAGTGGTGCGGGTCAGTTGAGGCTTTTCGTTTCCCTCCATCCAGC
CTCCCGGCGGTGTGCCTCGCCTGCCTTGTGGCGGCGACGAAGGCGGAGGA
TTGCAACGCCAAGCTGGACACGCTGCTGAAGGAGATGCGGCAGCTGGAGC
CCCTCCTGCCGCCGATGGACGGGGTGTTTCCACTCGGAAAGAGACCGGAC
ACGAAGGAGGTAATTTCCAGTGCGGGTGATGCTCACGGCGTTCCATCTTT
TCCATCATTACCAGTGGTGCGGGTCAGTTGAGGCTTTTCGTTTCCCTCCA
TCCAGCCTCCCGGCGGTGTGCCTCGCCTGCCTTGTGGCGGCGACGAAGGC
GGAGGATTGCAACGCCAAGCTGGACACGCTGCTGAAGGAGATGCGGCAGC
TGGAGCCCCTCCTGCCGCCGATGGACGGGGTGTTTCCACTCGGAAAGAGA
CCGGACACGAAGGAGGTA
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