prot_H-paniculata_contig43585.11080.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig43585.11080.1
Unique Name	prot_H-paniculata_contig43585.11080.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	108

Homology

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: PSBD_HETA2 (Photosystem II D2 protein n=340 Tax=cellular organisms TaxID=131567 RepID=PSBD_HETA2)

HSP 1 Score: 224 bits (571), Expect = 4.620e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 108
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI
Sbjct:  176 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 283

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: A8CCU2_9EUKA (Photosystem II D2 protein (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=A8CCU2_9EUKA)

HSP 1 Score: 219 bits (559), Expect = 6.170e-70
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 108
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPV G+WTS++
Sbjct:  143 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVAGMWTSSL 250

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: PSBD_GALSU (Photosystem II D2 protein n=20 Tax=cellular organisms TaxID=131567 RepID=PSBD_GALSU)

HSP 1 Score: 221 bits (562), Expect = 1.060e-69
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 108
            AIFRF+LFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+AANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTS+I
Sbjct:  176 AIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSI 283

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: PSBD_NEOYE (Photosystem II D2 protein n=59 Tax=Eukaryota TaxID=2759 RepID=PSBD_NEOYE)

HSP 1 Score: 219 bits (559), Expect = 3.000e-69
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA 107
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA
Sbjct:  176 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA 282

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: A0A023HR93_NEOPR (Photosystem II D2 protein n=12 Tax=cellular organisms TaxID=131567 RepID=A0A023HR93_NEOPR)

HSP 1 Score: 219 bits (559), Expect = 3.000e-69
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA 107
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA
Sbjct:  176 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA 282

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: A0A7W2A2C8_9CYAN (Photosystem II D2 protein (Photosystem q(A) protein) (Fragment) n=1 Tax=Cylindrospermopsis raciborskii CS-506_D TaxID=2585137 RepID=A0A7W2A2C8_9CYAN)

HSP 1 Score: 212 bits (540), Expect = 1.300e-68
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 108
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+ +NTF AF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SA+
Sbjct:   44 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEGSNTFPAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAV 151

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: C6EQR8_9MONI (Photosystem II D2 protein (Fragment) n=1 Tax=Ptisana attenuata TaxID=167731 RepID=C6EQR8_9MONI)

HSP 1 Score: 213 bits (543), Expect = 1.610e-68
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 108
            AIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SAI
Sbjct:   47 AIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAI 154

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: A0A251TFU8_HELAN (Putative photosynthetic reaction centre, L/M n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TFU8_HELAN)

HSP 1 Score: 211 bits (538), Expect = 2.160e-68
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 108
            AIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQ+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SA+
Sbjct:   69 AIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAL 176

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: PSBD_NOSP7 (Photosystem II D2 protein n=96 Tax=Cyanobacteria TaxID=1117 RepID=PSBD_NOSP7)

HSP 1 Score: 217 bits (553), Expect = 2.420e-68
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 108
            AIFRFLLFLQGFHNWTLNPFHMMGVAG+LGGALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SA+
Sbjct:  176 AIFRFLLFLQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAV 283

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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: C6EQW2_9MONI (Photosystem II D2 protein (Fragment) n=2 Tax=Polypodiales TaxID=3268 RepID=C6EQW2_9MONI)

HSP 1 Score: 213 bits (543), Expect = 4.280e-68
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 0

Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 108
            AIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SAI
Sbjct:   78 AIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAI 185

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBD_HETA2	4.620e-71	100.00	Photosystem II D2 protein n=340 Tax=cellular organ...	[more]
A8CCU2_9EUKA	6.170e-70	96.30	Photosystem II D2 protein (Fragment) n=3 Tax=Eukar...	[more]
PSBD_GALSU	1.060e-69	97.22	Photosystem II D2 protein n=20 Tax=cellular organi...	[more]
PSBD_NEOYE	3.000e-69	98.13	Photosystem II D2 protein n=59 Tax=Eukaryota TaxID...	[more]
A0A023HR93_NEOPR	3.000e-69	98.13	Photosystem II D2 protein n=12 Tax=cellular organi...	[more]
A0A7W2A2C8_9CYAN	1.300e-68	92.59	Photosystem II D2 protein (Photosystem q(A) protei...	[more]
C6EQR8_9MONI	1.610e-68	93.52	Photosystem II D2 protein (Fragment) n=1 Tax=Ptisa...	[more]
A0A251TFU8_HELAN	2.160e-68	91.67	Putative photosynthetic reaction centre, L/M n=1 T...	[more]
PSBD_NOSP7	2.420e-68	94.44	Photosystem II D2 protein n=96 Tax=Cyanobacteria T...	[more]
C6EQW2_9MONI	4.280e-68	93.52	Photosystem II D2 protein (Fragment) n=2 Tax=Polyp...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 2..108 e-value: 4.6E-29 score: 101.4
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 2..108
IPR000484	Photosynthetic reaction centre, L/M	PROSITE	PS00244	REACTION_CENTER	coord: 14..40
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 1..108 e-value: 7.3E-10 score: 40.8
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 2..108
None	No IPR available	PANTHER	PTHR33149:SF7		coord: 2..108
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 90..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..37
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 38..89
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 108..108
None	No IPR available	TMHMM	TMhelix		coord: 90..107
None	No IPR available	TMHMM	TMhelix		coord: 20..42

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig43585	contig	H-paniculata_contig43585:1350..1673 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig43585.11080.1	mRNA_H-paniculata_contig43585.11080.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig43585 1350..1673 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig43585.11080.1 ID=prot_H-paniculata_contig43585.11080.1|Name=mRNA_H-paniculata_contig43585.11080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG
DAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPV
TGLWTSAI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000484	Photo_RC_L/M
IPR036854	Photo_II_D1/D2_sf