mRNA_H-paniculata_contig43585.11080.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43585.11080.1
Unique NamemRNA_H-paniculata_contig43585.11080.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: PSBD_HETA2 (Photosystem II D2 protein n=340 Tax=cellular organisms TaxID=131567 RepID=PSBD_HETA2)

HSP 1 Score: 224 bits (571), Expect = 4.620e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 324
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI
Sbjct:  176 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 283
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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: A8CCU2_9EUKA (Photosystem II D2 protein (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=A8CCU2_9EUKA)

HSP 1 Score: 219 bits (559), Expect = 6.170e-70
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 324
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPV G+WTS++
Sbjct:  143 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVAGMWTSSL 250
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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: PSBD_GALSU (Photosystem II D2 protein n=20 Tax=cellular organisms TaxID=131567 RepID=PSBD_GALSU)

HSP 1 Score: 221 bits (562), Expect = 1.060e-69
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 324
            AIFRF+LFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+AANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTS+I
Sbjct:  176 AIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSI 283
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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: PSBD_NEOYE (Photosystem II D2 protein n=59 Tax=Eukaryota TaxID=2759 RepID=PSBD_NEOYE)

HSP 1 Score: 219 bits (559), Expect = 3.000e-69
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA 321
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA
Sbjct:  176 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA 282
[Close]
BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: A0A023HR93_NEOPR (Photosystem II D2 protein n=12 Tax=cellular organisms TaxID=131567 RepID=A0A023HR93_NEOPR)

HSP 1 Score: 219 bits (559), Expect = 3.000e-69
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA 321
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA
Sbjct:  176 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA 282
[Close]
BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: A0A7W2A2C8_9CYAN (Photosystem II D2 protein (Photosystem q(A) protein) (Fragment) n=1 Tax=Cylindrospermopsis raciborskii CS-506_D TaxID=2585137 RepID=A0A7W2A2C8_9CYAN)

HSP 1 Score: 212 bits (540), Expect = 1.300e-68
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 324
            AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+ +NTF AF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SA+
Sbjct:   44 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEGSNTFPAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAV 151
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BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: C6EQR8_9MONI (Photosystem II D2 protein (Fragment) n=1 Tax=Ptisana attenuata TaxID=167731 RepID=C6EQR8_9MONI)

HSP 1 Score: 213 bits (543), Expect = 1.610e-68
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 324
            AIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SAI
Sbjct:   47 AIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAI 154
[Close]
BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: A0A251TFU8_HELAN (Putative photosynthetic reaction centre, L/M n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TFU8_HELAN)

HSP 1 Score: 211 bits (538), Expect = 2.160e-68
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 324
            AIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQ+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SA+
Sbjct:   69 AIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAL 176
[Close]
BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: PSBD_NOSP7 (Photosystem II D2 protein n=96 Tax=Cyanobacteria TaxID=1117 RepID=PSBD_NOSP7)

HSP 1 Score: 217 bits (553), Expect = 2.420e-68
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 324
            AIFRFLLFLQGFHNWTLNPFHMMGVAG+LGGALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SA+
Sbjct:  176 AIFRFLLFLQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAV 283
[Close]
BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Match: C6EQW2_9MONI (Photosystem II D2 protein (Fragment) n=2 Tax=Polypodiales TaxID=3268 RepID=C6EQW2_9MONI)

HSP 1 Score: 213 bits (543), Expect = 4.280e-68
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAI 324
            AIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SAI
Sbjct:   78 AIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAI 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43585.11080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBD_HETA24.620e-71100.00Photosystem II D2 protein n=340 Tax=cellular organ... [more]
A8CCU2_9EUKA6.170e-7096.30Photosystem II D2 protein (Fragment) n=3 Tax=Eukar... [more]
PSBD_GALSU1.060e-6997.22Photosystem II D2 protein n=20 Tax=cellular organi... [more]
PSBD_NEOYE3.000e-6998.13Photosystem II D2 protein n=59 Tax=Eukaryota TaxID... [more]
A0A023HR93_NEOPR3.000e-6998.13Photosystem II D2 protein n=12 Tax=cellular organi... [more]
A0A7W2A2C8_9CYAN1.300e-6892.59Photosystem II D2 protein (Photosystem q(A) protei... [more]
C6EQR8_9MONI1.610e-6893.52Photosystem II D2 protein (Fragment) n=1 Tax=Ptisa... [more]
A0A251TFU8_HELAN2.160e-6891.67Putative photosynthetic reaction centre, L/M n=1 T... [more]
PSBD_NOSP72.420e-6894.44Photosystem II D2 protein n=96 Tax=Cyanobacteria T... [more]
C6EQW2_9MONI4.280e-6893.52Photosystem II D2 protein (Fragment) n=2 Tax=Polyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43585contigH-paniculata_contig43585:1350..1673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue1.3e-56
Seed eggNOG ortholog2880.D1J6Z4
Preferred namepsbD
KEGG koko:K02706
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.photosynthetic electron transport in photosystem II
EggNOG OGs2CNIT@1,2QWJF@2759
EC1.10.3.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930319.9428208-CDS-H-paniculata_contig43585:1349..16731622930319.9428208-CDS-H-paniculata_contig43585:1349..1673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43585 1350..1673 +
1691481240.0936038-CDS-H-paniculata_contig43585:1349..16731691481240.0936038-CDS-H-paniculata_contig43585:1349..1673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43585 1350..1673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43585.11080.1prot_H-paniculata_contig43585.11080.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43585 1350..1673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43585.11080.1

>prot_H-paniculata_contig43585.11080.1 ID=prot_H-paniculata_contig43585.11080.1|Name=mRNA_H-paniculata_contig43585.11080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
AIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG
DAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPV
TGLWTSAI
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mRNA from alignment at H-paniculata_contig43585:1350..1673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43585.11080.1 ID=mRNA_H-paniculata_contig43585.11080.1|Name=mRNA_H-paniculata_contig43585.11080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig43585:1350..1673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTATCTTCCGTTTTTTATTATTTTTACAAGGATTTCATAATTGGACGTT
AAATCCATTTCATATGATGGGTGTAGCAGGTATTTTAGGAGGAGCACTAT
TATGTGCCATTCATGGAGCTACTGTAGAAAATACATTATTTGAGGATGGT
GATGCAGCAAACACGTTTCGTGCTTTTACACCCACACAATCTGAAGAGAC
ATATTCTATGGTTACAGCTAACCGTTTTTGGTCACAAATTTTTGGGGTTG
CTTTTTCAAATAAACGTTGGTTACATTTCTTTATGCTTTTTGTTCCAGTA
ACAGGTTTATGGACAAGTGCAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig43585:1350..1673+

>mRNA_H-paniculata_contig43585.11080.1 ID=mRNA_H-paniculata_contig43585.11080.1|Name=mRNA_H-paniculata_contig43585.11080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig43585:1350..1673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTATCTTCCGTTTTTTATTATTTTTACAAGGATTTCATAATTGGACGTT
AAATCCATTTCATATGATGGGTGTAGCAGGTATTTTAGGAGGAGCACTAT
TATGTGCCATTCATGGAGCTACTGTAGAAAATACATTATTTGAGGATGGT
GATGCAGCAAACACGTTTCGTGCTTTTACACCCACACAATCTGAAGAGAC
ATATTCTATGGTTACAGCTAACCGTTTTTGGTCACAAATTTTTGGGGTTG
CTTTTTCAAATAAACGTTGGTTACATTTCTTTATGCTTTTTGTTCCAGTA
ACAGGTTTATGGACAAGTGCAATTGCTATCTTCCGTTTTTTATTATTTTT
ACAAGGATTTCATAATTGGACGTTAAATCCATTTCATATGATGGGTGTAG
CAGGTATTTTAGGAGGAGCACTATTATGTGCCATTCATGGAGCTACTGTA
GAAAATACATTATTTGAGGATGGTGATGCAGCAAACACGTTTCGTGCTTT
TACACCCACACAATCTGAAGAGACATATTCTATGGTTACAGCTAACCGTT
TTTGGTCACAAATTTTTGGGGTTGCTTTTTCAAATAAACGTTGGTTACAT
TTCTTTATGCTTTTTGTTCCAGTAACAGGTTTATGGACAAGTGCAATT
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