mRNA_H-paniculata_contig43371.11058.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: G4TMG6_SERID (Uncharacterized protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TMG6_SERID) HSP 1 Score: 153 bits (386), Expect = 4.750e-40 Identity = 87/247 (35.22%), Postives = 139/247 (56.28%), Query Frame = 1
Query: 10 EPKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFV-----------------KLHPDFSPLL-PRHTTNLLAAVYVDDLVIAGRR-EKVDEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
EP + E+LKRP+ + A EE ++NGTW+ RLP G+KAI ++W+FK K + DGS+++YK R+V +G++Q EG D ET A+ AR LRT +LAA D+ELE +D+ A+ N ++ ++++ +L D S + R + ++ V+VDDL+ A + E + K + RF+I D G S +LG++ RD + ++SQ +YI ++L+ Y EC G T
Sbjct: 54 EPTTLGESLKRPDGDNYVQAAIEEVRAHLENGTWKLV---RLPQGKKAIGSRWVFKIKRDADGSISKYKGRIVAKGYAQREGIDYTETFAQTARFGALRTITALAALEDWELESVDISTAFLNGEIDAKVYMQKLEGVEFEGYEEIGFKRLESDHSVFIYERDSVKIIVPVHVDDLLFASKSSEAIQMVKDELKARFKIHDQGPTSFLLGVKPERDRQSHTISLSQPAYIEQILETYKMQECNGADT 297
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: A0A4S4M1D7_9APHY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1D7_9APHY) HSP 1 Score: 146 bits (368), Expect = 1.700e-36 Identity = 83/273 (30.40%), Postives = 143/273 (52.38%), Query Frame = 1
Query: 10 EPKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLHPDFSP--------------------------------------------LLPRHTTNLLAAVYVDDLVIAGR-REKVDEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
EP++ AEA++RP+A+K A ++E + ++NGTWE +LP GRKAI ++W+F+ K DGS+ RYK RLV QGF+Q G + ET A + +TLRT ++AA D E+E +D AY N +++++++K F+ +L T N++ V+VDD + + + + + K + +RF+++DLG ++++LG+++ RD ++SQ Y ++L + +CR V T
Sbjct: 669 EPRTFAEAMRRPDADKWYQAAQDEIKSHLENGTWEL---AQLPEGRKAIGSRWVFRIKYNADGSIERYKARLVAQGFAQRPGLEYDETFASTLKWATLRTILAIAAIEDMEIECIDFSTAYLNGEIDKDVYMKQPEGFADGDQVCKLGKGIYGLKQGGRLWYKKLAATLVSMGFKILRSDNSVYVLSNDTVNVVIPVFVDDCTLVSKDKAAIQKXKDELLKRFKLRDLGPINQLLGVQITRDRSKRTLSLSQRQYXXDILAKFXMADCRPVGT 938
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: A0A6L2LES7_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LES7_TANCI) HSP 1 Score: 142 bits (358), Expect = 2.030e-36 Identity = 85/240 (35.42%), Postives = 136/240 (56.67%), Query Frame = 1
Query: 1 IQGEPKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLHPDFSPLLPRHTTNL--------------LAAVYVDDLVIAGR-REKVDEFKHNISQRFRIKDLGSLSRVLGIEVRRDHP--------NGDTTISQGSYIREV 651
I+ +P++ +EA+ + L+ + E +++ N TWE D LP G KA+ KWI KRK++ DGS+ +YK RLV+QGF Q EG D F+T A VAR+ST+R +L A HD + MDV A+ N ++EE+++K F ++P H + L + +YVDD++I G +++V++ K +S + +KDLG +LGI ++R + N T++SQ Y R +
Sbjct: 112 IEEDPRTLSEAMASRDVAFLKETFQSEIDSIIHNDTWELTD---LPPGGKALGCKWILKRKIKVDGSIDKYKARLVIQGFRQKEGIDFFDTYASVARISTIRLLLALTAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGF--VMPGHESKLTSVCIANLMLLKGVIICLYVDDMLIFGTDQDQVNKTKEFLSSKLDMKDLGKAEVILGIRIKRGNNDPTVKFRHNKGTSVSQLEYSRAI 346
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: A0A8J5ZIB2_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZIB2_9ROSI) HSP 1 Score: 144 bits (362), Expect = 4.320e-36 Identity = 96/243 (39.51%), Postives = 131/243 (53.91%), Query Frame = 1
Query: 13 PKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLHPDFSPL------LPRHT-------TNLLAA--VYVDDLVIAGR-REKVDEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
P S AEALK P K R A+EEE L N TW D LP G+KA+ KWIF K +GS+ RYK RLV +GF Q G D ET A VA+++T+R SLA +D++L +DV A+ N +EEE++++L P + L HT TN A VYVDD+++ G E++ K +++ KDLG L LG+EV R I+Q Y+ ++LK GF C+ T
Sbjct: 183 PTSIAEALKDP---KWRRAVEEEICALEKNATWTITD---LPQGKKAVGCKWIFAVKYNSNGSIQRYKARLVARGFMQTYGIDFTETFAPVAKLNTIRVLLSLAVNYDWKLHQLDVKNAFLNGKLEEEVYMQLPPSSKSIEGSNKSLADHTLFIKVTSTNKKAILIVYVDDIILTGDDEEEISNLKKLLNRELETKDLGKLRYFLGMEVARSKEG--LVINQRKYVLDLLKETGFLGCKPADT 417
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: A0A438C2R4_VITVI (Copia protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C2R4_VITVI) HSP 1 Score: 144 bits (364), Expect = 5.920e-36 Identity = 86/241 (35.68%), Postives = 134/241 (55.60%), Query Frame = 1
Query: 13 PKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLHPDFSPLLPRHTTN-------------LLAAVYVDDLVIAGR-REKVDEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
P + EALK K + A+++E L NGTW D LP G++ + KWIF K + DGSV R+K RLV +GF+Q G D ET A VA+++T+R SLA D+ L+ +D+ A+ N +EEE+++++ P F + ++ N + VYVDD++++G E++ K +S++F +KDLG+L LG+EV R +SQ YI ++LK G C+ + T
Sbjct: 794 PNTIQEALK---ISKWKKAVQDEIDALEKNGTWTITD---LPIGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAHVAKLNTIRIFLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQANHTLFVKKSHAGKMAILIVYVDDIILSGNDMEELQNLKKYLSEKFEVKDLGNLKYFLGMEVARSRKG--IVVSQRKYILDLLKETGMLGCKPIDT 1026
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: G4TTI1_SERID (Related to retrotransposon HobS hobase (N-terminal) (Fragment) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TTI1_SERID) HSP 1 Score: 134 bits (338), Expect = 1.330e-35 Identity = 79/229 (34.50%), Postives = 128/229 (55.90%), Query Frame = 1
Query: 10 EPKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLHPDFSPLLPRHTTNLLAAVYVDDLVIAGRR-EKVDEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
EP + EALKRP+ +K A EE ++NGTW+ RLP G+KAI ++W+FK K + DGS+++YK R+V +G++Q EG D ET AR LRT +LAA D+EL+ +F+ + ++P V++DDL++A + + + K+ + RF+I+D G S +LG+++ RD + ++SQ +YI ++L+ Y +C G T
Sbjct: 3 EPTTLGEALKRPDGDKYVQAATEEVRAHLENGTWKLV---RLPQGKKAIGSRWVFKIKRDADGSISKYKGRIVAKGYAQREGIDYTETFTPTARFGALRTIIALAALEDWELD----------------VFIYECDNVKIIVP---------VHIDDLLLASKSPDAIQIVKNELKARFKIRDQGPTSFLLGVKLERDRQSRTISLSQPAYIEQILETYEVRDCNGTDT 203
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: A0A0V1HEM8_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1HEM8_TRIPS) HSP 1 Score: 141 bits (355), Expect = 3.380e-35 Identity = 89/253 (35.18%), Postives = 136/253 (53.75%), Query Frame = 1
Query: 4 QGEPKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELF----------------------VKLHPDFSPLLPRHTTNLLAAVYVDDLVIAGRREKV-DEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
Q +P S EA+ RP+A++ A+ EE + +N +WE P LP +K I++KW+FK K ++DG++ + K RLV +G+SQ++G D T A S+LR SLAA+++ E++ MDV A+ N + EE++ +K P L ++ L VYVDDL+I E +E K + +RF+IKDLG LGI + +D NG +I Q YI E+L + +C+GV T
Sbjct: 149 QSDPISYEEAVNRPDAKEWLKAINEELASHRENQSWE---PAVLPPHKKVIKSKWVFKTKYKEDGTIEKRKARLVARGYSQLQGIDYEGTFAPTLGYSSLRYLLSLAAKNNLEVDQMDVVTAFLNLSLNEEIYREASRAWYGELDDTLRSFGLNRLKKEPCIY-FLRKNKIFLAVGVYVDDLLILSNNESAKNELKIALCKRFKIKDLGKAHWCLGIRIVQDVENGTQSIDQEQYIEEMLHRFKMSDCKGVKT 397
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: A0A438HLA1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HLA1_VITVI) HSP 1 Score: 140 bits (354), Expect = 6.470e-35 Identity = 86/241 (35.68%), Postives = 134/241 (55.60%), Query Frame = 1
Query: 13 PKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLHPDFSPLLPRHTTN-------------LLAAVYVDDLVIAGR-REKVDEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
P + EALK E +K A+++E L NGTW D LP G++ + KWIF K + DGSV R+K RLV +GF+Q G D ET A VA+++T+R SLA D+ L+ +D+ A+ N +EEE+++++ P F + ++ + + VYVDD++++G E++ K +S+ F +KDLG+L LG+EV R +SQ YI ++LK G C+ + T
Sbjct: 166 PNTIQEALKISEWKK---AVQDEIDALEKNGTWTITD---LPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQADHTLFVKKSHAGKMAILIVYVDDIILSGNDMEELQNLKKYLSEEFEVKDLGNLKYFLGMEVARSRKG--IVVSQRKYILDLLKETGMLGCKPIDT 398
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: A0A0V1KC64_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1KC64_TRIPS) HSP 1 Score: 141 bits (355), Expect = 9.070e-35 Identity = 88/252 (34.92%), Postives = 136/252 (53.97%), Query Frame = 1
Query: 4 QGEPKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFVKL----HPDFSPLLPRHTTN-----------------LLAAVYVDDLVIAGRREKV-DEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
Q +P S EA+ RP+A++ A+ EE + +N +WE P LP +K I++KW+FK K ++DG++ + K RLV +G+SQ++G D T A S+LR SLAA+++ E++ MDV A+ N + EE++++ + + L N L VYVDDL+I E +E K + +RF+IKDLG LGI + +D NG +I Q YI E+L + +C+GV T
Sbjct: 536 QSDPISYEEAVNRPDAKEWLKAINEELASHRENQSWE---PAVLPPHKKVIKSKWVFKTKYKEDGTIEKRKARLVARGYSQLQGIDYEGTFAPTLGYSSLRYLLSLAAKNNLEVDQMDVVTAFLNLSLNEEIYMEASRAWYGELDDTLRSFGLNRLKKEPCIYFLRKNKIFLAVGVYVDDLLILSNNESAKNELKIALCKRFKIKDLGKAHWCLGIRIVQDVENGTQSIDQEQYIEEMLHRFKMSDCKGVKT 784
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Match: A0A5E8BZK9_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZK9_9ASCO) HSP 1 Score: 141 bits (355), Expect = 1.010e-34 Identity = 92/256 (35.94%), Postives = 137/256 (53.52%), Query Frame = 1
Query: 10 EPKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKAIRTKWIFKRKLEDDGSVARYKTRLVVQGFSQVEGEDCFETSARVARMSTLRTGFSLAAEHDFELEGMDVDAAYSNAPVEEELFV--------------KLHPDFSPL-------------LPRHTTNLLAAVYVDDLVIAGRR-EKVDEFKHNISQRFRIKDLGSLSRVLGIEVRRDHPNGDTTISQGSYIREVLKIYGFDECRGVPT 693
+P S EA+ EAE A E +L NGTWE D LP GRKAI +KW+FK K + DGS+ RYK RLV GFSQVEG D ET A V R T+R ++AA+ F++ MDV+ A+ N ++E++++ K+H L +T ++ A+YVDDL+I+G E + + K ++S F++KDLG + + LG+ V++ + T+ YI ++L+ +G C V T
Sbjct: 1137 DPSSFEEAMSSEEAEFWLEACVIEMSSLKRNGTWELVD---LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKKIHGALVKLGFIRNESDYGVYTKGSGSTMVIIALYVDDLLISGNSSEVIAKTKSSLSSMFKMKDLGPVEQFLGMRVKQSPYH--ITVDVSRYIFDMLEEFGMQNCSSVKT 1387 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43371.11058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43371.11058.1 >prot_H-paniculata_contig43371.11058.1 ID=prot_H-paniculata_contig43371.11058.1|Name=mRNA_H-paniculata_contig43371.11058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp IQGEPKSAAEALKRPEAEKLRAAMEEEWGTLVDNGTWENEDPGRLPAGRKback to top mRNA from alignment at H-paniculata_contig43371:149..998- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43371.11058.1 ID=mRNA_H-paniculata_contig43371.11058.1|Name=mRNA_H-paniculata_contig43371.11058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=850bp|location=Sequence derived from alignment at H-paniculata_contig43371:149..998- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43371:149..998- >mRNA_H-paniculata_contig43371.11058.1 ID=mRNA_H-paniculata_contig43371.11058.1|Name=mRNA_H-paniculata_contig43371.11058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig43371:149..998- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |