mRNA_H-paniculata_contig43331.11050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43331.11050.1
Unique NamemRNA_H-paniculata_contig43331.11050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: D7G756_ECTSI (Propionyl-CoA carboxylase, alpha subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G756_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.080e-33
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   10 LIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGG--GGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
            + QPHV +  HAIEARVYAEDPFRKFLPSTG LVTYREP          GD  GG  G  GVRVD+GVVEGS VS++YDPMISKLIA+GETREVAL RL  ALD
Sbjct:  378 IKQPHVPFYRHAIEARVYAEDPFRKFLPSTGPLVTYREPRVTADGD--GGDAEGGXXGADGVRVDSGVVEGSEVSMFYDPMISKLIAYGETREVALGRLGSALD 479          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A835ZB92_9STRA (Propionyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB92_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.480e-25
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   13 IQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
            I PHV ++GHAIEARVYAEDPFR F+PSTG L+ Y+EP     P   + +E+      +R+D GV EGSA++++YDP+ISKLI +G  R  +L  + MALD
Sbjct:  364 IGPHVPFKGHAIEARVYAEDPFRNFMPSTGPLIRYQEPHAAFIPDGDSPEESYKRP--IRIDTGVDEGSAINMFYDPLISKLITYGADRRESLANMCMALD 462          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: W7TIZ8_9STRA (Propionyl-CoA carboxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIZ8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.140e-24
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 PSPLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD-----GELESLCF 339
            P  L    V ++G A+EARVYAEDP R FLPSTG L+TYREP   H   +    E  GG   VR+D GV EGS +S++YDPMI+KL+++G TR  AL+RL  ALD     G   +LCF
Sbjct:  392 PGRLTAQPVPFKGWAMEARVYAEDPLRGFLPSTGHLITYREPR--HLMEM----EVEGGVPAVRIDTGVYEGSEISMFYDPMIAKLVSYGSTRAEALERLNEALDAYVIQGLSHNLCF 503          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A2E4NDX0_9PROT (Propionyl-CoA carboxylase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4NDX0_9PROT)

HSP 1 Score: 105 bits (261), Expect = 7.150e-24
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   16 QPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALDG 318
            Q  ++++G AIEAR+YAEDP R FLPSTG LV YREP+          D+ G     VR+D+GVVEGS +S++YDPMI+KLIA G TRE A++RLA AL G
Sbjct:  325 QSEIAFRGWAIEARLYAEDPARGFLPSTGRLVRYREPQ----------DKTG-----VRIDSGVVEGSEISVFYDPMIAKLIASGTTRERAVERLASALGG 410          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A1Q7TW49_9PROT (Propionyl-CoA carboxylase alpha chain, mitochondrial (Fragment) n=3 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7TW49_9PROT)

HSP 1 Score: 104 bits (260), Expect = 7.930e-24
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    7 PLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALDG 318
            P  QP V   G AIEAR+YAEDP R FLPS G LV Y  PE                G G+RVDAGV EG+ +S+YYDPMI+KLIA+G+ R+ A++RL  ALDG
Sbjct:  198 PFAQPDVRQNGWAIEARIYAEDPTRNFLPSIGRLVRYCPPE----------------GEGIRVDAGVFEGAEISLYYDPMIAKLIAYGKDRDAAIERLGDALDG 285          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A6N7A2Y8_9PROT (Propionyl-CoA carboxylase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N7A2Y8_9PROT)

HSP 1 Score: 103 bits (257), Expect = 2.520e-23
Identity = 55/103 (53.40%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    7 PLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
            P  Q  V  QG A+EAR+YAEDPFR FLPSTG LV YREPE                G  VRVD GV EG  +S++YDPMI+KL  HG TR+ A+ R+  ALD
Sbjct:  358 PFQQKDVKLQGWAVEARLYAEDPFRNFLPSTGRLVKYREPEA---------------GPDVRVDTGVFEGGEISMFYDPMIAKLCTHGHTRDEAIDRMRRALD 445          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A1E4JBJ7_9SPHN (Propionyl-CoA carboxylase n=1 Tax=Sphingomonas sp. SCN 67-18 TaxID=1660141 RepID=A0A1E4JBJ7_9SPHN)

HSP 1 Score: 103 bits (256), Expect = 3.410e-23
Identity = 63/109 (57.80%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   10 LIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALDG-ELESL 333
            + Q  V   G AIE RVYAEDP+R FLPSTG LV YR P          GDE G GG  VRVDAGV EG  VSI+YDPMI+KL+  GETR+ A  R   ALD  ELE L
Sbjct:  327 MRQDDVKIDGWAIENRVYAEDPYRGFLPSTGRLVRYRTPAPAW-----AGDERGEGG--VRVDAGVAEGGEVSIFYDPMIAKLVTWGETRDEAADRQIAALDRFELEGL 428          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A4R3J810_9PROT (Biotin carboxylase n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J810_9PROT)

HSP 1 Score: 103 bits (256), Expect = 3.450e-23
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 PSPLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
            P  ++Q ++  +G AIE R+YAEDPFR FLPS G LV YR P          G+E     GGVRVD+GV EG  +SI+YDPMI+KLI +GETR +A+ R+ +ALD
Sbjct:  356 PLGIVQKNIRPKGWAIETRIYAEDPFRGFLPSVGRLVRYRAP----------GEE-----GGVRVDSGVYEGGEISIHYDPMIAKLITYGETRALAIARMRLALD 445          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A7S2G2Z4_9STRA (Propionyl-CoA carboxylase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Z4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.900e-23
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   34 QGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
            +G A+EARVYAEDPFR FLPSTGSL+ YREPE C   +L +          VRVD+GV EG+ +S YYDPMISKL+ HG TR+  + R++ AL+
Sbjct:  146 KGWALEARVYAEDPFRGFLPSTGSLLDYREPEGCTAFNLESN---------VRVDSGVREGTEISTYYDPMISKLVTHGATRDECIDRMSDALN 230          
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: UPI001657981E (acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas sp. JC676 TaxID=2768065 RepID=UPI001657981E)

HSP 1 Score: 102 bits (254), Expect = 6.340e-23
Identity = 57/103 (55.34%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    7 PLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
            PL Q  V   G AIE RVYAEDP+R FLPSTG LV YR P                   GVRVD GVVEGS +S++YDPMI+KLI HG TRE A+ R  +ALD
Sbjct:  326 PLTQDEVKINGWAIENRVYAEDPYRGFLPSTGRLVRYRPPSAED---------------GVRVDDGVVEGSEISMFYDPMIAKLITHGATREEAIDRQIVALD 413          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G756_ECTSI1.080e-3370.19Propionyl-CoA carboxylase, alpha subunit n=2 Tax=E... [more]
A0A835ZB92_9STRA4.480e-2552.48Propionyl-CoA carboxylase n=1 Tax=Tribonema minus ... [more]
W7TIZ8_9STRA2.140e-2451.69Propionyl-CoA carboxylase n=2 Tax=Monodopsidaceae ... [more]
A0A2E4NDX0_9PROT7.150e-2456.44Propionyl-CoA carboxylase n=1 Tax=Rhodospirillacea... [more]
A0A1Q7TW49_9PROT7.930e-2453.85Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A6N7A2Y8_9PROT2.520e-2353.40Propionyl-CoA carboxylase n=3 Tax=Alphaproteobacte... [more]
A0A1E4JBJ7_9SPHN3.410e-2357.80Propionyl-CoA carboxylase n=1 Tax=Sphingomonas sp.... [more]
A0A4R3J810_9PROT3.450e-2352.38Biotin carboxylase n=1 Tax=Varunaivibrio sulfuroxi... [more]
A0A7S2G2Z4_9STRA3.900e-2356.38Propionyl-CoA carboxylase n=1 Tax=Florenciella par... [more]
UPI001657981E6.340e-2355.34acetyl/propionyl/methylcrotonyl-CoA carboxylase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43331contigH-paniculata_contig43331:1280..1639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D7G756
KEGG rclassRC00064,RC00090,RC00097,RC00367,RC00609,RC00942
KEGG koko:K01965,ko:K01968,ko:K14755
KEGG ReactionR00910,R00912,R01164,R01859,R01991,R03286,R04138
KEGG Pathwayko00280,ko00330,ko00340,ko00410,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00330,map00340,map00410,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CoA carboxylase activity
EggNOG OGsCOG4770@1,KOG0238@2759
Ec32 ortholog descriptionpropionyl-CoA carboxylase, alpha subunit
Ec32 orthologEc-01_010970.1
EC6.3.2.11,6.4.1.3,6.4.1.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930316.0783055-CDS-H-paniculata_contig43331:1279..16391622930316.0783055-CDS-H-paniculata_contig43331:1279..1639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43331 1280..1639 +
1691481238.4798326-CDS-H-paniculata_contig43331:1279..16391691481238.4798326-CDS-H-paniculata_contig43331:1279..1639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43331 1280..1639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43331.11050.1prot_H-paniculata_contig43331.11050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43331 1280..1639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43331.11050.1

>prot_H-paniculata_contig43331.11050.1 ID=prot_H-paniculata_contig43331.11050.1|Name=mRNA_H-paniculata_contig43331.11050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
PSPLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSL
PTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRL
AMALDGELESLCFFLVCGE*
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mRNA from alignment at H-paniculata_contig43331:1280..1639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43331.11050.1 ID=mRNA_H-paniculata_contig43331.11050.1|Name=mRNA_H-paniculata_contig43331.11050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig43331:1280..1639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCCCCCCTCATTCAGCCGCACGTGTCGTATCAAGGACACGCCATCGA AGCACGCGTATATGCTGAAGATCCTTTCCGGAAATTTCTTCCGTCGACTG GTTCGCTCGTCACTTACCGCGAGCCCGAGACCTGTCACTTCCCGTCGCTC CCCACCGGCGACGAAGCGGGAGGGGGCGGCGGGGGCGTGAGGGTCGACGC CGGCGTGGTCGAAGGGTCGGCGGTGTCTATCTACTACGACCCCATGATCA GCAAGCTTATCGCGCACGGAGAGACGCGGGAGGTGGCGCTGAAGCGCCTC GCGATGGCTCTCGACGGTGAGTTAGAGTCTCTCTGTTTTTTTCTTGTTTG TGGTGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig43331:1280..1639+

>mRNA_H-paniculata_contig43331.11050.1 ID=mRNA_H-paniculata_contig43331.11050.1|Name=mRNA_H-paniculata_contig43331.11050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig43331:1280..1639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCCCCCCTCATTCAGCCGCACGTGTCGTATCAAGGACACGCCATCGA
AGCACGCGTATATGCTGAAGATCCTTTCCGGAAATTTCTTCCGTCGACTG
GTTCGCTCGTCACTTACCGCGAGCCCGAGACCTGTCACTTCCCGTCGCTC
CCCACCGGCGACGAAGCGGGAGGGGGCGGCGGGGGCGTGAGGGTCGACGC
CGGCGTGGTCGAAGGGTCGGCGGTGTCTATCTACTACGACCCCATGATCA
GCAAGCTTATCGCGCACGGAGAGACGCGGGAGGTGGCGCTGAAGCGCCTC
GCGATGGCTCTCGACGGTGAGTTAGAGTCTCTCTGTTTTTTTCTTGTTTG
TGGTGAGTGACCCTCCCCCCTCATTCAGCCGCACGTGTCGTATCAAGGAC
ACGCCATCGAAGCACGCGTATATGCTGAAGATCCTTTCCGGAAATTTCTT
CCGTCGACTGGTTCGCTCGTCACTTACCGCGAGCCCGAGACCTGTCACTT
CCCGTCGCTCCCCACCGGCGACGAAGCGGGAGGGGGCGGCGGGGGCGTGA
GGGTCGACGCCGGCGTGGTCGAAGGGTCGGCGGTGTCTATCTACTACGAC
CCCATGATCAGCAAGCTTATCGCGCACGGAGAGACGCGGGAGGTGGCGCT
GAAGCGCCTCGCGATGGCTCTCGACGGTGAGTTAGAGTCTCTCTGTTTTT
TTCTTGTTTGTGGTGAGTGA
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