mRNA_H-paniculata_contig43331.11050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: D7G756_ECTSI (Propionyl-CoA carboxylase, alpha subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G756_ECTSI) HSP 1 Score: 132 bits (332), Expect = 1.080e-33 Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 1
Query: 10 LIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGG--GGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
+ QPHV + HAIEARVYAEDPFRKFLPSTG LVTYREP GD GG G GVRVD+GVVEGS VS++YDPMISKLIA+GETREVAL RL ALD
Sbjct: 378 IKQPHVPFYRHAIEARVYAEDPFRKFLPSTGPLVTYREPRVTADGD--GGDAEGGXXGADGVRVDSGVVEGSEVSMFYDPMISKLIAYGETREVALGRLGSALD 479
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A835ZB92_9STRA (Propionyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB92_9STRA) HSP 1 Score: 108 bits (270), Expect = 4.480e-25 Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1
Query: 13 IQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
I PHV ++GHAIEARVYAEDPFR F+PSTG L+ Y+EP P + +E+ +R+D GV EGSA++++YDP+ISKLI +G R +L + MALD
Sbjct: 364 IGPHVPFKGHAIEARVYAEDPFRNFMPSTGPLIRYQEPHAAFIPDGDSPEESYKRP--IRIDTGVDEGSAINMFYDPLISKLITYGADRRESLANMCMALD 462
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: W7TIZ8_9STRA (Propionyl-CoA carboxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIZ8_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.140e-24 Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 1 PSPLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD-----GELESLCF 339
P L V ++G A+EARVYAEDP R FLPSTG L+TYREP H + E GG VR+D GV EGS +S++YDPMI+KL+++G TR AL+RL ALD G +LCF
Sbjct: 392 PGRLTAQPVPFKGWAMEARVYAEDPLRGFLPSTGHLITYREPR--HLMEM----EVEGGVPAVRIDTGVYEGSEISMFYDPMIAKLVSYGSTRAEALERLNEALDAYVIQGLSHNLCF 503
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A2E4NDX0_9PROT (Propionyl-CoA carboxylase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4NDX0_9PROT) HSP 1 Score: 105 bits (261), Expect = 7.150e-24 Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 16 QPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALDG 318
Q ++++G AIEAR+YAEDP R FLPSTG LV YREP+ D+ G VR+D+GVVEGS +S++YDPMI+KLIA G TRE A++RLA AL G
Sbjct: 325 QSEIAFRGWAIEARLYAEDPARGFLPSTGRLVRYREPQ----------DKTG-----VRIDSGVVEGSEISVFYDPMIAKLIASGTTRERAVERLASALGG 410
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A1Q7TW49_9PROT (Propionyl-CoA carboxylase alpha chain, mitochondrial (Fragment) n=3 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7TW49_9PROT) HSP 1 Score: 104 bits (260), Expect = 7.930e-24 Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 7 PLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALDG 318
P QP V G AIEAR+YAEDP R FLPS G LV Y PE G G+RVDAGV EG+ +S+YYDPMI+KLIA+G+ R+ A++RL ALDG
Sbjct: 198 PFAQPDVRQNGWAIEARIYAEDPTRNFLPSIGRLVRYCPPE----------------GEGIRVDAGVFEGAEISLYYDPMIAKLIAYGKDRDAAIERLGDALDG 285
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A6N7A2Y8_9PROT (Propionyl-CoA carboxylase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N7A2Y8_9PROT) HSP 1 Score: 103 bits (257), Expect = 2.520e-23 Identity = 55/103 (53.40%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 7 PLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
P Q V QG A+EAR+YAEDPFR FLPSTG LV YREPE G VRVD GV EG +S++YDPMI+KL HG TR+ A+ R+ ALD
Sbjct: 358 PFQQKDVKLQGWAVEARLYAEDPFRNFLPSTGRLVKYREPEA---------------GPDVRVDTGVFEGGEISMFYDPMIAKLCTHGHTRDEAIDRMRRALD 445
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A1E4JBJ7_9SPHN (Propionyl-CoA carboxylase n=1 Tax=Sphingomonas sp. SCN 67-18 TaxID=1660141 RepID=A0A1E4JBJ7_9SPHN) HSP 1 Score: 103 bits (256), Expect = 3.410e-23 Identity = 63/109 (57.80%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 10 LIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALDG-ELESL 333
+ Q V G AIE RVYAEDP+R FLPSTG LV YR P GDE G GG VRVDAGV EG VSI+YDPMI+KL+ GETR+ A R ALD ELE L
Sbjct: 327 MRQDDVKIDGWAIENRVYAEDPYRGFLPSTGRLVRYRTPAPAW-----AGDERGEGG--VRVDAGVAEGGEVSIFYDPMIAKLVTWGETRDEAADRQIAALDRFELEGL 428
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A4R3J810_9PROT (Biotin carboxylase n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J810_9PROT) HSP 1 Score: 103 bits (256), Expect = 3.450e-23 Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 1 PSPLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
P ++Q ++ +G AIE R+YAEDPFR FLPS G LV YR P G+E GGVRVD+GV EG +SI+YDPMI+KLI +GETR +A+ R+ +ALD
Sbjct: 356 PLGIVQKNIRPKGWAIETRIYAEDPFRGFLPSVGRLVRYRAP----------GEE-----GGVRVDSGVYEGGEISIHYDPMIAKLITYGETRALAIARMRLALD 445
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: A0A7S2G2Z4_9STRA (Propionyl-CoA carboxylase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Z4_9STRA) HSP 1 Score: 102 bits (255), Expect = 3.900e-23 Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1
Query: 34 QGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
+G A+EARVYAEDPFR FLPSTGSL+ YREPE C +L + VRVD+GV EG+ +S YYDPMISKL+ HG TR+ + R++ AL+
Sbjct: 146 KGWALEARVYAEDPFRGFLPSTGSLLDYREPEGCTAFNLESN---------VRVDSGVREGTEISTYYDPMISKLVTHGATRDECIDRMSDALN 230
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Match: UPI001657981E (acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas sp. JC676 TaxID=2768065 RepID=UPI001657981E) HSP 1 Score: 102 bits (254), Expect = 6.340e-23 Identity = 57/103 (55.34%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 7 PLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLPTGDEAGGGGGGVRVDAGVVEGSAVSIYYDPMISKLIAHGETREVALKRLAMALD 315
PL Q V G AIE RVYAEDP+R FLPSTG LV YR P GVRVD GVVEGS +S++YDPMI+KLI HG TRE A+ R +ALD
Sbjct: 326 PLTQDEVKINGWAIENRVYAEDPYRGFLPSTGRLVRYRPPSAED---------------GVRVDDGVVEGSEISMFYDPMIAKLITHGATREEAIDRQIVALD 413 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43331.11050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43331.11050.1 >prot_H-paniculata_contig43331.11050.1 ID=prot_H-paniculata_contig43331.11050.1|Name=mRNA_H-paniculata_contig43331.11050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp PSPLIQPHVSYQGHAIEARVYAEDPFRKFLPSTGSLVTYREPETCHFPSLback to top mRNA from alignment at H-paniculata_contig43331:1280..1639+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43331.11050.1 ID=mRNA_H-paniculata_contig43331.11050.1|Name=mRNA_H-paniculata_contig43331.11050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig43331:1280..1639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43331:1280..1639+ >mRNA_H-paniculata_contig43331.11050.1 ID=mRNA_H-paniculata_contig43331.11050.1|Name=mRNA_H-paniculata_contig43331.11050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig43331:1280..1639+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |