mRNA_H-paniculata_contig43274.11039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: UPI0007382E13 (uncharacterized protein LOC107046765 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007382E13) HSP 1 Score: 92.0 bits (227), Expect = 9.020e-17 Identity = 66/219 (30.14%), Postives = 106/219 (48.40%), Query Frame = 1
Query: 217 SKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTGKEVKGLRLFSKDCTTPKNNEKRQQVVDTKLLRERLGHV-RDFPTVARQ---QGTRLSGK--LGVCSACEKGKASKQPVKKVSRRANDRAALWALKQFERDVARANGLRIKRLRSDQGGEY 855
S ++ W++DSG A H++PQR++F+NFRQ IVTA E L+ +G GD+E + ++ +V+YVP A+ ++LS+ +Q + AK E G+ D + + D L RLGH+ R + + + G + + C C KGK ++P + RR+ LK+F R G ++K LR+D G EY
Sbjct: 292 SITNADWVIDSG-ASSHISPQREVFRNFRQQAAVGIVTADETVLEADGIGDIEVPVCMNGEPTTLLVRDVLYVPRAATNLLSINNNDNQVIAIAK-----ETCGIYKLDVDRQIVYHVSQSTTTDDGILWHRRLGHLNRGYMKLLKNVLATGVEYDERTIINPCDDCVKGKQHREPFQPSHRRSRKNQVAKKLKEFIGFYERQTGEKVKTLRTDNGTEY 504
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A6A2ZTQ6_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZTQ6_HIBSY) HSP 1 Score: 82.4 bits (202), Expect = 1.590e-13 Identity = 88/333 (26.43%), Postives = 139/333 (41.74%), Query Frame = 1
Query: 7 CWNCGKHGHGQWECRE-KRKGKRLGGKRYGTSEYVGYAK-DHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTGKEVKGLRLFSKDCTTPKNNEKRQQV--------VDTKLLRERLGHVRDFPTVARQQGTRLSGKLGVCSACEKGKASKQPVKKVSRRANDRAALWALK---------QFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMASSRSSLPPTHCNKTVWRS 948
C C + GH + EC + K KGK GK S V Y D + A A P S+ W++DS C+ HH+TP R+ F +F+++ + TA LD G G + + +G+IR + V YVP+ +++SVG + S+ ++ +D +R+ S K KR V V T + T +R + KL C C KGK ++ VK + + + ++ +K ++++ + G +IKRLR+D GGEY PF C E R H N+ R+
Sbjct: 178 CAFCREKGHWKKECPKLKNKGKPERGKAVSESNVVEYDDGDSDFAF-----------------AATP----STSCSSSWLLDSACS-HHMTPNREWFFDFKELKGGIVYTANNSPLDTLGIGSIR--LRNQDGSIRTL-TGVHYVPDLMRNLISVGTLESKGLEVRAKDGI-----MRIISGALVIMKGIRKRNNVYYFLGSTIVGTAAVAASTDEQESEATRSRIIEGARACKLAFCEHCIKGKKTR--VKFGTAIHDTKVWVYPMKTKEVLGFFLKWKKMMETQTGRKIKRLRTDNGGEYKNDPFLKVCEEEGIVRHFTVRVHHNRMECRA 478
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A7N2R487_QUELO (CCHC-type domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2R487_QUELO) HSP 1 Score: 76.3 bits (186), Expect = 1.960e-11 Identity = 89/353 (25.21%), Postives = 134/353 (37.96%), Query Frame = 1
Query: 1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFS---KDCTTPKNNEKRQQV------VDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAA------LWA-------------LKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMA-SSRSSLPPT 921
++CWNCGK GH + +C+ +K K S + H+ L V LD W++DSG A H TP R++ QN+ + A LDV G GDV G +W E + ++P+ +++SVG++ + T K KG R+ + K T + R + +DT L RLGH+ ++G ++ GKL +C +C GK K K R LW K+++ V GL++K LRSD GGEY F +CA ++P T
Sbjct: 237 VQCWNCGKTGHFRNQCKSPKK------KNEDDSANAVTEEVHDALLLAVDSP-------LDD----------------WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGMGDVRILLPNGSVWLLE--------KIRHIPDLRRNLISVGQLDDEGHAILFIGGTWKVTKGARVLARGKKTSTLYMTSSPRDTIAVADASIDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGDVFETFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPET 544
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438JGD9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JGD9_VITVI) HSP 1 Score: 75.5 bits (184), Expect = 3.010e-11 Identity = 86/333 (25.83%), Postives = 135/333 (40.54%), Query Frame = 1
Query: 1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAA------LW------ALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCA 885
++CWNCGK GH + +C+ +K K+ + + + V + + D + A ++S W++DSG A H TP R++ QN+ + A LDV G GDV G +W E V ++P+ +++SVG++ + T K KG+R+ ++ T P++ DT L RLGH+ ++G ++ GKL +C +C GK K K R LW +L + E V GL++K LRSD GGEY F +CA
Sbjct: 237 VQCWNCGKTGHFKRQCKSPKK------------------KNEDDSANAVTEE------VQDALLLA---VDSPLDD--WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGVRVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGEVEGMVETETGLKVKCLRSDNGGEYIDGGFSEYCA 524
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438H6F1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H6F1_VITVI) HSP 1 Score: 74.7 bits (182), Expect = 6.100e-11 Identity = 85/336 (25.30%), Postives = 135/336 (40.18%), Query Frame = 1
Query: 1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAA------LWA---------LKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCA 885
++CWNCGK GH + +C+ +K K+ + + + V + + D + A ++S W++DSG A H TP R++ QN+ + A LDV G GDV G +W E V ++P+ +++SVG++ + T K KG R+ ++ T P++ DT L RLGH+ ++G ++ GKL +C +C GK K K+ R LW K+++ V GL++K LRSD GGEY F +CA
Sbjct: 191 VQCWNCGKTGHFKRQCKSPKK------------------KNEDDSANAVTEE------VQDALLLA---VDSPLDD--WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKIGRTPKAEKLELVHTDLWGPSPVASPRRFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCA 481
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A5C6L3_VITVI (CCHC-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C6L3_VITVI) HSP 1 Score: 73.9 bits (180), Expect = 1.100e-10 Identity = 87/348 (25.00%), Postives = 140/348 (40.23%), Query Frame = 1
Query: 1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKLGVCSACEKGKASKQPVKKVSRRA-------NDRAALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMASSR--SSLPPTHCNKTVWRSAAGAA 963
++CWNCGK GH + +C+ +K K+ + + + V + + D + A ++S W++DSG A H TP R++ QN+ + A LDV G GDV G +W E V ++P+ +++SVG++ + T K KG R+ ++ T P++ DT L RLGH+ ++G ++ GKL + + K ++K +R N K+++ V GL++K LRSD GGEY F+ S R + LP KT W A A
Sbjct: 237 VQCWNCGKTGHFKRQCKSPKK------------------KNEDDSANAVTEE------VQDALLLA---VDSPLDD--WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLXRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCEKLHLRKAKKRKVWVYFLKNKSDVFVTFKKWKVMVETETGLKVKCLRSDNGGEYIDGGFQTLNERARSMRLHAGLP-----KTFWADAVSTA 534
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438GZ19_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GZ19_VITVI) HSP 1 Score: 73.2 bits (178), Expect = 1.720e-10 Identity = 91/369 (24.66%), Postives = 141/369 (38.21%), Query Frame = 1
Query: 1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQP---------------VKKVSRRA------NDRAALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMA-SSRSSLPPT--------HCNKTV 939
++CWNCGK GH + +C+ +K K S V + + L + LD W++DSG A H TP R++ QN+ + A LDV G GDV+ G +W E V ++P+ +++SVG++ + T K KG R+ ++ T P++ DT L RLGH+ ++G ++ GKL +C +C GK K P + SR+ N K+++ V GL++K LRSD GGEY F +CA ++P T H N+T+
Sbjct: 237 VQCWNCGKTGHFKRQCKSPKK------KNEDDSANVVTKEVQDALLLAIDNP-------LDD----------------WVLDSG-ASFHTTPHREIIQNYVTGDFGKVYLADGSALDVVGLGDVQISLPNGSVWLLE--------KVRHIPDLKRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVANASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDICESCILGKQKKGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFATFKKWKVMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAEHMNRTL 560
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438D4U2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D4U2_VITVI) HSP 1 Score: 72.4 bits (176), Expect = 3.220e-10 Identity = 80/329 (24.32%), Postives = 124/329 (37.69%), Query Frame = 1
Query: 1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRLSGKLGVCSACEKGKASKQPVKKVSRRANDRAALW------ALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FC-AEMASSRSSLPPT 921
++CWNCGK GH + +C+ +R+R M +L+ + W++DSG A H TP R++ QN+ + A LDV G GDV G +W E V ++P+ +++SVG++ + T K KG R+ ++ T P++ DT L RLGH+ + G+ KGK + K + LW +L + E V GL++K LRSD GGEY F +C A+ ++P T
Sbjct: 47 VQCWNCGKTGHFKRQCKS------------------------------LRRRMKMILLMLNRRGTDALLLAVDSPLDDWVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHMSE---------------KGMKMLLSKGKLPELKTPKAEKLELVHTDLWGPSPVASLGEVEGMVETETGLKVKCLRSDNGGEYIDGGFSEYCVAQGIRMEKTIPGT 321
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438CW59_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CW59_VITVI) HSP 1 Score: 72.0 bits (175), Expect = 4.720e-10 Identity = 68/278 (24.46%), Postives = 123/278 (44.24%), Query Frame = 1
Query: 199 PRWMESSKSHVH-------WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTG-KEVKGLRLFSKDCTTPKNNEKRQQVVDT-----------KLLRERLGHVRDFPTVARQQGTRL----SGKLGVCSACEKGKASKQPVKKV--SRRANDRAA-LWA------------LKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMASSRSSLPP 918
P+ + SKS + W++DSG A H TPQ+D F ++ + +G G GDV + T+ G + + NV ++P+ +++S G++ + RD+ K +G + +K + + +V+D+ +L +LGH+ + + + L G L C+ C GK ++ K + +R+ +D + +W KQF V R +G ++K +R+D GGEY+G PF +C + PP
Sbjct: 189 PKNRDRSKSKTNKFANESSWVIDSG-ASIHATPQKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVR--LETSNGTM-LTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNKLGHMSEKGLMILAKKNLLFGMKKGSLKRCAHCLAGKQTRVAFKTLHHTRKPDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSG-PFDEYCRQHGFRHQKTPP 461
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438EKF6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EKF6_VITVI) HSP 1 Score: 71.6 bits (174), Expect = 6.240e-10 Identity = 80/321 (24.92%), Postives = 129/321 (40.19%), Query Frame = 1
Query: 1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCA 885
++CWNCGK GH + +C+ +K K+ + + + V + + D + A ++S W++DSG A H TP R++ QN+ + A LDV G GDV G +W E V ++P+ +++SVG++ + T K KG R+ ++ T P++ DT L RLGH+ ++G ++ GKL +C +C GK K+ ++ V GL++K LRSD GGEY F +CA
Sbjct: 83 VQCWNCGKTGHFKRQCKSPKK------------------KNEDDSANAVTEE------VQDALLLA---VDSPLDD--WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKK--------------------WKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCA 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43274.11039.1 >prot_H-paniculata_contig43274.11039.1 ID=prot_H-paniculata_contig43274.11039.1|Name=mRNA_H-paniculata_contig43274.11039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp MPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVback to top mRNA from alignment at H-paniculata_contig43274:295..1572+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43274.11039.1 ID=mRNA_H-paniculata_contig43274.11039.1|Name=mRNA_H-paniculata_contig43274.11039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig43274:295..1572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43274:295..1572+ >mRNA_H-paniculata_contig43274.11039.1 ID=mRNA_H-paniculata_contig43274.11039.1|Name=mRNA_H-paniculata_contig43274.11039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig43274:295..1572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |