mRNA_H-paniculata_contig43274.11039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43274.11039.1
Unique NamemRNA_H-paniculata_contig43274.11039.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: UPI0007382E13 (uncharacterized protein LOC107046765 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007382E13)

HSP 1 Score: 92.0 bits (227), Expect = 9.020e-17
Identity = 66/219 (30.14%), Postives = 106/219 (48.40%), Query Frame = 1
Query:  217 SKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTGKEVKGLRLFSKDCTTPKNNEKRQQVVDTKLLRERLGHV-RDFPTVARQ---QGTRLSGK--LGVCSACEKGKASKQPVKKVSRRANDRAALWALKQFERDVARANGLRIKRLRSDQGGEY 855
            S ++  W++DSG A  H++PQR++F+NFRQ     IVTA E  L+ +G GD+E  +        ++  +V+YVP A+ ++LS+    +Q +  AK     E  G+     D     +  +     D  L   RLGH+ R +  + +     G     +  +  C  C KGK  ++P +   RR+        LK+F     R  G ++K LR+D G EY
Sbjct:  292 SITNADWVIDSG-ASSHISPQREVFRNFRQQAAVGIVTADETVLEADGIGDIEVPVCMNGEPTTLLVRDVLYVPRAATNLLSINNNDNQVIAIAK-----ETCGIYKLDVDRQIVYHVSQSTTTDDGILWHRRLGHLNRGYMKLLKNVLATGVEYDERTIINPCDDCVKGKQHREPFQPSHRRSRKNQVAKKLKEFIGFYERQTGEKVKTLRTDNGTEY 504          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A6A2ZTQ6_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZTQ6_HIBSY)

HSP 1 Score: 82.4 bits (202), Expect = 1.590e-13
Identity = 88/333 (26.43%), Postives = 139/333 (41.74%), Query Frame = 1
Query:    7 CWNCGKHGHGQWECRE-KRKGKRLGGKRYGTSEYVGYAK-DHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTGKEVKGLRLFSKDCTTPKNNEKRQQV--------VDTKLLRERLGHVRDFPTVARQQGTRLSGKLGVCSACEKGKASKQPVKKVSRRANDRAALWALK---------QFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMASSRSSLPPTHCNKTVWRS 948
            C  C + GH + EC + K KGK   GK    S  V Y   D + A                  A  P    S+     W++DS C+ HH+TP R+ F +F+++    + TA    LD  G G +   +   +G+IR +   V YVP+   +++SVG + S+ ++   +D       +R+ S      K   KR  V        V T  +           T +R      + KL  C  C KGK ++  VK  +   + +  ++ +K         ++++ +    G +IKRLR+D GGEY   PF   C E    R      H N+   R+
Sbjct:  178 CAFCREKGHWKKECPKLKNKGKPERGKAVSESNVVEYDDGDSDFAF-----------------AATP----STSCSSSWLLDSACS-HHMTPNREWFFDFKELKGGIVYTANNSPLDTLGIGSIR--LRNQDGSIRTL-TGVHYVPDLMRNLISVGTLESKGLEVRAKDGI-----MRIISGALVIMKGIRKRNNVYYFLGSTIVGTAAVAASTDEQESEATRSRIIEGARACKLAFCEHCIKGKKTR--VKFGTAIHDTKVWVYPMKTKEVLGFFLKWKKMMETQTGRKIKRLRTDNGGEYKNDPFLKVCEEEGIVRHFTVRVHHNRMECRA 478          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A7N2R487_QUELO (CCHC-type domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2R487_QUELO)

HSP 1 Score: 76.3 bits (186), Expect = 1.960e-11
Identity = 89/353 (25.21%), Postives = 134/353 (37.96%), Query Frame = 1
Query:    1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFS---KDCTTPKNNEKRQQV------VDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAA------LWA-------------LKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMA-SSRSSLPPT 921
            ++CWNCGK GH + +C+  +K      K    S      + H+  L  V          LD                 W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         + ++P+   +++SVG++  +         T K  KG R+ +   K  T    +  R  +      +DT L   RLGH+        ++G ++    GKL         +C +C  GK  K    K  R             LW               K+++  V    GL++K LRSD GGEY    F  +CA        ++P T
Sbjct:  237 VQCWNCGKTGHFRNQCKSPKK------KNEDDSANAVTEEVHDALLLAVDSP-------LDD----------------WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGMGDVRILLPNGSVWLLE--------KIRHIPDLRRNLISVGQLDDEGHAILFIGGTWKVTKGARVLARGKKTSTLYMTSSPRDTIAVADASIDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGDVFETFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPET 544          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438JGD9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JGD9_VITVI)

HSP 1 Score: 75.5 bits (184), Expect = 3.010e-11
Identity = 86/333 (25.83%), Postives = 135/333 (40.54%), Query Frame = 1
Query:    1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAA------LW------ALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCA 885
            ++CWNCGK GH + +C+  +K                  K+ + + + V +       + D +  A   ++S      W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG+R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL         +C +C  GK  K    K  R             LW      +L + E  V    GL++K LRSD GGEY    F  +CA
Sbjct:  237 VQCWNCGKTGHFKRQCKSPKK------------------KNEDDSANAVTEE------VQDALLLA---VDSPLDD--WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGVRVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGEVEGMVETETGLKVKCLRSDNGGEYIDGGFSEYCA 524          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438H6F1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H6F1_VITVI)

HSP 1 Score: 74.7 bits (182), Expect = 6.100e-11
Identity = 85/336 (25.30%), Postives = 135/336 (40.18%), Query Frame = 1
Query:    1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAA------LWA---------LKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCA 885
            ++CWNCGK GH + +C+  +K                  K+ + + + V +       + D +  A   ++S      W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL         +C +C  GK  K    K+ R             LW           K+++  V    GL++K LRSD GGEY    F  +CA
Sbjct:  191 VQCWNCGKTGHFKRQCKSPKK------------------KNEDDSANAVTEE------VQDALLLA---VDSPLDD--WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKIGRTPKAEKLELVHTDLWGPSPVASPRRFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCA 481          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A5C6L3_VITVI (CCHC-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C6L3_VITVI)

HSP 1 Score: 73.9 bits (180), Expect = 1.100e-10
Identity = 87/348 (25.00%), Postives = 140/348 (40.23%), Query Frame = 1
Query:    1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKLGVCSACEKGKASKQPVKKVSRRA-------NDRAALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMASSR--SSLPPTHCNKTVWRSAAGAA 963
            ++CWNCGK GH + +C+  +K                  K+ + + + V +       + D +  A   ++S      W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL    + +     K  ++K  +R        N        K+++  V    GL++K LRSD GGEY    F+       S R  + LP     KT W  A   A
Sbjct:  237 VQCWNCGKTGHFKRQCKSPKK------------------KNEDDSANAVTEE------VQDALLLA---VDSPLDD--WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLXRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCEKLHLRKAKKRKVWVYFLKNKSDVFVTFKKWKVMVETETGLKVKCLRSDNGGEYIDGGFQTLNERARSMRLHAGLP-----KTFWADAVSTA 534          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438GZ19_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GZ19_VITVI)

HSP 1 Score: 73.2 bits (178), Expect = 1.720e-10
Identity = 91/369 (24.66%), Postives = 141/369 (38.21%), Query Frame = 1
Query:    1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQP---------------VKKVSRRA------NDRAALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMA-SSRSSLPPT--------HCNKTV 939
            ++CWNCGK GH + +C+  +K      K    S  V   +  +  L  +          LD                 W++DSG A  H TP R++ QN+       +  A    LDV G GDV+     G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL         +C +C  GK  K P               +   SR+       N        K+++  V    GL++K LRSD GGEY    F  +CA        ++P T        H N+T+
Sbjct:  237 VQCWNCGKTGHFKRQCKSPKK------KNEDDSANVVTKEVQDALLLAIDNP-------LDD----------------WVLDSG-ASFHTTPHREIIQNYVTGDFGKVYLADGSALDVVGLGDVQISLPNGSVWLLE--------KVRHIPDLKRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVANASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDICESCILGKQKKGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFATFKKWKVMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAEHMNRTL 560          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438D4U2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D4U2_VITVI)

HSP 1 Score: 72.4 bits (176), Expect = 3.220e-10
Identity = 80/329 (24.32%), Postives = 124/329 (37.69%), Query Frame = 1
Query:    1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRLSGKLGVCSACEKGKASKQPVKKVSRRANDRAALW------ALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FC-AEMASSRSSLPPT 921
            ++CWNCGK GH + +C+                               +R+R  M   +L+        +        W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+ +                G+     KGK  +    K  +       LW      +L + E  V    GL++K LRSD GGEY    F  +C A+      ++P T
Sbjct:   47 VQCWNCGKTGHFKRQCKS------------------------------LRRRMKMILLMLNRRGTDALLLAVDSPLDDWVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHMSE---------------KGMKMLLSKGKLPELKTPKAEKLELVHTDLWGPSPVASLGEVEGMVETETGLKVKCLRSDNGGEYIDGGFSEYCVAQGIRMEKTIPGT 321          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438CW59_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CW59_VITVI)

HSP 1 Score: 72.0 bits (175), Expect = 4.720e-10
Identity = 68/278 (24.46%), Postives = 123/278 (44.24%), Query Frame = 1
Query:  199 PRWMESSKSHVH-------WIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQRVQAAKRDTG-KEVKGLRLFSKDCTTPKNNEKRQQVVDT-----------KLLRERLGHVRDFPTVARQQGTRL----SGKLGVCSACEKGKASKQPVKKV--SRRANDRAA-LWA------------LKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCAEMASSRSSLPP 918
            P+  + SKS  +       W++DSG A  H TPQ+D F ++       +    +G     G GDV   + T+ G + +   NV ++P+   +++S G++  +      RD+  K  +G  + +K   +      + +V+D+           +L   +LGH+ +   +   +   L     G L  C+ C  GK ++   K +  +R+ +D +  +W              KQF   V R +G ++K +R+D GGEY+G PF  +C +        PP
Sbjct:  189 PKNRDRSKSKTNKFANESSWVIDSG-ASIHATPQKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVR--LETSNGTM-LTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNKLGHMSEKGLMILAKKNLLFGMKKGSLKRCAHCLAGKQTRVAFKTLHHTRKPDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSG-PFDEYCRQHGFRHQKTPP 461          
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Match: A0A438EKF6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EKF6_VITVI)

HSP 1 Score: 71.6 bits (174), Expect = 6.240e-10
Identity = 80/321 (24.92%), Postives = 129/321 (40.19%), Query Frame = 1
Query:    1 IRCWNCGKHGHGQWECREKRKGKRLGGKRYGTSEYVGYAKDHNVALHPVRQRHFMPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVVRSPIVTAGEGELDVEGQGDVE-----GLIWTAEGAIRIIFCNVVYVPEASDSILSVGRMVSQ-RVQAAKRDTGKEVKGLRLFSKDCTT--------PKNN-EKRQQVVDTKLLRERLGHVRDFPTVARQQGTRL---SGKL--------GVCSACEKGKASKQPVKKVSRRANDRAALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*FCA 885
            ++CWNCGK GH + +C+  +K                  K+ + + + V +       + D +  A   ++S      W++DSG A  H TP R++ QN+       +  A    LDV G GDV      G +W  E         V ++P+   +++SVG++  +         T K  KG R+ ++   T        P++         DT L   RLGH+        ++G ++    GKL         +C +C  GK  K+                    ++  V    GL++K LRSD GGEY    F  +CA
Sbjct:   83 VQCWNCGKTGHFKRQCKSPKK------------------KNEDDSANAVTEE------VQDALLLA---VDSPLDD--WVLDSG-ASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE--------KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM-------SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKK--------------------WKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCA 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43274.11039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0007382E139.020e-1730.14uncharacterized protein LOC107046765 n=1 Tax=Diach... [more]
A0A6A2ZTQ6_HIBSY1.590e-1326.43Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A7N2R487_QUELO1.960e-1125.21CCHC-type domain-containing protein n=1 Tax=Quercu... [more]
A0A438JGD9_VITVI3.010e-1125.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A438H6F1_VITVI6.100e-1125.30Retrovirus-related Pol polyprotein from transposon... [more]
A5C6L3_VITVI1.100e-1025.00CCHC-type domain-containing protein n=1 Tax=Vitis ... [more]
A0A438GZ19_VITVI1.720e-1024.66Retrovirus-related Pol polyprotein from transposon... [more]
A0A438D4U2_VITVI3.220e-1024.32Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CW59_VITVI4.720e-1024.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EKF6_VITVI6.240e-1024.92Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43274contigH-paniculata_contig43274:295..1572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue1.3e-06
Seed eggNOG ortholog3641.EOY32548
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons3
Model size1028
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43274.11039.1prot_H-paniculata_contig43274.11039.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43274 457..1420 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930314.3911543-UTR-H-paniculata_contig43274:294..4561622930314.3911543-UTR-H-paniculata_contig43274:294..456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43274 295..456 +
1691481237.6396725-UTR-H-paniculata_contig43274:294..4561691481237.6396725-UTR-H-paniculata_contig43274:294..456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43274 295..456 +
1622930314.4672134-UTR-H-paniculata_contig43274:1420..15721622930314.4672134-UTR-H-paniculata_contig43274:1420..1572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43274 1421..1572 +
1691481237.675983-UTR-H-paniculata_contig43274:1420..15721691481237.675983-UTR-H-paniculata_contig43274:1420..1572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig43274 1421..1572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930314.404225-CDS-H-paniculata_contig43274:456..7801622930314.404225-CDS-H-paniculata_contig43274:456..780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43274 457..780 +
1691481237.649715-CDS-H-paniculata_contig43274:456..7801691481237.649715-CDS-H-paniculata_contig43274:456..780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43274 457..780 +
1622930314.4205253-CDS-H-paniculata_contig43274:900..11761622930314.4205253-CDS-H-paniculata_contig43274:900..1176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43274 901..1176 +
1691481237.658768-CDS-H-paniculata_contig43274:900..11761691481237.658768-CDS-H-paniculata_contig43274:900..1176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43274 901..1176 +
1622930314.4388337-CDS-H-paniculata_contig43274:1306..14201622930314.4388337-CDS-H-paniculata_contig43274:1306..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43274 1307..1420 +
1691481237.667381-CDS-H-paniculata_contig43274:1306..14201691481237.667381-CDS-H-paniculata_contig43274:1306..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43274 1307..1420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43274.11039.1

>prot_H-paniculata_contig43274.11039.1 ID=prot_H-paniculata_contig43274.11039.1|Name=mRNA_H-paniculata_contig43274.11039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MPQWLLDPVACAPRWMESSKSHVHWIVDSGCAGHHLTPQRDLFQNFRQVV
RSPIVTAGEGELDVEGQGDVEGLIWTAEGAIRIIFCNVVYVPEASDSILS
VGRMVSQRVQAAKRDTGKEVKGLRLFSKDCTTPKNNEKRQQVVDTKLLRE
RLGHVRDFPTVARQQGTRLSGKLGVCSACEKGKASKQPVKKVSRRANDRA
ALWALKQFERDVARANGLRIKRLRSDQGGEYTGKPFR*
back to top

mRNA from alignment at H-paniculata_contig43274:295..1572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43274.11039.1 ID=mRNA_H-paniculata_contig43274.11039.1|Name=mRNA_H-paniculata_contig43274.11039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig43274:295..1572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGATGCTGGAATTGCGGCAAGCATGGGCATGGGCAGTGGGAGTGCCG TGAGAAGCGCAAGGGGAAACGACTCGGCGGCAAACGATACGGCACAAGTG AATACGTGGGCTACGCAAAAGATCATAATGTAGCGTTGCACCCAGTTCGC CAACGTCACTTTATGCCCCAATGGTTGCTAGATCCCGTTGCCTGTGCGCC GCGATGGATGGAGTCATCTAAATCGCACGTACACTGGATAGTTGATTCGG GCTGCGCCGGACATCACCTGACCCCGCAACGCGACCTCTTCCAAAATTTT CGCCAGGTCGTACGTAGTCCCATTGTCACAGCGGGCGAGGGGGAGTTGGA TGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAG CCATTCGCATCATCTTCTGCAATGTAGTTTATGTACCTGAAGCATCAGAC AGTATTTTATCGGTTGGGCGGATGGTGAGCCAACGGGTGGAGGCGTATTT TGGTTCGGAACGGAGACGGTTGTATTATAATGGGATAGCGATCTCGTTCG AACACACATCGCGAAAGGAGTATTCATTGCGCATGATAGTGGGGGACGAA GTGGAGGTACAGGCTGCAAAACGGGACACCGGAAAAGAAGTGAAGGGTCT TCGATTATTTAGCAAAGACTGCACCACCCCGAAGAACAATGAGAAGAGGC AACAGGTGGTGGACACCAAGTTACTACGCGAGCGACTTGGGCATGTTCGA GACTTTCCCACAGTCGCGCGGCAACAAGGCACAAGATTAAGCGGGAAGCT CGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCGGTAA AAAAAGTATCGAGAAGAGCGAACGACCGAGCCGTTGGAGCTGGTGCGCAC CGACATAGCCGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCA TCGTCTTCGTCGACGACTGTAGCAGAATGCACAAAGTCTATACCTTGCGA CTAAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTGGC GAGGGCAAACGGTTTGCGGATTAAGCGCCTCCGGTCGGATCAGGGAGGAG AATATACTGGGAAGCCATTTAGGTAATTCTGCGCGGAGATGGCATCAAGC AGGAGTTCTCTGCCGCCTACACACTGCAACAAAACGGTGTGGCGGAGCGC AGCTGGCGCAGCATTTTCGAGATGGCAAGAGCCAGCATGATCACCGCCAA CATGGGTCGCAGATATTGGGCGGAAGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig43274:295..1572+

>mRNA_H-paniculata_contig43274.11039.1 ID=mRNA_H-paniculata_contig43274.11039.1|Name=mRNA_H-paniculata_contig43274.11039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig43274:295..1572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCAATGGTTGCTAGATCCCGTTGCCTGTGCGCCGCGATGGATGGA
GTCATCTAAATCGCACGTACACTGGATAGTTGATTCGGGCTGCGCCGGAC
ATCACCTGACCCCGCAACGCGACCTCTTCCAAAATTTTCGCCAGGTCGTA
CGTAGTCCCATTGTCACAGCGGGCGAGGGGGAGTTGGATGTAGAGGGGCA
AGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAGCCATTCGCATCA
TCTTCTGCAATGTAGTTTATGTACCTGAAGCATCAGACAGTATTTTATCG
GTTGGGCGGATGGTGAGCCAACGGATGCCCCAATGGTTGCTAGATCCCGT
TGCCTGTGCGCCGCGATGGATGGAGTCATCTAAATCGCACGTACACTGGA
TAGTTGATTCGGGCTGCGCCGGACATCACCTGACCCCGCAACGCGACCTC
TTCCAAAATTTTCGCCAGGTCGTACGTAGTCCCATTGTCACAGCGGGCGA
GGGGGAGTTGGATGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATTTGGA
CTGCGGAAGGAGCCATTCGCATCATCTTCTGCAATGTAGTTTATGTACCT
GAAGCATCAGACAGTATTTTATCGGTTGGGCGGATGGTGAGCCAACGGGT
ACAGGCTGCAAAACGGGACACCGGAAAAGAAGTGAAGGGTCTTCGATTAT
TTAGCAAAGACTGCACCACCCCGAAGAACAATGAGAAGAGGCAACAGGTG
GTGGACACCAAGTTACTACGCGAGCGACTTGGGCATGTTCGAGACTTTCC
CACAGTCGCGCGGCAACAAGGCACAAGATTAAGCGGGAAGCTCGGTGTCT
GCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCGGTAAAAAAAGTA
TCGAGAAGAGCGAACGACCGAGCCGTACAGGCTGCAAAACGGGACACCGG
AAAAGAAGTGAAGGGTCTTCGATTATTTAGCAAAGACTGCACCACCCCGA
AGAACAATGAGAAGAGGCAACAGGTGGTGGACACCAAGTTACTACGCGAG
CGACTTGGGCATGTTCGAGACTTTCCCACAGTCGCGCGGCAACAAGGCAC
AAGATTAAGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAG
CGTCGAAGCAGCCGGTAAAAAAAGTATCGAGAAGAGCGAACGACCGAGCC
GCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTGGCGAGGGCAAACGG
TTTGCGGATTAAGCGCCTCCGGTCGGATCAGGGAGGAGAATATACTGGGA
AGCCATTTAGGTAAGCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTG
GCGAGGGCAAACGGTTTGCGGATTAAGCGCCTCCGGTCGGATCAGGGAGG
AGAATATACTGGGAAGCCATTTAGGTAA
back to top