prot_H-paniculata_contig4322.11029.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4322.11029.1
Unique Nameprot_H-paniculata_contig4322.11029.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length78
Homology
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BLAST of mRNA_H-paniculata_contig4322.11029.1 vs. uniprot
Match: A0A6H5KV99_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV99_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.480e-34
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0 
Query:    1 QWDRFEVKLSKPSGKQKLGMVLKHAQLFGVDKVKRGAYLASLAQGPSVAQDLGLKPKDRLISVDGEDVKALAFDRIG 77
            QWDRFEV LSKPSG QKLGMVLKHAQ+ G +++KRGAYLA LA+GPS+AQDLGL PKDRLI V+G DVK L FDRIG
Sbjct:   23 QWDRFEVVLSKPSGSQKLGMVLKHAQVCGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIG 99
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BLAST of mRNA_H-paniculata_contig4322.11029.1 vs. uniprot
Match: D7FYS1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.440e-21
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 0 
Query:   20 MVLKHAQLFGVDKVKRGAYLASLAQGPSVAQDLGLKPKDRLISVDGEDVKALAFDRI 76
            MVLKHAQ+FG +++KRGAYLA LA+GPS+AQDLGL PKDRLI V+G DVK L FDRI
Sbjct:    1 MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4322.11029.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV99_9PHAE1.480e-3477.92PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS1_ECTSI2.440e-2175.44PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 1..76
e-value: 8.4E-8
score: 34.2
IPR001478PDZ domainPFAMPF00595PDZcoord: 7..72
e-value: 6.7E-8
score: 32.8
IPR001478PDZ domainPROSITEPS50106PDZcoord: 6..77
score: 11.38
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 3..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4322contigH-paniculata_contig4322:124..4213 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4322.11029.1mRNA_H-paniculata_contig4322.11029.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4322 124..4213 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4322.11029.1 ID=prot_H-paniculata_contig4322.11029.1|Name=mRNA_H-paniculata_contig4322.11029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
QWDRFEVKLSKPSGKQKLGMVLKHAQLFGVDKVKRGAYLASLAQGPSVAQ
DLGLKPKDRLISVDGEDVKALAFDRIG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf