mRNA_H-paniculata_contig4322.11029.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4322.11029.1
Unique NamemRNA_H-paniculata_contig4322.11029.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4322.11029.1 vs. uniprot
Match: A0A6H5KV99_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV99_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.480e-34
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 QWDRFEVKLSKPSGKQKLGMVLKHAQLFGVDKVKRGAYLASLAQGPSVAQDLGLKPKDRLISVDGEDVKALAFDRIG 231
            QWDRFEV LSKPSG QKLGMVLKHAQ+ G +++KRGAYLA LA+GPS+AQDLGL PKDRLI V+G DVK L FDRIG
Sbjct:   23 QWDRFEVVLSKPSGSQKLGMVLKHAQVCGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIG 99
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BLAST of mRNA_H-paniculata_contig4322.11029.1 vs. uniprot
Match: D7FYS1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.440e-21
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:   58 MVLKHAQLFGVDKVKRGAYLASLAQGPSVAQDLGLKPKDRLISVDGEDVKALAFDRI 228
            MVLKHAQ+FG +++KRGAYLA LA+GPS+AQDLGL PKDRLI V+G DVK L FDRI
Sbjct:    1 MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4322.11029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV99_9PHAE1.480e-3477.92PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS1_ECTSI2.440e-2175.44PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4322contigH-paniculata_contig4322:124..4213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930312.8765304-CDS-H-paniculata_contig4322:123..2791622930312.8765304-CDS-H-paniculata_contig4322:123..279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4322 124..279 -
1691481237.114146-CDS-H-paniculata_contig4322:123..2791691481237.114146-CDS-H-paniculata_contig4322:123..279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4322 124..279 -
1622930312.892854-CDS-H-paniculata_contig4322:4135..42131622930312.892854-CDS-H-paniculata_contig4322:4135..4213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4322 4136..4213 -
1691481237.1272554-CDS-H-paniculata_contig4322:4135..42131691481237.1272554-CDS-H-paniculata_contig4322:4135..4213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4322 4136..4213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4322.11029.1prot_H-paniculata_contig4322.11029.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4322 124..4213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4322.11029.1

>prot_H-paniculata_contig4322.11029.1 ID=prot_H-paniculata_contig4322.11029.1|Name=mRNA_H-paniculata_contig4322.11029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
QWDRFEVKLSKPSGKQKLGMVLKHAQLFGVDKVKRGAYLASLAQGPSVAQ
DLGLKPKDRLISVDGEDVKALAFDRIG*
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mRNA from alignment at H-paniculata_contig4322:124..4213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4322.11029.1 ID=mRNA_H-paniculata_contig4322.11029.1|Name=mRNA_H-paniculata_contig4322.11029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4090bp|location=Sequence derived from alignment at H-paniculata_contig4322:124..4213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGGACAGGTTCGAAGTGAAGCTGTCCAAGCCTTCGGGCAAGCAGAA
ACTAGGGATGGTGCTCAAGCATGCACAGGTAGGCCTTGCTGTCTGTACAG
GTATTAACTAGACGTCTGTAGACTGTATAGGTTATTTCTTTCTGTCCGGC
TGGCTGGAATAAACACCTTTTCTCGCACTTGGCAATCGCTTCTACCGCAT
CTATATTGGCCAAAGGCATGATGATGTGATGTTGTTGCGTTGTTCAAATC
TGTAGATTTACACCTCAGAAGGTACACTAAGGTGCTTTCAAGTAGTTGGA
AGGGGCGAGGTGTACATATTTGTACCTTATTAAATAACACCTGGTACATA
ACACTTGAACACTGAGCGCCTTCACCGCCTCCATTCAATGGAAAATTCTC
GGCTCCGTGTTTCTGTCGACTCGAGACCGAAGACTCGACTCCTGTGCGTT
TGTAATAATCCATTTTAAACGGTACATCTGTACCGACCATGCGCGAACTA
ACGAAACACCGCCTTGCCACCTGACGGACAAAAATGCCGCTCTGTTCTCC
ACCGCAACTCACACAAACGGCAAGGCGGTGCCGTTTGGTGGGCCTCCGTC
TCTCGAAAATCGTAGACCTCCAACACTTGAGCCTACCCATTCAGCCAACT
TCCGCTGTATGTGTTGACAGGTCGGAAACGTGCTTGCTTGTCGACAACCT
CTTTTGTTCCCCGTTTTTGCGAAATCTTCAAGTTTACGATCTTGATCAAC
GGTAACGTACAAACAAAACGATTAAAAAAAAATGGCCTGATCTTCCGCCA
GCTAGAGTACGAACTGTGGCAGTCTCTACTCCGTTACTCTGACAAAGTGT
CGTATAAATGACGTCACAGCCGTAGACATGAAGTCATATATCTAGCCTTA
ACGGTCACCTAATGTATGGATACGAGGTCCTGTCGCACAAAGGGGGTGGG
GTCGGGGAGGTCGTTTTTGTAGGGGGGAGAGAGAGGGAACTCAGGAATAT
ACAGTAGTTTTTACTGATGGAGTATGGACTGCAACGTTGATCTTGTTGCC
CCTTTAATTGTTAGTTCTTGATTTTTGCTTCTTTTCCCTGTAATATGCTA
AGATTGTGTTGGAAGAATCGGCAGAACTTGAAACATTTTTCATGTAGGTG
CACTCTAGGAGAAAATGGCACTTGATCATCTCGAAAATTTTGAATAGTTG
GAGAAATAAAAATAAGAACAAAAACAGGTCAGAAAAAAGAGGGAGAAGAA
AAAAAAGAAAAAAAAACACCGACGTTTGAAATGGCCCTCAAAGGTCCTGG
AAAAGTTGAGCGAAAACATGAACAGAGGCCAATCACAAACGTTTGTTCCA
TCTAAAGGACCAATGTTAATCGTGTTCTATCCCATACATTAGCCGACTTG
ATTTGGGAAGTACAATCCCCAACCAAGTCTCACCGTCGCTGATGGAGGAT
CGAGAAAGATGGATTTTGGGAAGTCATTCTTGGACTGGCTGCATGGTGTA
TGAGCACGTACTAGCCATCGAAATGGCCCTGTCAGGACCTGGTTCTTTTT
TTTTCTTGCCCTGGTGTACGGCTTTGTGTGGCATACATTCCGCTGCACAG
TTAATCAGAGTATGGTTTGCATGTTCATGTGAAAATTCCATTTTACCCAT
GTTGAGGTTATTCAGCTGATATGCACTTGTATACACTTCAGCGATTTTAT
TGTGGCAGCACGGATCTGGGCAAAAACAAATCTGGGAATCGATTCCGTGT
GGTCAAAATCCGTTTTGGCTATTTTATGGGAACGTGTTTGGCGTCATCCG
TGAAGCTGAGATCCGTATTCGTTTCTGCTCCGTAATACCACACAAATTTG
AGCACCAGATCCGTGCTGGTTTTGGGCCTCGCGTGTTTCAGTGTTCTGGT
CATTAAAGAGGCGTTGGTGTCGTGAGCTGGGCTGTTGAAGAGGAGCGCTA
AATTTGGGTTGGGTGCATATATACTCACGTTGCAAGGGCAGGGAGGGGTT
AGGCCAATGAGACCACGATGTCATGACACGGTGAAGTCATTCTCTCAAAG
CTGCTGGCTTTGAGGTAGAAGGTGTCGTCGTTGTCTACTTGTCGAGCAAT
GAAATACCAAGGGCTCACAAATATTCAGCTCAGGCTGTTGTGTTTAGCTG
TTGCCAAAGCAATCACCGTTTTTCATTTTTCAGTTTGTCGTTTATGCGCC
TACCTCCCATACAGTCGGGGCTGGATGTAGGTCTCCGGGAGACAAATACC
TGGCAGCGAGGGTACTCAGCACCTCATTCCCTCGTACCTGTGTGCAGGCG
TAGTCTTCTTTGCTCAAACTGACTATTCCGATGCCCATTATTGAACGGGG
ATCCTATGGGTATTAGCGTGCTAATGGTTAAGTTACGGTACGATGCTGGC
TGACCGCGAGCCTCGTTTCGGAATAGAATAGAAATTGACGTGTCGTACTA
CTATGGAACATAACTCGAGAAGTACGGCGAATATTTTAATGCTGTTTTTC
TTACGAGTGCCCTGAGTGACACAGAAAAAATCCACCTCGGATTGTGTTCA
ATTTTTTTTTTTCAACTAGAATGCAAAAAAATATATATTTTTTCTCATAG
GTAAATATGAATAGGATTTTCGGGCATTATCTCGATAATTACAAGGGGAA
AAAAATGATACAGCACATTATCTCGGTGTAGTCAATAGAAAGATTAAATA
TAAAACAAAAAACGTTATATTGATTGATGGATATCCTTCAAGTTTACACT
GTGTTGTAGAGTATGGCAAAAAAAAAATATGCCTGCTGCAACAACACATA
GATTGAGCTCTTCAGACCGAATCTCCAAAAACCCATACATGAATCTATGC
ACCTGGTCTTTAAGGAAGACCTCCACCGAATCTGGCAGCAATCCGCGCGG
CGGTGCAAATTTTACTTCAAATCTGGTGGGTTTTTGAATGTCGATGTGTG
CAACGTTTTGAAAACATGATCTTTTTCAACTTGTGTTGCACCGTTGGAAG
CGTTAGATTGTACGCTCTCCGGAGATACCTACATGGGCGCATACAAATTA
TTCCATGAAATATTACAGCCAAATTATCATCCGTTTTGGGCCCAAATTGC
GGATTTTGCTGGGCATGCGAAAGCGCCGTATTTAGTGAGATAGAGAGAGT
GATTAGTATGTCCCACAGAAGTGGGGCAGGAAAGGTAATCTCCAAAAACT
GGACCGCCATGCTGTACATAGTGTACATATTTCATCTTAGTGTTACCTGT
GTACGTGGAAAAGAGACGTACGTGAAGACGGCTGCAGTTGGAGTTCCTAG
TTGTCTGTATGAGGTTTGGTGTACAGCTGAACGCACAGGTTTGAACAACG
GCTCAGCGTGACAACATGAACTATACACCAAGTATAGAGTACAGACTGTT
GTGTGCACCGTATCGCGTTATCATCCCAAAATGTCACCGATAAGTGTGGA
CTCCTTTCAACAGGTGCAACCAACCGCGTGCGATATCTATACCCTTTTAC
AGGAATCAGTGAGTTTTGCCTAACTCGCCCTCTTCTCTACTTGGAGTTGT
TGAGCAGTATTTGGGGAGGTGTCATACTTTTCTTCAGTGTAATTTTTGTG
CAAAATATGAAGAATTCGTCATCATCCACAAGTGTTCGTTTAGTTTACAA
GTATATTGCTTTAGTCATCACAGAGTCTAGATTCCCACATGATTAAGAAA
AGCCCAAAACCTGTAGCATAGGAAAAAAAAAAAAAAAAAAAACTCGTCTC
GTCGTGATGACATCCTAGCAACACACTCTACTGTTATCCTCTTAAAATCT
CCTATTCCATTGTAGATTTTCCACGAAGCCGCCCGTATGTGTGGCCGCCG
GAGACCCTTGTATTTTTTATTTTTGCTTCAATAGTACTGACCCTTTTTCC
CTTGGTGTTCCCGCCCTGCTGCAACTTTCCCCAGCTGTTTGGGGTGGACA
AGGTGAAACGGGGAGCCTACCTCGCGAGCCTGGCCCAAGGGCCCAGCGTA
GCTCAAGACCTCGGGCTGAAACCCAAAGATAGGCTCATATCCGTGGACGG
GGAGGACGTGAAAGCGCTGGCGTTTGATCGCATCGGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4322:124..4213-

>mRNA_H-paniculata_contig4322.11029.1 ID=mRNA_H-paniculata_contig4322.11029.1|Name=mRNA_H-paniculata_contig4322.11029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig4322:124..4213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGGACAGGTTCGAAGTGAAGCTGTCCAAGCCTTCGGGCAAGCAGAA
ACTAGGGATGGTGCTCAAGCATGCACAGCAGTGGGACAGGTTCGAAGTGA
AGCTGTCCAAGCCTTCGGGCAAGCAGAAACTAGGGATGGTGCTCAAGCAT
GCACAGCTGTTTGGGGTGGACAAGGTGAAACGGGGAGCCTACCTCGCGAG
CCTGGCCCAAGGGCCCAGCGTAGCTCAAGACCTCGGGCTGAAACCCAAAG
ATAGGCTCATATCCGTGGACGGGGAGGACGTGAAAGCGCTGGCGTTTGAT
CGCATCGGTTAGCTGTTTGGGGTGGACAAGGTGAAACGGGGAGCCTACCT
CGCGAGCCTGGCCCAAGGGCCCAGCGTAGCTCAAGACCTCGGGCTGAAAC
CCAAAGATAGGCTCATATCCGTGGACGGGGAGGACGTGAAAGCGCTGGCG
TTTGATCGCATCGGTTAG
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