mRNA_H-paniculata_contig43209.11028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43209.11028.1
Unique NamemRNA_H-paniculata_contig43209.11028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: A0A6A5LAB7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LAB7_LUPAL)

HSP 1 Score: 62.8 bits (151), Expect = 2.240e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    7 YILSHS---FGKLLSPVHFRRRITRPVSYYALFKGLLLLSKPP 126
            Y + HS   FGKLLSP +FRR+  RPVSYYALFKGLLLLS+PP
Sbjct:    9 YSIRHSHFHFGKLLSPKNFRRKTARPVSYYALFKGLLLLSEPP 51          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: A0A418V1F8_9DEIO (Uncharacterized protein n=1 Tax=Deinococcus cavernae TaxID=2320857 RepID=A0A418V1F8_9DEIO)

HSP 1 Score: 60.5 bits (145), Expect = 1.570e-10
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPISQT 156
            LSP HFRR +TRPVSYYALF+G LLLS+PPGCL    S T
Sbjct:   42 LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLT 81          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: C6J7T2_9BACL (Uncharacterized protein n=2 Tax=unclassified Paenibacillus TaxID=185978 RepID=C6J7T2_9BACL)

HSP 1 Score: 58.5 bits (140), Expect = 3.530e-10
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCL 135
            L+P+HFRRR+TRPVSYYALFK  LLLS+ PGCL
Sbjct:    4 LAPLHFRRRVTRPVSYYALFKWWLLLSQHPGCL 36          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: Q9RS75_DEIRA (Uncharacterized protein n=2 Tax=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) TaxID=243230 RepID=Q9RS75_DEIRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.840e-10
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPISQT 156
            LSP HFRR +TRPVSYYALF+G LLLS+PPGCL    S T
Sbjct:   85 LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLT 124          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: I7J2P1_9BURK (Uncharacterized protein (Fragment) n=1 Tax=Taylorella asinigenitalis 14/45 TaxID=1091495 RepID=I7J2P1_9BURK)

HSP 1 Score: 56.2 bits (134), Expect = 3.520e-9
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPIS 150
            L+P+H  RR TR VSYYA FKG LLLS+PP CL LP S
Sbjct:   13 LAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCLCLPTS 50          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: A0A6I7WGG5_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium HT1 TaxID=1916061 RepID=A0A6I7WGG5_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 4.240e-9
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPISQTHRWTIW 174
            L+PV+  R+ TRPVSYYA FKG LLLS+PPGCL L  S       W
Sbjct:   13 LAPVNLPRKPTRPVSYYAFFKGWLLLSQPPGCLGLFTSFPTEHRFW 58          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: L9U5K2_9GAMM (Uncharacterized protein n=1 Tax=Halomonas titanicae BH1 TaxID=1204738 RepID=L9U5K2_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 5.080e-9
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPIS 150
            L+P+H  RR TR VSYYA FKG LLLS+PP CLSLP S
Sbjct:   58 LAPLHLPRRPTRLVSYYAFFKGWLLLSQPPSCLSLPTS 95          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: R6UK25_9FIRM (Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium CAG:64 TaxID=1262981 RepID=R6UK25_9FIRM)

HSP 1 Score: 59.3 bits (142), Expect = 5.240e-9
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPIS 150
            L+PVHFRRR+TR VS YALF+G LLLS+PP CL +P S
Sbjct:  179 LAPVHFRRRVTRLVSCYALFEGWLLLSQPPSCLCIPTS 216          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: A0A0H3KX17_BURM1 (Uncharacterized protein n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) TaxID=395019 RepID=A0A0H3KX17_BURM1)

HSP 1 Score: 56.6 bits (135), Expect = 1.250e-8
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPIS 150
            L+P+H  RR TR VSYYA FKG LLLS+PP C SLP S
Sbjct:   83 LAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCFSLPTS 120          
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Match: A0A0J8AWR0_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8AWR0_BETVV)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-8
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   37 LSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPIS 150
            L+P++  RR TRPVSYYA FKG LLLS+PPGCL L  S
Sbjct:   40 LAPLNLPRRPTRPVSYYAFFKGWLLLSQPPGCLCLSTS 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43209.11028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6A5LAB7_LUPAL2.240e-1172.09Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A418V1F8_9DEIO1.570e-1072.50Uncharacterized protein n=1 Tax=Deinococcus cavern... [more]
C6J7T2_9BACL3.530e-1078.79Uncharacterized protein n=2 Tax=unclassified Paeni... [more]
Q9RS75_DEIRA4.840e-1072.50Uncharacterized protein n=2 Tax=Deinococcus radiod... [more]
I7J2P1_9BURK3.520e-968.42Uncharacterized protein (Fragment) n=1 Tax=Taylore... [more]
A0A6I7WGG5_9GAMM4.240e-958.70Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]
L9U5K2_9GAMM5.080e-971.05Uncharacterized protein n=1 Tax=Halomonas titanica... [more]
R6UK25_9FIRM5.240e-971.05Uncharacterized protein n=1 Tax=Erysipelotrichacea... [more]
A0A0H3KX17_BURM11.250e-868.42Uncharacterized protein n=1 Tax=Burkholderia multi... [more]
A0A0J8AWR0_BETVV1.310e-868.42Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43209contigH-paniculata_contig43209:1429..1626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog4155.Migut.D01397.1.p
Hectar predicted targeting categoryother localisation
EggNOG OGs2E30T@1,2SA69@2759,37XUE@33090,3GWDE@35493,44U28@71274
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930312.8323762-CDS-H-paniculata_contig43209:1428..16261622930312.8323762-CDS-H-paniculata_contig43209:1428..1626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43209 1429..1626 +
1691481237.1046584-CDS-H-paniculata_contig43209:1428..16261691481237.1046584-CDS-H-paniculata_contig43209:1428..1626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43209 1429..1626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43209.11028.1prot_H-paniculata_contig43209.11028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43209 1429..1626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43209.11028.1

>prot_H-paniculata_contig43209.11028.1 ID=prot_H-paniculata_contig43209.11028.1|Name=mRNA_H-paniculata_contig43209.11028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
IIYILSHSFGKLLSPVHFRRRITRPVSYYALFKGLLLLSKPPGCLSLPIS
QTHRWTIWFDRPGAVL
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mRNA from alignment at H-paniculata_contig43209:1429..1626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43209.11028.1 ID=mRNA_H-paniculata_contig43209.11028.1|Name=mRNA_H-paniculata_contig43209.11028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig43209:1429..1626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATTTATATATTATCTCACAGCTTCGGCAAATTACTTAGTCCCGTTCA TTTTCGGCGCAGGATTACTAGACCAGTGAGCTATTACGCACTCTTTAAAG GATTGCTGCTTCTAAGCAAACCTCCTGGTTGTTTAAGTCTTCCCATCTCT CAGACCCACCGTTGGACAATTTGGTTTGACCGACCGGGAGCGGTACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig43209:1429..1626+

>mRNA_H-paniculata_contig43209.11028.1 ID=mRNA_H-paniculata_contig43209.11028.1|Name=mRNA_H-paniculata_contig43209.11028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig43209:1429..1626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATTTATATATTATCTCACAGCTTCGGCAAATTACTTAGTCCCGTTCA
TTTTCGGCGCAGGATTACTAGACCAGTGAGCTATTACGCACTCTTTAAAG
GATTGCTGCTTCTAAGCAAACCTCCTGGTTGTTTAAGTCTTCCCATCTCT
CAGACCCACCGTTGGACAATTTGGTTTGACCGACCGGGAGCGGTACTCAT
TATTTATATATTATCTCACAGCTTCGGCAAATTACTTAGTCCCGTTCATT
TTCGGCGCAGGATTACTAGACCAGTGAGCTATTACGCACTCTTTAAAGGA
TTGCTGCTTCTAAGCAAACCTCCTGGTTGTTTAAGTCTTCCCATCTCTCA
GACCCACCGTTGGACAATTTGGTTTGACCGACCGGGAGCGGTACTC
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