mRNA_H-paniculata_contig43138.11010.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 137 bits (346), Expect = 2.310e-37 Identity = 83/203 (40.89%), Postives = 116/203 (57.14%), Query Frame = 1
Query: 1 KLLHERLGHVR--------DLPTVARQQGIRLSGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAGQVD-KSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVA------RANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
+L H+R GH+ ++ +GI+ G VC+ CE K +KK T ER EPLELVHTD+ G V+ +S GG R+ I F DDY R R VY ++ KS++L +K++ +D+ + N LR LRSD GEYT FK FC +G +++F Y PQ NGVAE+SW + MA + I A +G +WAEA+
Sbjct: 2 ELWHQRFGHINYEYLRQMGEIDDTGVPKGIKKPG---VCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKGFWAEAL 199
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC) HSP 1 Score: 134 bits (336), Expect = 7.120e-36 Identity = 80/201 (39.80%), Postives = 116/201 (57.71%), Query Frame = 1
Query: 1 KLLHERLGHVR--------DLPTVARQQGIRLSGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAGQVD-KSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVARAN-GLRVKRL---RSDQEGEYT---FKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
+L H+R GH+ ++ ++GI+ G V CE K +K+ T ER EPLEL+HTD+ G ++ +S GG R+ I F DDY R R VY ++ KSE+L +K++ +D++ + +VK L RSD GEYT FK FC NG +++F Y PQ NGVAE+SW + MA + I A +G +WAEA+
Sbjct: 2 ELWHKRFGHINYEYLRQMGEIDDTGVRKGIKKPG---VYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDISVLHRDSKVKTLIGLRSDNGGEYTGINFKHFCKNNGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKGFWAEAL 199
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 136 bits (343), Expect = 8.840e-36 Identity = 83/203 (40.89%), Postives = 115/203 (56.65%), Query Frame = 1
Query: 1 KLLHERLGHVR--------DLPTVARQQGIRLSGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAGQVD-KSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVA------RANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
+L H+R GH+ ++ +GI+ G VC CE K +K+ T ER EPLELVHTD+ G V+ +S GG R+ I F DDY R R VY ++ KSE+L +K++ +D+ + N LR LRSD GEYT FK FC +G +++F Y PQ NG+AE+SW + MA A I A +G +WAEA+
Sbjct: 22 ELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPG---VCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEAL 219
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.770e-35 Identity = 84/203 (41.38%), Postives = 116/203 (57.14%), Query Frame = 1
Query: 1 KLLHERLGHVR--------DLPTVARQQGIRLSGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAGQVD-KSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVA------RANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
+L H+R GH+ ++ +GI+ G VC CE K +K+ T ER EPLELVHTD+ G V+ +S GG R+ I F DDY R R VY ++ KSE+L +K++ +D+ + N LR LRSD GEYT FK FC +G +++F Y PQ NGVAE+SW + MA + I A +G R+WAEA+
Sbjct: 22 ELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPG---VCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEAL 219
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.160e-34 Identity = 84/203 (41.38%), Postives = 115/203 (56.65%), Query Frame = 1
Query: 1 KLLHERLGHVR--------DLPTVARQQGIRLSGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAGQVD-KSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVA------RANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
+L H+R GH+ ++ +GI+ G VC CE K +KK T ER EPLELVHTD+ G V+ +S GG R+ I F DDY R R VY ++ KSE+L +K++ +D+ + N LR LRSD GEYT FK FC +G +++F Y PQ NG+AE+SW + MA A I A +G +WAEA+
Sbjct: 68 ELWHQRFGHINYEYLKQMGEIDDTGVPKGIKKPG---VCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGVDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEAL 265
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A5A7T166_CUCME (Ty1-copia retrotransposon protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7T166_CUCME) HSP 1 Score: 135 bits (340), Expect = 1.850e-33 Identity = 80/193 (41.45%), Postives = 117/193 (60.62%), Query Frame = 1
Query: 4 LLHERLGHVRDLPTVARQQGIRL-----SGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAG-QVDKSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEY---TFKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
L H RLGHV + ++ + + +RL + + CS C K KKP K E RTTE LEL+H+D+A + S GG + ++FVDDY R K+Y++R K+EA+ +F+ + G R+KRLRSD+ GEY T K+FC NG EF+A Y+PQ NG+AER R++ EM +A ++++ + W EAV
Sbjct: 467 LWHGRLGHV-NFASIRKLKDMRLINTSETHETGKCSICIESKFHKKPFKPV-EYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIRTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAV 657
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A5A7SP23_CUCME (Ty1-copia retrotransposon protein n=8 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SP23_CUCME) HSP 1 Score: 135 bits (339), Expect = 2.630e-33 Identity = 81/193 (41.97%), Postives = 117/193 (60.62%), Query Frame = 1
Query: 4 LLHERLGHVRDLPTVARQQGIRL-----SGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAG-QVDKSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEY---TFKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
L H RLGHV + ++ + + +RL + + CS C K KKP K E RTTE LEL+H+D+A + S GG + ++FVDDY R KVY++R K+EA+ +F+ + G R+KRLRSD+ GEY T K+FC NG EF+A Y+PQ NG+AER R++ EM +A ++++ + W EAV
Sbjct: 604 LWHGRLGHV-NFASIRKLKDMRLINTSETHETGKCSICIESKFHKKPFKPV-EYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRYTKVYLIRTKNEAVSMFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAV 794
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A5D3DHN5_CUCME (Ty1-copia retrotransposon protein n=5 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DHN5_CUCME) HSP 1 Score: 134 bits (338), Expect = 3.540e-33 Identity = 80/193 (41.45%), Postives = 117/193 (60.62%), Query Frame = 1
Query: 4 LLHERLGHVRDLPTVARQQGIRL-----SGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAG-QVDKSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEY---TFKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
L H RLGHV + ++ + + +RL + + CS C K KKP K E RTTE LEL+H+D+A + S GG + ++FVDDY R K+Y++R K+EA+ +F+ + G R+KRLRSD+ GEY T K+FC NG EF+A Y+PQ NG+AER R++ EM +A ++++ + W EAV
Sbjct: 467 LWHGRLGHV-NFASIRKLKDMRLINTSETHETGKCSICIESKFHKKPFKPV-EYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRYTKIYLIRTKNEAVSMFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAV 657
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A5D3C5T2_CUCME (Ty1-copia retrotransposon protein n=8 Tax=Cucumis melo TaxID=3656 RepID=A0A5D3C5T2_CUCME) HSP 1 Score: 134 bits (338), Expect = 3.600e-33 Identity = 80/193 (41.45%), Postives = 117/193 (60.62%), Query Frame = 1
Query: 4 LLHERLGHVRDLPTVARQQGIRL-----SGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAG-QVDKSFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEY---TFKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
L H RLGHV + ++ + + +RL + + CS C K KKP K E RTTE LEL+H+D+A + S GG + ++FVDDY R K+Y++R K+EA+ +F+ + G R+KRLRSD+ GEY T K+FC NG EF+A Y+PQ NG+AER R++ EM +A ++++ + W EAV
Sbjct: 467 LWHGRLGHV-NFASIRKLKDMRLINTSETHETGKCSICIESKFHKKPFKPV-EYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRYTKIYLIRTKNEAVSMFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAV 657
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR) HSP 1 Score: 133 bits (335), Expect = 8.150e-33 Identity = 76/192 (39.58%), Postives = 116/192 (60.42%), Query Frame = 1
Query: 10 HERLGHV--RDLPTVARQQGIR----LSGKLSVCSACETGKASKKPVKTYREERTTEPLELVHTDIAGQVDK-SFGGCRFVITFVDDYRRMRKVYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEY---TFKQFCAENGTKREFSAAYTPQ*NGVAERSWRSIFEMASASMITANMGHRYWAEAV 555
H RL HV + + T+ +++ +R +SGK +C C GK +++ + R+TE LEL+HTD+ G + S G R+V+ F+DD R VY+L+ K E+ A K+F+ V +G ++K LRSD+ GE+ +F +FCA++G KR+ +AAYTPQ NGVAER R+I M S+ + +W EAV
Sbjct: 445 HRRLAHVNYKAIKTMQQKEMVRGLPEVSGKAMICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRFKVAVENESGCKIKALRSDRGGEFNSQSFNEFCAQSGIKRQLTAAYTPQQNGVAERRNRTIMNMVRCSLTDKKVPKCFWPEAV 636 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43138.11010.1 >prot_H-paniculata_contig43138.11010.1 ID=prot_H-paniculata_contig43138.11010.1|Name=mRNA_H-paniculata_contig43138.11010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp MRKVYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYTFKQFCAback to top mRNA from alignment at H-paniculata_contig43138:24..578- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43138.11010.1 ID=mRNA_H-paniculata_contig43138.11010.1|Name=mRNA_H-paniculata_contig43138.11010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=555bp|location=Sequence derived from alignment at H-paniculata_contig43138:24..578- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43138:24..578- >mRNA_H-paniculata_contig43138.11010.1 ID=mRNA_H-paniculata_contig43138.11010.1|Name=mRNA_H-paniculata_contig43138.11010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig43138:24..578- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |