prot_H-paniculata_contig43138.11010.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig43138.11010.1
Unique Nameprot_H-paniculata_contig43138.11010.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length66
Homology
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.270e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++K+E L   K+FE D+  A G ++KRLRSD  GEYT   FK++ ++ G + E +  YTPQ
Sbjct:   79 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQ 143          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6A4ASW4_9STRA (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ASW4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.880e-8
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++KSE L   K F+ D+  A G ++KR+RSD  GEYT   FK++ ++ G + E + +YTPQ
Sbjct:  150 VYFMKKKSEVLEKFKMFKADMENATGRKIKRIRSDNGGEYTGRIFKEYLSKQGNRHEKTVSYTPQ 214          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.110e-8
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++K+E L   K F+ D+  A G ++KRLRSD  GEYT   FK++ ++ G + E +  YTPQ
Sbjct:   55 VYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQ 119          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: UPI00159ED418 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. GF14B TaxID=2511982 RepID=UPI00159ED418)

HSP 1 Score: 55.5 bits (132), Expect = 2.190e-8
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYTFKQF---CAENGTKREFSAAYTPQ 65
            V++LRQKSEAL   KQF +      G R+K+LRSD  GEY  ++F   CA NG   E +  Y+PQ
Sbjct:   37 VFLLRQKSEALSVFKQFHKAAELQIGRRLKKLRSDNGGEYVSREFVSYCAHNGIHYEHTIPYSPQ 101          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.620e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++K+E L   K+FE D+  A G ++KRLRSD  GEYT   FK++ ++ G + E +  YTPQ
Sbjct:   55 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQ 119          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6A3GPC9_9STRA (Integrase catalytic domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GPC9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.770e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++K+E L   K+FE D+  A G ++KRLRSD  GEYT   FK++ ++ G + E +  YTPQ
Sbjct:  130 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQ 194          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6A3H6E3_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3H6E3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.840e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++K+E L   K+FE D+  A G ++KRLRSD  GEYT   FK++ ++ G + E +  YTPQ
Sbjct:  188 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQ 252          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6A3HS75_9STRA (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HS75_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-8
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++K+E L   K F+ D+  A G ++KR+RSD  GEYT   FK++ ++ G ++E +  YTPQ
Sbjct:   79 VYFMKKKAEVLEKFKMFKADMENATGCKIKRIRSDNSGEYTGRLFKEYLSKQGIRQEKTVPYTPQ 143          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6A3ITQ5_9STRA (Integrase catalytic domain-containing protein n=5 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3ITQ5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.750e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++K+E L   K+F+ D+  A G  +KRLRSD  GEYT   FK++ ++ G +RE +  YTPQ
Sbjct:  220 VYFMKKKAEVLEKFKKFKADMENATGRNIKRLRSDNGGEYTGRLFKEYLSKQGIRREKTVPYTPQ 284          
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Match: A0A6G0R8U1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R8U1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.860e-8
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    4 VYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYT---FKQFCAENGTKREFSAAYTPQ 65
            VY +++KSE L   K F+ D+  A G ++KR+RSD  GEYT   FK++ ++ G + E + +YTPQ
Sbjct:  130 VYFMKKKSEVLEKFKMFKADMENATGRKIKRIRSDNGGEYTGRIFKEYLSKQGNRHEKTVSYTPQ 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43138.11010.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0JTE1_9STRA1.270e-844.62Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A4ASW4_9STRA1.880e-843.08Integrase catalytic domain-containing protein (Fra... [more]
A0A6A3LQ24_9STRA2.110e-843.08Integrase catalytic domain-containing protein n=1 ... [more]
UPI00159ED4182.190e-847.69DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6A4CGC1_9STRA2.620e-844.62Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A3GPC9_9STRA2.770e-844.62Integrase catalytic domain-containing protein n=7 ... [more]
A0A6A3H6E3_9STRA2.840e-844.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3HS75_9STRA3.650e-841.54Integrase catalytic domain-containing protein (Fra... [more]
A0A6A3ITQ5_9STRA3.750e-844.62Integrase catalytic domain-containing protein n=5 ... [more]
A0A6G0R8U1_9STRA3.860e-843.08Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..65
e-value: 8.8E-6
score: 27.3
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43138contigH-paniculata_contig43138:123..320 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43138.11010.1mRNA_H-paniculata_contig43138.11010.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig43138 24..578 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig43138.11010.1 ID=prot_H-paniculata_contig43138.11010.1|Name=mRNA_H-paniculata_contig43138.11010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MRKVYILRQKSEALWAMKQFERDVARANGLRVKRLRSDQEGEYTFKQFCA
ENGTKREFSAAYTPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf