mRNA_H-paniculata_contig43053.10994.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig43053.10994.1
Unique NamemRNA_H-paniculata_contig43053.10994.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 2.080e-65
Identity = 132/283 (46.64%), Postives = 160/283 (56.54%), Query Frame = 1
Query:    1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKL----------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            MKL +SLYGL QSP NW+ T+D  + EI FV LKSDPCVY+Y    A            K+Y  LTLYVD+LL  GND   I M+K KL                            +T S    C S             +TPG G E S  QP + LLD ++ ++Y+ I G +MY+AQV RYDI YA  QLAR +  P+  H  AAK+ LRYLAGT+  +I YK  GFKL  F D+NW N+ DN KSTSSY+ MLA  P+SF+  LQG TA STMEAELVA
Sbjct:   65 MKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVA 333          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 4.050e-62
Identity = 133/283 (47.00%), Postives = 160/283 (56.54%), Query Frame = 1
Query:    1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKL----------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            MKL +SLYGL QSP NW+ T+D  L EI FV LKSDPCVY+Y    A            K+Y  LTLYVD+LL  GND   I M+K KL                            +T S    C S             +TPG G E S  QP + LLD ++ ++Y+ I G +MY+AQV RYDI YA  QLAR +  P+  H  AAK+ LRYLAGT+  +I YK  GFKL  F D+NW N+ DN KSTSSY+ MLA  P+SF+  LQG TA STMEAELVA
Sbjct:  625 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVA 893          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.990e-61
Identity = 132/283 (46.64%), Postives = 160/283 (56.54%), Query Frame = 1
Query:    1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKL----------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            MKL +SLYGL QSP NW+ T+D  L EI FV LKSDPCVY+Y    A            K+Y  LTLYVD+LL  GND   I M+K KL                            +T S    C S             +TPG G E S  QP + LLD ++ ++Y+ I G +MY+AQV RYDI YA  QLAR +  P+  H  AAK+ LRYLAGT+  +I YK  GFKL  F D+NW N+ DN KSTSSY+ +LA  P+SF+  LQG TA STMEAELVA
Sbjct: 1294 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVA 1562          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 3.810e-60
Identity = 122/244 (50.00%), Postives = 151/244 (61.89%), Query Frame = 1
Query:    1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRV-GNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            MKL +SL GL QSPQ+W  T+D  L EI F  LKSD CVY+Y               H     +LTLYVD+LL + G      G     ++    M  C   +T G GPE S+KQP E LL+AE  QRY+AI G VMYLAQVTRYDI Y  +Q ARA++ P+  H  AAK+LLRYL+G+   +I YK  GF LTA  +AN G+++DN KS SSYI+M++  P S K  LQ  TA ST+EAELVA
Sbjct:  445 MKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIY--------------DHNNTVVVLTLYVDDLLIIRGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVA 674          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 8.250e-60
Identity = 131/296 (44.26%), Postives = 161/296 (54.39%), Query Frame = 1
Query:    1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETII-----------------GMLKEKL------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            MKL +SLYGL QSP NW+ T+D  L EI FV LKSDPCVY+Y    A            K+Y  LTLYVD+LL  GND   I                 G L+++                         +T S    C S             +TPG G E S  QP + LLD ++ ++Y+ I G +MY+AQV RYDI YA  QLAR++  P+  H  AAK+ LRYLAGT+  +I YK  GFKL  F D+NW N+ DN KSTSSY+ MLA  P+SF+  LQG TA STMEAELVA
Sbjct:  273 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVA 554          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 3.310e-57
Identity = 107/243 (44.03%), Postives = 145/243 (59.67%), Query Frame = 1
Query:    1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            M+L++SLYGL Q   NW+ T+D +L E   V  KSD CVY++      E+  ++  + ++ +   TL +                 + ++    M +C   +TPG G E S KQP + LL  E+ +RY+ I G +MY+AQV RYDI YA  QLAR +  P+  H  AAK+ LRY+AGT    I YK++GFKL  F D+NW N+ DN KSTS Y+ ML  TPVS K  +QGPTA STMEAEL+A
Sbjct:  193 MQLQKSLYGLAQIASNWFHTIDPFLVENISVPRKSDTCVYLFKMTDMGEVKLVLGMEIKRDHNQGTLTISQKAYT-----------KSILERFGMSECKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEAELIA 424          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 6.030e-42
Identity = 106/263 (40.30%), Postives = 133/263 (50.57%), Query Frame = 1
Query:    1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKL----------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVS 669
            MKL +SLYGL QSP NW+ T+D  L EI FV LKSDPCVY+Y    A            K+Y  LTLYVD+LL  GND   I M+K KL                            +T S    C S             +TPG G E S  QP   LLD ++ ++Y+ I G  MY+A   +Y        LAR +  P+  H  AAK+ LR+L GT+  +I YK  GFKL  F D+NW N+ DN KST+SY+ ML   P+S
Sbjct: 1459 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQYT------WLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTASYLTMLVNAPMS 1701          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.230e-40
Identity = 99/270 (36.67%), Postives = 141/270 (52.22%), Query Frame = 1
Query:    4 KLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTAL----------------VTDKHQK------------VYTILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            KL +SLYGL QSP  W   ++  L    +    SDPCVY+++ +  DELT L                V+ K ++            V  ++ + V     +G      G     +     M++ +  +TPG G E S +QP ++LL  ED QR++AI G ++YLAQ TRYD  YAV+QL RA   PA  H AAAK+LLRYL GT    I YK   F+L+ F D+++G + DN +S + Y+  L    +S+    Q   AQ+T+EAEL A
Sbjct:   53 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRAHSDPCVYIFVRR--DELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSITGYLFFLGGGLISYGAKAQTLAAQNTLEAELQA 320          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.420e-40
Identity = 101/270 (37.41%), Postives = 144/270 (53.33%), Query Frame = 1
Query:    4 KLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTAL----------------VTDKHQK------------VYTILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            KL +SLYGL QSP  W   ++  L    +   +SDPCVY+++S   DELT L                V+ K ++            V  ++ + V      G      G     ++    M++ +  +TPG G E S +QP ++LL  ED QR++AI G ++YLAQ TRYD+ YAV+QL RA   PA  H AAAK+LLRYL GT    I YK   F+L+ F D+++G + DN +ST+ Y+  L    +S+    Q   AQ+T+EAEL A
Sbjct: 1143 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVS--GDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQA 1410          
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 4.430e-40
Identity = 99/270 (36.67%), Postives = 145/270 (53.70%), Query Frame = 1
Query:    4 KLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTAL--------VTDKHQKVYT--------------------ILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
            KL +SLYGL QSP  W   ++  L    +   +SDPCVY+++S   DELT L        +T  ++++ +                    ++ + V      G      G     ++    M++ +  +TPG G E S +QP ++LL  ED QR++AI G ++YLAQ TRYD+ YAV+QL RA   PA  H AAAK+LLRYL GT    I YK   F+L+ F D+++G + DN +ST+ Y+  L    +S+    Q   AQ+T+EAEL A
Sbjct:  364 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVS--GDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQA 631          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE2.080e-6546.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE4.050e-6247.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE2.990e-6146.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE3.810e-6050.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE8.250e-6044.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPN4_9PHAE3.310e-5744.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE6.030e-4240.30Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JW03_9PHAE2.230e-4036.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE4.420e-4037.41Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5JF46_9PHAE4.430e-4036.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig43053contigH-paniculata_contig43053:815..1664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score124.8
Seed ortholog evalue5.6e-26
Seed eggNOG ortholog15368.BRADI3G59536.1
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size729
Cds size729
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930308.3822343-CDS-H-paniculata_contig43053:814..12681622930308.3822343-CDS-H-paniculata_contig43053:814..1268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43053 815..1268 -
1691481235.2484975-CDS-H-paniculata_contig43053:814..12681691481235.2484975-CDS-H-paniculata_contig43053:814..1268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43053 815..1268 -
1622930308.4012644-CDS-H-paniculata_contig43053:1389..16641622930308.4012644-CDS-H-paniculata_contig43053:1389..1664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43053 1390..1664 -
1691481235.2639053-CDS-H-paniculata_contig43053:1389..16641691481235.2639053-CDS-H-paniculata_contig43053:1389..1664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig43053 1390..1664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig43053.10994.1prot_H-paniculata_contig43053.10994.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig43053 815..1664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig43053.10994.1

>prot_H-paniculata_contig43053.10994.1 ID=prot_H-paniculata_contig43053.10994.1|Name=mRNA_H-paniculata_contig43053.10994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADEL
TALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSS
ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAV
NQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANW
GNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA
back to top

mRNA from alignment at H-paniculata_contig43053:815..1664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig43053.10994.1 ID=mRNA_H-paniculata_contig43053.10994.1|Name=mRNA_H-paniculata_contig43053.10994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=850bp|location=Sequence derived from alignment at H-paniculata_contig43053:815..1664- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTTCGTCGATCTTTGTATGGTCTTCGACAGTCACCTCAGAACTG GTGGGTTACCATGGACAAATACCTGGGAGAAATTGAGTTTGTGGTTCTCA AGTCCGACCCGTGCGTGTATGTTTACCTTTCAAAGACCGCCGACGAGCTG ACGGCCTTGGTAACCGACAAGCACCAAAAGGTTTATACTATTCTCACATT GTATGTGGATAATCTGCTCAGGGTTGGAAACGATGAAACGATAATAGGCA TGCTCAAGGAGAAACTAATGACCAAGTTCAAAATAACCGACTTGGGGGAC GTCTCCTCAGCTCTCGGGATGCAAGTCACCCGCGACAGAACGACCGGACA CCTTACCATCGATCAATCAGCGTATACCAAGGGTATTCTGCAACAGTTCG TCAATGGACAAGTGCAGTTCAGCAACCACACCTGGAAGTGGTCCTGAGTT TTCCATCAAGCAACCCTTGGAAAAGCTACTGGACGCCGAGGACGTTCAGC GCTACCGAGCAATCGCTGGTTTGGTTATGTACCTGGCACAGGTGACGCGC TACGATATTCAGTACGCAGTGAACCAACTGGCTAGAGCTATAACCGCGCC CGCAACCCCACACACGGCTGCGGCGAAAAACCTCCTACGTTATCTAGCTG GGACAGTCGGCCACAACATCTGCTACAAGAACGACGGATTTAAACTGACG GCATTTCTTGATGCCAACTGGGGCAACAGCTCAGACAACTTCAAATCGAC ATCGTCGTACATCATCATGCTGGCGAAAACACCGGTCAGCTTCAAGGTTG ATCTGCAGGGCCCCACTGCCCAGTCGACCATGGAGGCGGAACTTGTGGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig43053:815..1664-

>mRNA_H-paniculata_contig43053.10994.1 ID=mRNA_H-paniculata_contig43053.10994.1|Name=mRNA_H-paniculata_contig43053.10994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig43053:815..1664- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTTCGTCGATCTTTGTATGGTCTTCGACAGTCACCTCAGAACTG
GTGGGTTACCATGGACAAATACCTGGGAGAAATTGAGTTTGTGGTTCTCA
AGTCCGACCCGTGCGTGTATGTTTACCTTTCAAAGACCGCCGACGAGCTG
ACGGCCTTGGTAACCGACAAGCACCAAAAGGTTTATACTATTCTCACATT
GTATGTGGATAATCTGCTCAGGGTTGGAAACGATGAAACGATAATAGGCA
TGCTCAAGGAGAAACTAATGACCAAATGAAGCTTCGTCGATCTTTGTATG
GTCTTCGACAGTCACCTCAGAACTGGTGGGTTACCATGGACAAATACCTG
GGAGAAATTGAGTTTGTGGTTCTCAAGTCCGACCCGTGCGTGTATGTTTA
CCTTTCAAAGACCGCCGACGAGCTGACGGCCTTGGTAACCGACAAGCACC
AAAAGGTTTATACTATTCTCACATTGTATGTGGATAATCTGCTCAGGGTT
GGAAACGATGAAACGATAATAGGCATGCTCAAGGAGAAACTAATGACCAA
TTCGTCAATGGACAAGTGCAGTTCAGCAACCACACCTGGAAGTGGTCCTG
AGTTTTCCATCAAGCAACCCTTGGAAAAGCTACTGGACGCCGAGGACGTT
CAGCGCTACCGAGCAATCGCTGGTTTGGTTATGTACCTGGCACAGGTGAC
GCGCTACGATATTCAGTACGCAGTGAACCAACTGGCTAGAGCTATAACCG
CGCCCGCAACCCCACACACGGCTGCGGCGAAAAACCTCCTACGTTATCTA
GCTGGGACAGTCGGCCACAACATCTGCTACAAGAACGACGGATTTAAACT
GACGGCATTTCTTGATGCCAACTGGGGCAACAGCTCAGACAACTTCAAAT
CGACATCGTCGTACATCATCATGCTGGCGAAAACACCGGTCAGCTTCAAG
GTTGATCTGCAGGGCCCCACTGCCCAGTCGACCATGGAGGCGGAACTTGT
GGCCTTCGTCAATGGACAAGTGCAGTTCAGCAACCACACCTGGAAGTGGT
CCTGAGTTTTCCATCAAGCAACCCTTGGAAAAGCTACTGGACGCCGAGGA
CGTTCAGCGCTACCGAGCAATCGCTGGTTTGGTTATGTACCTGGCACAGG
TGACGCGCTACGATATTCAGTACGCAGTGAACCAACTGGCTAGAGCTATA
ACCGCGCCCGCAACCCCACACACGGCTGCGGCGAAAAACCTCCTACGTTA
TCTAGCTGGGACAGTCGGCCACAACATCTGCTACAAGAACGACGGATTTA
AACTGACGGCATTTCTTGATGCCAACTGGGGCAACAGCTCAGACAACTTC
AAATCGACATCGTCGTACATCATCATGCTGGCGAAAACACCGGTCAGCTT
CAAGGTTGATCTGCAGGGCCCCACTGCCCAGTCGACCATGGAGGCGGAAC
TTGTGGCC
back to top