mRNA_H-paniculata_contig43053.10994.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 218 bits (556), Expect = 2.080e-65 Identity = 132/283 (46.64%), Postives = 160/283 (56.54%), Query Frame = 1
Query: 1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKL----------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
MKL +SLYGL QSP NW+ T+D + EI FV LKSDPCVY+Y A K+Y LTLYVD+LL GND I M+K KL +T S C S +TPG G E S QP + LLD ++ ++Y+ I G +MY+AQV RYDI YA QLAR + P+ H AAK+ LRYLAGT+ +I YK GFKL F D+NW N+ DN KSTSSY+ MLA P+SF+ LQG TA STMEAELVA
Sbjct: 65 MKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVA 333
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 219 bits (558), Expect = 4.050e-62 Identity = 133/283 (47.00%), Postives = 160/283 (56.54%), Query Frame = 1
Query: 1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKL----------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
MKL +SLYGL QSP NW+ T+D L EI FV LKSDPCVY+Y A K+Y LTLYVD+LL GND I M+K KL +T S C S +TPG G E S QP + LLD ++ ++Y+ I G +MY+AQV RYDI YA QLAR + P+ H AAK+ LRYLAGT+ +I YK GFKL F D+NW N+ DN KSTSSY+ MLA P+SF+ LQG TA STMEAELVA
Sbjct: 625 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVA 893
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 218 bits (554), Expect = 2.990e-61 Identity = 132/283 (46.64%), Postives = 160/283 (56.54%), Query Frame = 1
Query: 1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKL----------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
MKL +SLYGL QSP NW+ T+D L EI FV LKSDPCVY+Y A K+Y LTLYVD+LL GND I M+K KL +T S C S +TPG G E S QP + LLD ++ ++Y+ I G +MY+AQV RYDI YA QLAR + P+ H AAK+ LRYLAGT+ +I YK GFKL F D+NW N+ DN KSTSSY+ +LA P+SF+ LQG TA STMEAELVA
Sbjct: 1294 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVA 1562
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 211 bits (538), Expect = 3.810e-60 Identity = 122/244 (50.00%), Postives = 151/244 (61.89%), Query Frame = 1
Query: 1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRV-GNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
MKL +SL GL QSPQ+W T+D L EI F LKSD CVY+Y H +LTLYVD+LL + G G ++ M C +T G GPE S+KQP E LL+AE QRY+AI G VMYLAQVTRYDI Y +Q ARA++ P+ H AAK+LLRYL+G+ +I YK GF LTA +AN G+++DN KS SSYI+M++ P S K LQ TA ST+EAELVA
Sbjct: 445 MKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIY--------------DHNNTVVVLTLYVDDLLIIRGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVA 674
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 209 bits (531), Expect = 8.250e-60 Identity = 131/296 (44.26%), Postives = 161/296 (54.39%), Query Frame = 1
Query: 1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETII-----------------GMLKEKL------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
MKL +SLYGL QSP NW+ T+D L EI FV LKSDPCVY+Y A K+Y LTLYVD+LL GND I G L+++ +T S C S +TPG G E S QP + LLD ++ ++Y+ I G +MY+AQV RYDI YA QLAR++ P+ H AAK+ LRYLAGT+ +I YK GFKL F D+NW N+ DN KSTSSY+ MLA P+SF+ LQG TA STMEAELVA
Sbjct: 273 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVA 554
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE) HSP 1 Score: 197 bits (500), Expect = 3.310e-57 Identity = 107/243 (44.03%), Postives = 145/243 (59.67%), Query Frame = 1
Query: 1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
M+L++SLYGL Q NW+ T+D +L E V KSD CVY++ E+ ++ + ++ + TL + + ++ M +C +TPG G E S KQP + LL E+ +RY+ I G +MY+AQV RYDI YA QLAR + P+ H AAK+ LRY+AGT I YK++GFKL F D+NW N+ DN KSTS Y+ ML TPVS K +QGPTA STMEAEL+A
Sbjct: 193 MQLQKSLYGLAQIASNWFHTIDPFLVENISVPRKSDTCVYLFKMTDMGEVKLVLGMEIKRDHNQGTLTISQKAYT-----------KSILERFGMSECKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEAELIA 424
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 162 bits (410), Expect = 6.030e-42 Identity = 106/263 (40.30%), Postives = 133/263 (50.57%), Query Frame = 1
Query: 1 MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTALVTDKHQKVYTILTLYVDNLLRVGNDETIIGMLKEKL----------------------------MTNSSMDKCSS------------ATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVS 669
MKL +SLYGL QSP NW+ T+D L EI FV LKSDPCVY+Y A K+Y LTLYVD+LL GND I M+K KL +T S C S +TPG G E S QP LLD ++ ++Y+ I G MY+A +Y LAR + P+ H AAK+ LR+L GT+ +I YK GFKL F D+NW N+ DN KST+SY+ ML P+S
Sbjct: 1459 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGA------------KIY--LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQYT------WLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTASYLTMLVNAPMS 1701
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.230e-40 Identity = 99/270 (36.67%), Postives = 141/270 (52.22%), Query Frame = 1
Query: 4 KLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTAL----------------VTDKHQK------------VYTILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
KL +SLYGL QSP W ++ L + SDPCVY+++ + DELT L V+ K ++ V ++ + V +G G + M++ + +TPG G E S +QP ++LL ED QR++AI G ++YLAQ TRYD YAV+QL RA PA H AAAK+LLRYL GT I YK F+L+ F D+++G + DN +S + Y+ L +S+ Q AQ+T+EAEL A
Sbjct: 53 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRAHSDPCVYIFVRR--DELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSITGYLFFLGGGLISYGAKAQTLAAQNTLEAELQA 320
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 157 bits (396), Expect = 4.420e-40 Identity = 101/270 (37.41%), Postives = 144/270 (53.33%), Query Frame = 1
Query: 4 KLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTAL----------------VTDKHQK------------VYTILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
KL +SLYGL QSP W ++ L + +SDPCVY+++S DELT L V+ K ++ V ++ + V G G ++ M++ + +TPG G E S +QP ++LL ED QR++AI G ++YLAQ TRYD+ YAV+QL RA PA H AAAK+LLRYL GT I YK F+L+ F D+++G + DN +ST+ Y+ L +S+ Q AQ+T+EAEL A
Sbjct: 1143 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVS--GDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQA 1410
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 156 bits (394), Expect = 4.430e-40 Identity = 99/270 (36.67%), Postives = 145/270 (53.70%), Query Frame = 1
Query: 4 KLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELTAL--------VTDKHQKVYT--------------------ILTLYVDNLLRVGNDETIIGMLKEKLMTNSSMDKCSSATTPGSGPEFSIKQPLEKLLDAEDVQRYRAIAGLVMYLAQVTRYDIQYAVNQLARAITAPATPHTAAAKNLLRYLAGTVGHNICYKNDGFKLTAFLDANWGNSSDNFKSTSSYIIMLAKTPVSFKVDLQGPTAQSTMEAELVA 729
KL +SLYGL QSP W ++ L + +SDPCVY+++S DELT L +T ++++ + ++ + V G G ++ M++ + +TPG G E S +QP ++LL ED QR++AI G ++YLAQ TRYD+ YAV+QL RA PA H AAAK+LLRYL GT I YK F+L+ F D+++G + DN +ST+ Y+ L +S+ Q AQ+T+EAEL A
Sbjct: 364 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVS--GDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQA 631 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig43053.10994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig43053.10994.1 >prot_H-paniculata_contig43053.10994.1 ID=prot_H-paniculata_contig43053.10994.1|Name=mRNA_H-paniculata_contig43053.10994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp MKLRRSLYGLRQSPQNWWVTMDKYLGEIEFVVLKSDPCVYVYLSKTADELback to top mRNA from alignment at H-paniculata_contig43053:815..1664- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig43053.10994.1 ID=mRNA_H-paniculata_contig43053.10994.1|Name=mRNA_H-paniculata_contig43053.10994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=850bp|location=Sequence derived from alignment at H-paniculata_contig43053:815..1664- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig43053:815..1664- >mRNA_H-paniculata_contig43053.10994.1 ID=mRNA_H-paniculata_contig43053.10994.1|Name=mRNA_H-paniculata_contig43053.10994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig43053:815..1664- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |