mRNA_H-paniculata_contig42788.10946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.560e-51 Identity = 100/270 (37.04%), Postives = 152/270 (56.30%), Query Frame = 1
Query: 1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYVDPLARAHP-----RVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEKV-------------------------GSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
+L IPVPLKV+VVR +++P++L GAE++GM IT+R+Q Y N+ R++ GM K VS+VALWREL++ PI +AAARRAR + K L T++ + + +RKWTW TG +W+ RY LA+A ++++P GGW ++PQ L++ + ++W REE+V G + +GL + R R+GGFW R + G++ +YK C CK E + H+L +C W+E+R L LI
Sbjct: 858 YLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRKWTWGTGTGRWMNRYSHRLAKATSDDLPAKMRRP----GGWIKMNPQELSRCITAVVWEREERVAWSKTADDYKQMHFETNPLAAARAAGHATLEEGLALIIRCRVGGFWGAGRLSRRGMIHPRYKRMCPCCKRRVEEDLAHVLFDCPTWSEARNGLLAPLI 1123
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R0GP03_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GP03_9FUNG) HSP 1 Score: 120 bits (300), Expect = 2.510e-27 Identity = 74/252 (29.37%), Postives = 126/252 (50.00%), Query Frame = 1
Query: 1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYVDPLARAHPRVQKPEGYGGGWRLVDPQSLAKFVKKLI-WLREEKVGS-----------PLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
FL N +IP+ L+ +++RS+++P +G E++GM+K TS++Q + RL+IG KT+ + L EL++ + A R RA K L T++ ++ +R TW +G +W KR+ D A G + +D ++ A + WL+ +G P KG+ + + R G F T + A ++ KY C FCK + E++EHL+LECS+W + R+ LG+ +
Sbjct: 696 FLGNKNIPIALRATLIRSVLIPIATYGGELFGMSKARTSKLQTVIDTASRLVIGS-GKTIALH-RLREELKLTTVYTKTAVARERAFYKWPTLKTWITDLIEYPMKSRLDTWVSGTRRWTKRFCDHSAP-----------GETLKYLDRRTRANEYSVISNWLKSSGIGRIRNVTGLELIFPENSKGIQEIIKIRTGLFRTAMKLAKSKIIDRKYLQLCPFCKNNVPESVEHLILECSKWTQQRQEHLGEFL 934
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG) HSP 1 Score: 114 bits (285), Expect = 2.700e-25 Identity = 68/250 (27.20%), Postives = 124/250 (49.60%), Query Frame = 1
Query: 1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV---DPLARAHP-RVQKPEGYGGGWRLVDPQSLAKFVKK------LIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
FL IP +++++VR++++P + +G EI+GM+ +QK + RL+ G+ T + + EL++ I+ + R R +K G T++ E+ + NR TW +G I+W KR++ D A R +K D + ++V K W+ E + P +G+ +++ R+G + T + A L+ E++KT C FC + +T+EH+LL C +W R+ +G I
Sbjct: 1425 FLSRRDIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDAARLVAGVGRSTALQRIR--NELKIDEINTRVSVARERGHTKWAGSKTWISELINQPLKNRLDTWVSGTIRWKKRFLKGADSKTTAQALRARKIRN--------DHSKITQWVMKNNLGLTSNWMGLE-LAYPEHARGIRLMAKVRMGAYMTAKSLANSRLILEEFKTKCPFCNGSEADTVEHMLLRCQKWNSQRQNCIGAFI 1663
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG) HSP 1 Score: 112 bits (281), Expect = 8.570e-25 Identity = 67/247 (27.13%), Postives = 121/247 (48.99%), Query Frame = 1
Query: 1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV-----DPLARA--HPRVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
FL +P ++ +++R++++P + +G EI+GM+ S +QK + RL+ G+ T +S L E+++ I A+ R R +K T++ E+ + F NR TW +G ++W KR++ + A+A +++ W + + L W+ E + P +G+ L++ R+G F T + A + E YK C FC + ET+EH+LL C +W R +G I
Sbjct: 739 FLSRKDVPTAMRAALIRTVLIPILCYGCEIFGMSAVRCSTLQKVADDATRLVAGVGRSTALSR--LRSEMKIDDIFTRASVARERGHNKWTTSKTWITELINKPFKNRLDTWVSGTVRWKKRFLKGAGNNTTAQALRARKIRNDHSKITQWVIKNNLGLTSN-----WMGLE-LAYPEQARGIRLLAKVRMGAFMTAQSLANSRFISEDYKLKCPFCNVSEAETVEHMLLRCQKWNSQRSNCIGTFI 977
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG) HSP 1 Score: 110 bits (276), Expect = 4.100e-24 Identity = 66/247 (26.72%), Postives = 116/247 (46.96%), Query Frame = 1
Query: 1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYVDPL-------ARAHPRVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
FL IP ++ +++R++++P + +G EI+GM+ +QK + RL+ G+ T + L EL++ I + R R K L T++ ++ F NR TW +G ++W KR++ A +++ W + + L K W+ E + P +G+ L++ R+G F T + A + E YK C FC + ET+EH+LL C +W+ R +G I
Sbjct: 977 FLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAARLVAGVGRSTALQR--LRNELKIEDIFTRVSVARERGHKKWVTLKTWISDLISQPFKNRLDTWVSGTVRWKKRFLKGAGNKTTAQALRARKIRNDHSKITEWVIRNNLGL-----KSNWMGLE-LAYPEHARGIRLLAKVRMGAFMTAQSLANSRFISEDYKLKCPFCNVSEAETVEHMLLRCQKWSSQRSNCIGAFI 1215
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG) HSP 1 Score: 108 bits (271), Expect = 1.830e-23 Identity = 64/250 (25.60%), Postives = 120/250 (48.00%), Query Frame = 1
Query: 1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV----DPLARAHPRVQKPEGYGGGWRLVDPQSLAKFVKK------LIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
FL IP ++V+++R++++P + +G EI+GM+ + +QK + RL+ G+ T + L EL++ I+ + R R +K T++ E+ F NR TW +G ++W +R++ + R +K D + ++V + W+ E + P +G+ L++ R+G F T + A + + YK C FC + +T+EH+LL C +W R+ +G I
Sbjct: 801 FLSRKDIPTAMRVALIRTVLIPILCYGGEIFGMSATRSGTLQKVADDATRLVAGVGKSTALQR--LRNELKIDDINTRVSVARERGHTKWASSKTWISELIKQPFKNRLDTWVSGTVRWKRRFLKGAENKTTAQALRARKIRN--------DHSKITEWVTRNNLGLTSNWMGLE-LAYPEHARGIRLLAKMRMGAFMTAQSLANSRFISDDYKLKCPFCNGSEADTVEHMLLRCQKWNSQRQNCIGAFI 1039
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1X0A5_9FUNG (Uncharacterized protein n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X0A5_9FUNG) HSP 1 Score: 105 bits (263), Expect = 5.160e-23 Identity = 65/250 (26.00%), Postives = 122/250 (48.80%), Query Frame = 1
Query: 1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV---DPLARAHP-RVQKPEGYGGGWRLVDPQSLAKFVKK------LIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
FL +IP +++++VR++++P + +G EI+GM+ +QK + RL+ G+ T + + EL++ I+ + R +K G T++ E+ + NR TW +G I+W KR++ D A R +K D + + ++V K W+ E + P +G+ + + R+G + T + A + E++KT C FC + +T+E +LL C +W+ R +G I
Sbjct: 68 FLSRRNIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDEARLVAGVGRSTALQRIR--NELKIYEINTRVSIAREGGHTKWAGSKTWISELINQPLKNRLDTWVSGTIRWKKRFLKGADSKTTAQALRARKIRN--------DHRKINQWVMKNNLGLTCNWMGLE-LAYPEHARGIRLMEKVRMGAYMTAKSLANSRFILEEFKTKCQFCNGSEADTVELMLLRCHKWSSQRSNCIGAFI 306
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1X4V9_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X4V9_9FUNG) HSP 1 Score: 104 bits (259), Expect = 7.250e-22 Identity = 63/247 (25.51%), Postives = 115/247 (46.56%), Query Frame = 1
Query: 1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYVD-----PLARA--HPRVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
FL IP ++ +++R++++P + +G EI+GM+ +QK + RL+ G+ T + L EL++ + + R R +K T++ ++ NR TW +G ++W KR++ ARA +++ W + + L W+ E + P +G+ L++ R+G F T + A + E YK C FC + +T+EH+LL C +W R +G I
Sbjct: 779 FLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAARLVAGVGRSTALQR--LRNELKIEDVFTRVSVARERGHNKWTTSKTWISDLITQPLKNRLDTWVSGTVRWEKRFLKGSENKTTARALRSRKIRNDNSKITQWVIENNLRLTSN-----WMGLE-LAYPEHARGIRLLAKVRMGAFMTAQSLANSRFITEGYKVKCPFCNGSEADTVEHMLLRCQKWNSQRSNCIGAFI 1017
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1Y1S8L6_9MICR (LIN1 n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S8L6_9MICR) HSP 1 Score: 102 bits (254), Expect = 3.490e-21 Identity = 72/243 (29.63%), Postives = 117/243 (48.15%), Query Frame = 1
Query: 4 LRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV-DPLARAHPRVQKPEGYGGGWRLVDPQSLAKFVKKL-------IWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWL 708
L T +P K+ ++ + ++P +L+GAE++GMN ++Q+ L + M VS L E A ++ +AA RR RA K L T++ + + RK W T + +W K Y+ + L R++ E Y G D ++ K L +W+ + + P + + L + R RLG F +R C ++ KY C C+ D+ ETIEHLLL C RW ++R +L
Sbjct: 1145 LCGTRVPTYFKLKLIHARLMPVLLYGAELWGMNTNNCRKLQQ--TLVGALRMAMRVGRNVSVGRLLAETGTALVAESAAKRRHRATRKFPTLKTWIAILLKNPYHGRKRVWSTNSQQWTKHYLKECLTENSKRLE--ELYAGRQLKADKTLATQWAKDLKLDTEPPVWI-QLGLEQPKLARALSEVGRIRLGVFPIGKRLVYCKVLDRKYLARCPACEQDEPETIEHLLLTCPRWDDARTRYL 1382
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO) HSP 1 Score: 92.8 bits (229), Expect = 6.520e-18 Identity = 64/249 (25.70%), Postives = 114/249 (45.78%), Query Frame = 1
Query: 4 LRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV--DPLARAHPRVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEK----VGSPL-----------MGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRK 699
+ IP+P++V++++S+++P G+E+YGM+ + T+ +Q+ ++ R M + + E+++ I + AA R RA K T + +V F K TW TG +W++R + D L V+K E D + K+ + +RE++ GS + + +G L++ R G F R A G + +YK C C+ E HLL CS+W + R+
Sbjct: 557 ISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVIDKAVRC--AMACPANYCRLTAYEEIRIECIDIRAAKARTRAFIKWRNSRTTISKVMKTDFKCPKTTWYTGTARWIRRLLKNDTLNSTQEGVKKVE---------DALTTGKYARSKSKIREKRRKLVFGSSISNWKETVKNYRVNRGWHVLTKIRTGTFMFGYRLAKYGRISSEYKKKCIACEKHGREDGIHLLWHCSKWEKERE 794 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42788.10946.1 >prot_H-paniculata_contig42788.10946.1 ID=prot_H-paniculata_contig42788.10946.1|Name=mRNA_H-paniculata_contig42788.10946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRback to top mRNA from alignment at H-paniculata_contig42788:866..1660+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42788.10946.1 ID=mRNA_H-paniculata_contig42788.10946.1|Name=mRNA_H-paniculata_contig42788.10946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig42788:866..1660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42788:866..1660+ >mRNA_H-paniculata_contig42788.10946.1 ID=mRNA_H-paniculata_contig42788.10946.1|Name=mRNA_H-paniculata_contig42788.10946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at H-paniculata_contig42788:866..1660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |