mRNA_H-paniculata_contig42788.10946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42788.10946.1
Unique NamemRNA_H-paniculata_contig42788.10946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.560e-51
Identity = 100/270 (37.04%), Postives = 152/270 (56.30%), Query Frame = 1
Query:    1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYVDPLARAHP-----RVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEKV-------------------------GSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
            +L    IPVPLKV+VVR +++P++L GAE++GM   IT+R+Q Y N+  R++ GM  K  VS+VALWREL++ PI  +AAARRAR + K   L T++  +    + +RKWTW TG  +W+ RY   LA+A       ++++P    GGW  ++PQ L++ +  ++W REE+V                         G   + +GL  + R R+GGFW   R +  G++  +YK  C  CK    E + H+L +C  W+E+R   L  LI
Sbjct:  858 YLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRKWTWGTGTGRWMNRYSHRLAKATSDDLPAKMRRP----GGWIKMNPQELSRCITAVVWEREERVAWSKTADDYKQMHFETNPLAAARAAGHATLEEGLALIIRCRVGGFWGAGRLSRRGMIHPRYKRMCPCCKRRVEEDLAHVLFDCPTWSEARNGLLAPLI 1123          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R0GP03_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GP03_9FUNG)

HSP 1 Score: 120 bits (300), Expect = 2.510e-27
Identity = 74/252 (29.37%), Postives = 126/252 (50.00%), Query Frame = 1
Query:    1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYVDPLARAHPRVQKPEGYGGGWRLVDPQSLAKFVKKLI-WLREEKVGS-----------PLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
            FL N +IP+ L+ +++RS+++P   +G E++GM+K  TS++Q   +   RL+IG   KT+  +  L  EL++  +    A  R RA  K   L T++ ++      +R  TW +G  +W KR+ D  A            G   + +D ++ A     +  WL+   +G            P   KG+  + + R G F T  + A   ++  KY   C FCK +  E++EHL+LECS+W + R+  LG+ +
Sbjct:  696 FLGNKNIPIALRATLIRSVLIPIATYGGELFGMSKARTSKLQTVIDTASRLVIGS-GKTIALH-RLREELKLTTVYTKTAVARERAFYKWPTLKTWITDLIEYPMKSRLDTWVSGTRRWTKRFCDHSAP-----------GETLKYLDRRTRANEYSVISNWLKSSGIGRIRNVTGLELIFPENSKGIQEIIKIRTGLFRTAMKLAKSKIIDRKYLQLCPFCKNNVPESVEHLILECSKWTQQRQEHLGEFL 934          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 2.700e-25
Identity = 68/250 (27.20%), Postives = 124/250 (49.60%), Query Frame = 1
Query:    1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV---DPLARAHP-RVQKPEGYGGGWRLVDPQSLAKFVKK------LIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
            FL    IP  +++++VR++++P + +G EI+GM+      +QK  +   RL+ G+   T +  +    EL++  I+   +  R R  +K  G  T++ E+ +    NR  TW +G I+W KR++   D    A   R +K           D   + ++V K        W+  E +  P   +G+  +++ R+G + T +  A   L+ E++KT C FC   + +T+EH+LL C +W   R+  +G  I
Sbjct: 1425 FLSRRDIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDAARLVAGVGRSTALQRIR--NELKIDEINTRVSVARERGHTKWAGSKTWISELINQPLKNRLDTWVSGTIRWKKRFLKGADSKTTAQALRARKIRN--------DHSKITQWVMKNNLGLTSNWMGLE-LAYPEHARGIRLMAKVRMGAYMTAKSLANSRLILEEFKTKCPFCNGSEADTVEHMLLRCQKWNSQRQNCIGAFI 1663          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 112 bits (281), Expect = 8.570e-25
Identity = 67/247 (27.13%), Postives = 121/247 (48.99%), Query Frame = 1
Query:    1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV-----DPLARA--HPRVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
            FL    +P  ++ +++R++++P + +G EI+GM+    S +QK  +   RL+ G+   T +S   L  E+++  I   A+  R R  +K     T++ E+ +  F NR  TW +G ++W KR++     +  A+A    +++        W + +   L        W+  E +  P   +G+  L++ R+G F T +  A    + E YK  C FC   + ET+EH+LL C +W   R   +G  I
Sbjct:  739 FLSRKDVPTAMRAALIRTVLIPILCYGCEIFGMSAVRCSTLQKVADDATRLVAGVGRSTALSR--LRSEMKIDDIFTRASVARERGHNKWTTSKTWITELINKPFKNRLDTWVSGTVRWKKRFLKGAGNNTTAQALRARKIRNDHSKITQWVIKNNLGLTSN-----WMGLE-LAYPEQARGIRLLAKVRMGAFMTAQSLANSRFISEDYKLKCPFCNVSEAETVEHMLLRCQKWNSQRSNCIGTFI 977          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG)

HSP 1 Score: 110 bits (276), Expect = 4.100e-24
Identity = 66/247 (26.72%), Postives = 116/247 (46.96%), Query Frame = 1
Query:    1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYVDPL-------ARAHPRVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
            FL    IP  ++ +++R++++P + +G EI+GM+      +QK  +   RL+ G+   T +    L  EL++  I    +  R R   K   L T++ ++    F NR  TW +G ++W KR++          A    +++        W + +   L     K  W+  E +  P   +G+  L++ R+G F T +  A    + E YK  C FC   + ET+EH+LL C +W+  R   +G  I
Sbjct:  977 FLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAARLVAGVGRSTALQR--LRNELKIEDIFTRVSVARERGHKKWVTLKTWISDLISQPFKNRLDTWVSGTVRWKKRFLKGAGNKTTAQALRARKIRNDHSKITEWVIRNNLGL-----KSNWMGLE-LAYPEHARGIRLLAKVRMGAFMTAQSLANSRFISEDYKLKCPFCNVSEAETVEHMLLRCQKWSSQRSNCIGAFI 1215          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 1.830e-23
Identity = 64/250 (25.60%), Postives = 120/250 (48.00%), Query Frame = 1
Query:    1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV----DPLARAHPRVQKPEGYGGGWRLVDPQSLAKFVKK------LIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
            FL    IP  ++V+++R++++P + +G EI+GM+   +  +QK  +   RL+ G+   T +    L  EL++  I+   +  R R  +K     T++ E+    F NR  TW +G ++W +R++    +       R +K           D   + ++V +        W+  E +  P   +G+  L++ R+G F T +  A    + + YK  C FC   + +T+EH+LL C +W   R+  +G  I
Sbjct:  801 FLSRKDIPTAMRVALIRTVLIPILCYGGEIFGMSATRSGTLQKVADDATRLVAGVGKSTALQR--LRNELKIDDINTRVSVARERGHTKWASSKTWISELIKQPFKNRLDTWVSGTVRWKRRFLKGAENKTTAQALRARKIRN--------DHSKITEWVTRNNLGLTSNWMGLE-LAYPEHARGIRLLAKMRMGAFMTAQSLANSRFISDDYKLKCPFCNGSEADTVEHMLLRCQKWNSQRQNCIGAFI 1039          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1X0A5_9FUNG (Uncharacterized protein n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X0A5_9FUNG)

HSP 1 Score: 105 bits (263), Expect = 5.160e-23
Identity = 65/250 (26.00%), Postives = 122/250 (48.80%), Query Frame = 1
Query:    1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV---DPLARAHP-RVQKPEGYGGGWRLVDPQSLAKFVKK------LIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
            FL   +IP  +++++VR++++P + +G EI+GM+      +QK  +   RL+ G+   T +  +    EL++  I+   +  R    +K  G  T++ E+ +    NR  TW +G I+W KR++   D    A   R +K           D + + ++V K        W+  E +  P   +G+  + + R+G + T +  A    + E++KT C FC   + +T+E +LL C +W+  R   +G  I
Sbjct:   68 FLSRRNIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDEARLVAGVGRSTALQRIR--NELKIYEINTRVSIAREGGHTKWAGSKTWISELINQPLKNRLDTWVSGTIRWKKRFLKGADSKTTAQALRARKIRN--------DHRKINQWVMKNNLGLTCNWMGLE-LAYPEHARGIRLMEKVRMGAYMTAKSLANSRFILEEFKTKCQFCNGSEADTVELMLLRCHKWSSQRSNCIGAFI 306          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1R1X4V9_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X4V9_9FUNG)

HSP 1 Score: 104 bits (259), Expect = 7.250e-22
Identity = 63/247 (25.51%), Postives = 115/247 (46.56%), Query Frame = 1
Query:    1 FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYVD-----PLARA--HPRVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI 720
            FL    IP  ++ +++R++++P + +G EI+GM+      +QK  +   RL+ G+   T +    L  EL++  +    +  R R  +K     T++ ++      NR  TW +G ++W KR++        ARA    +++        W + +   L        W+  E +  P   +G+  L++ R+G F T +  A    + E YK  C FC   + +T+EH+LL C +W   R   +G  I
Sbjct:  779 FLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQKVADDAARLVAGVGRSTALQR--LRNELKIEDVFTRVSVARERGHNKWTTSKTWISDLITQPLKNRLDTWVSGTVRWEKRFLKGSENKTTARALRSRKIRNDNSKITQWVIENNLRLTSN-----WMGLE-LAYPEHARGIRLLAKVRMGAFMTAQSLANSRFITEGYKVKCPFCNGSEADTVEHMLLRCQKWNSQRSNCIGAFI 1017          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: A0A1Y1S8L6_9MICR (LIN1 n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S8L6_9MICR)

HSP 1 Score: 102 bits (254), Expect = 3.490e-21
Identity = 72/243 (29.63%), Postives = 117/243 (48.15%), Query Frame = 1
Query:    4 LRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV-DPLARAHPRVQKPEGYGGGWRLVDPQSLAKFVKKL-------IWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWL 708
            L  T +P   K+ ++ + ++P +L+GAE++GMN     ++Q+       L + M     VS   L  E   A ++ +AA RR RA  K   L T++  +    +  RK  W T + +W K Y+ + L     R++  E Y G     D     ++ K L       +W+ +  +  P + + L  + R RLG F   +R   C ++  KY   C  C+ D+ ETIEHLLL C RW ++R  +L
Sbjct: 1145 LCGTRVPTYFKLKLIHARLMPVLLYGAELWGMNTNNCRKLQQ--TLVGALRMAMRVGRNVSVGRLLAETGTALVAESAAKRRHRATRKFPTLKTWIAILLKNPYHGRKRVWSTNSQQWTKHYLKECLTENSKRLE--ELYAGRQLKADKTLATQWAKDLKLDTEPPVWI-QLGLEQPKLARALSEVGRIRLGVFPIGKRLVYCKVLDRKYLARCPACEQDEPETIEHLLLTCPRWDDARTRYL 1382          
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO)

HSP 1 Score: 92.8 bits (229), Expect = 6.520e-18
Identity = 64/249 (25.70%), Postives = 114/249 (45.78%), Query Frame = 1
Query:    4 LRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCRLMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEVAHAKFTNRKWTWCTGAIKWVKRYV--DPLARAHPRVQKPEGYGGGWRLVDPQSLAKFVKKLIWLREEK----VGSPL-----------MGKGLCALSRFRLGGFWTLRRFAVCGLVPEKYKTYCSFCKADKGETIEHLLLECSRWAESRK 699
            +    IP+P++V++++S+++P    G+E+YGM+ + T+ +Q+  ++  R    M        +  + E+++  I + AA  R RA  K     T + +V    F   K TW TG  +W++R +  D L      V+K E         D  +  K+ +    +RE++     GS +           + +G   L++ R G F    R A  G +  +YK  C  C+    E   HLL  CS+W + R+
Sbjct:  557 ISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVIDKAVRC--AMACPANYCRLTAYEEIRIECIDIRAAKARTRAFIKWRNSRTTISKVMKTDFKCPKTTWYTGTARWIRRLLKNDTLNSTQEGVKKVE---------DALTTGKYARSKSKIREKRRKLVFGSSISNWKETVKNYRVNRGWHVLTKIRTGTFMFGYRLAKYGRISSEYKKKCIACEKHGREDGIHLLWHCSKWEKERE 794          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42788.10946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE1.560e-5137.04Reverse transcriptase domain-containing protein n=... [more]
A0A1R0GP03_9FUNG2.510e-2729.37RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1YP44_9FUNG2.700e-2527.20LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A1R1Y7R2_9FUNG8.570e-2527.13Putative RNA-directed DNA polymerase from transpos... [more]
A0A1R1X7T5_9FUNG4.100e-2426.72RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1YAQ4_9FUNG1.830e-2325.60RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1X0A5_9FUNG5.160e-2326.00Uncharacterized protein n=1 Tax=Smittium culicis T... [more]
A0A1R1X4V9_9FUNG7.250e-2225.51Putative RNA-directed DNA polymerase from transpos... [more]
A0A1Y1S8L6_9MICR3.490e-2129.63LIN1 n=1 Tax=Enterospora canceri TaxID=1081671 Rep... [more]
L7JX89_TRAHO6.520e-1825.70RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42788contigH-paniculata_contig42788:866..1660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size720
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930300.864058-CDS-H-paniculata_contig42788:865..13651622930300.864058-CDS-H-paniculata_contig42788:865..1365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42788 866..1365 +
1691481231.905873-CDS-H-paniculata_contig42788:865..13651691481231.905873-CDS-H-paniculata_contig42788:865..1365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42788 866..1365 +
1622930300.88229-CDS-H-paniculata_contig42788:1440..16601622930300.88229-CDS-H-paniculata_contig42788:1440..1660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42788 1441..1660 +
1691481231.9186778-CDS-H-paniculata_contig42788:1440..16601691481231.9186778-CDS-H-paniculata_contig42788:1440..1660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42788 1441..1660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42788.10946.1prot_H-paniculata_contig42788.10946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42788 866..1660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42788.10946.1

>prot_H-paniculata_contig42788.10946.1 ID=prot_H-paniculata_contig42788.10946.1|Name=mRNA_H-paniculata_contig42788.10946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp
FLRNTSIPVPLKVSVVRSIVVPQMLHGAEIYGMNKKITSRMQKYPNQTCR
LMIGMIAKTLVSNVALWRELQMAPISVNAAARRARAVSKCEGLTTYVKEV
AHAKFTNRKWTWCTGAIKWVKRYVDPLARAHPRVQKPEGYGGGWRLVDPQ
SLAKFVKKLIWLREEKVGSPLMGKGLCALSRFRLGGFWTLRRFAVCGLVP
EKYKTYCSFCKADKGETIEHLLLECSRWAESRKTWLGDLI
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mRNA from alignment at H-paniculata_contig42788:866..1660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42788.10946.1 ID=mRNA_H-paniculata_contig42788.10946.1|Name=mRNA_H-paniculata_contig42788.10946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig42788:866..1660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTTAGGAATACGTCCATCCCCGTGCCCCTAAAAGTCTCAGTTGTTCG ATCGATTGTAGTCCCGCAAATGTTGCATGGAGCAGAAATTTACGGGATGA ACAAGAAGATCACCTCGCGGATGCAAAAGTACCCAAATCAGACATGCCGC CTGATGATCGGAATGATCGCAAAGACCCTCGTCTCTAATGTGGCTCTCTG GCGGGAACTGCAGATGGCGCCGATCTCTGTAAACGCCGCCGCAAGAAGGG CCCGTGCCGTTTCGAAATGCGAGGGCCTGACAACGTATGTCAAGGAAGTC GCACACGCCAAGTTCACGAACAGAAAGTGGACCTGGTGCACGGGCGCCAT CAAATGGGTTAAAAGATATGTTGACCCCTTGGCCAGAGCTCATCCGCGTG TCCAGAAACCTGAAGGATACGGGGGAGGGTGGAGATTAGTGGACCCCCAA AGCCTAGCTAAATTCGTGAAGAAACTGATCTGGTTGAGGGAAGAAAAGGT GTACAAATCGAAAACTAGTGTAAGATACATCGAGACTCGTTTTGAGACTA ATAGTTGAGCAAGAGTACGCGGAAGCGGCTCACCCCTAATGGGAAAGGGG TTATGTGCATTAAGTAGGTTTCGGCTTGGAGGATTTTGGACGTTACGCAG ATTTGCGGTGTGTGGCCTTGTACCTGAAAAATACAAGACTTACTGCTCAT TTTGCAAGGCGGACAAAGGGGAGACCATTGAACATCTACTACTTGAATGT AGTAGGTGGGCAGAGAGTCGCAAAACTTGGTTGGGCGATCTGATC
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Coding sequence (CDS) from alignment at H-paniculata_contig42788:866..1660+

>mRNA_H-paniculata_contig42788.10946.1 ID=mRNA_H-paniculata_contig42788.10946.1|Name=mRNA_H-paniculata_contig42788.10946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at H-paniculata_contig42788:866..1660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTTAGGAATACGTCCATCCCCGTGCCCCTAAAAGTCTCAGTTGTTCG
ATCGATTGTAGTCCCGCAAATGTTGCATGGAGCAGAAATTTACGGGATGA
ACAAGAAGATCACCTCGCGGATGCAAAAGTACCCAAATCAGACATGCCGC
CTGATGATCGGAATGATCGCAAAGACCCTCGTCTCTAATGTGGCTCTCTG
GCGGGAACTGCAGATGGCGCCGATCTCTGTAAACGCCGCCGCAAGAAGGG
CCCGTGCCGTTTCGAAATGCGAGGGCCTGACAACGTATGTCAAGGAAGTC
GCACACGCCAAGTTCACGAACAGAAAGTGGACCTGGTGCACGGGCGCCAT
CAAATGGGTTAAAAGATATGTTGACCCCTTGGCCAGAGCTCATCCGCGTG
TCCAGAAACCTGAAGGATACGGGGGAGGGTGGAGATTAGTGGACCCCCAA
AGCCTAGCTAAATTCGTGAAGAAACTGATCTGGTTGAGGGAAGAAAAGGT
TTCCTTAGGAATACGTCCATCCCCGTGCCCCTAAAAGTCTCAGTTGTTCG
ATCGATTGTAGTCCCGCAAATGTTGCATGGAGCAGAAATTTACGGGATGA
ACAAGAAGATCACCTCGCGGATGCAAAAGTACCCAAATCAGACATGCCGC
CTGATGATCGGAATGATCGCAAAGACCCTCGTCTCTAATGTGGCTCTCTG
GCGGGAACTGCAGATGGCGCCGATCTCTGTAAACGCCGCCGCAAGAAGGG
CCCGTGCCGTTTCGAAATGCGAGGGCCTGACAACGTATGTCAAGGAAGTC
GCACACGCCAAGTTCACGAACAGAAAGTGGACCTGGTGCACGGGCGCCAT
CAAATGGGTTAAAAGATATGTTGACCCCTTGGCCAGAGCTCATCCGCGTG
TCCAGAAACCTGAAGGATACGGGGGAGGGTGGAGATTAGTGGACCCCCAA
AGCCTAGCTAAATTCGTGAAGAAACTGATCTGGTTGAGGGAAGAAAAGGT
CGGCTCACCCCTAATGGGAAAGGGGTTATGTGCATTAAGTAGGTTTCGGC
TTGGAGGATTTTGGACGTTACGCAGATTTGCGGTGTGTGGCCTTGTACCT
GAAAAATACAAGACTTACTGCTCATTTTGCAAGGCGGACAAAGGGGAGAC
CATTGAACATCTACTACTTGAATGTAGTAGGTGGGCAGAGAGTCGCAAAA
CTTGGTTGGGCGATCTGATCCGGCTCACCCCTAATGGGAAAGGGGTTATG
TGCATTAAGTAGGTTTCGGCTTGGAGGATTTTGGACGTTACGCAGATTTG
CGGTGTGTGGCCTTGTACCTGAAAAATACAAGACTTACTGCTCATTTTGC
AAGGCGGACAAAGGGGAGACCATTGAACATCTACTACTTGAATGTAGTAG
GTGGGCAGAGAGTCGCAAAACTTGGTTGGGCGATCTGATC
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