mRNA_H-paniculata_contig42722.10934.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42722.10934.1
Unique NamemRNA_H-paniculata_contig42722.10934.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: A0A6H5KPJ7_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.140e-30
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1
Query:   16 ASVAEVFDYWAHASAIDIGENMTAPDNFESRAQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ 204
            ASVAEVFDYWAHASAIDIGE+M+APDNFES+AQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ
Sbjct:   27 ASVAEVFDYWAHASAIDIGEDMSAPDNFESQAQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ 89          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: D8LH95_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH95_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.490e-29
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1
Query:   16 ASVAEVFDYWAHASAIDIGENMTAPDNFESRAQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ 204
            ASVAEVFDYWAHASAIDIGE+M+APDNFES+AQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ
Sbjct:  155 ASVAEVFDYWAHASAIDIGEDMSAPDNFESQAQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ 217          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: A0A835Z3Z5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.200e-13
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 LFSCLA-SVAEVFDYWAHASAIDIGENMTAPDNFESRAQAVVTFVAGAIAGVVSRTATAPFDRLK 192
            L  C A S+ +VFDYWAHASAIDIGE + APDNF+          A A AGVVSRTATAP DRLK
Sbjct:  423 LLLCTAGSIEKVFDYWAHASAIDIGETLAAPDNFQ----------ACAFAGVVSRTATAPMDRLK 477          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: G4VEN7_SCHMA (Mitochondrial carrier protein-related n=11 Tax=Schistosoma TaxID=6181 RepID=G4VEN7_SCHMA)

HSP 1 Score: 72.0 bits (175), Expect = 4.250e-13
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 LFSCLASVAEVFDYWAHASAIDIGENMTAPDNF----ESRAQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ 204
            LFS  + + E+F YW HASAIDIGENM  PD+F    +    A  T V+G IAG +SRT TAP DR+K   Q
Sbjct:  142 LFSGTSKIDEIFRYWRHASAIDIGENMCVPDDFTEEEKKSGDAWKTLVSGGIAGCISRTVTAPLDRIKLTWQ 213          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: A0A504YTN4_FASGI (Calcium-binding mitochondrial carrier protein SCaMC-1 n=3 Tax=Fasciolidae TaxID=27843 RepID=A0A504YTN4_FASGI)

HSP 1 Score: 71.2 bits (173), Expect = 7.940e-13
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 LFSCLASVAEVFDYWAHASAIDIGENMTAPDNF----ESRAQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ 204
            LFS  + + E+F YW  ASAIDIGE+M  PD+F    +   QA  T VAG IAG VSRT TAP DR+K   Q
Sbjct:  144 LFSGTSRIDEIFQYWKRASAIDIGEDMLVPDDFTEEEKKTGQAWKTLVAGGIAGCVSRTVTAPLDRIKLFWQ 215          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: H2KQQ3_CLOSI (Calcium-binding mitochondrial carrier protein SCaMC-1 n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=H2KQQ3_CLOSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.030e-12
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 LFSCLASVAEVFDYWAHASAIDIGENMTAPDNF----ESRAQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ 204
            LFS  + + E+F YW  ASAIDIGE+M  PD+F    +    A  T VAG IAG VSRTATAP DR+K   Q
Sbjct:  144 LFSGTSKIDEIFRYWKRASAIDIGEDMLVPDDFTEEEKKSGDAWKTLVAGGIAGCVSRTATAPLDRIKLTWQ 215          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: A0A6J2W119_CHACN (calcium-binding mitochondrial carrier protein SCaMC-3-like n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W119_CHACN)

HSP 1 Score: 69.7 bits (169), Expect = 2.780e-12
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 LFSCLASVAEVFDYWAHASAIDIGENMTAPDNFESRAQ--AVV--TFVAGAIAGVVSRTATAPFDRLKTLLQV 207
            LF+ L S+ +V  YW HA  +DIGE++T PD F  R +   VV    VAGA+AG VSRT TAP DRLK  LQV
Sbjct:  157 LFNPLHSMEDVAHYWKHALMLDIGEHLTVPDEFSERERRSGVVWRQLVAGAMAGAVSRTGTAPLDRLKVFLQV 229          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: A0A1S3WEE9_ERIEU (calcium-binding mitochondrial carrier protein SCaMC-3 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3WEE9_ERIEU)

HSP 1 Score: 68.9 bits (167), Expect = 4.140e-12
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 LFSCLASVAEVFDYWAHASAIDIGENMTAPDNFESRAQAVVTF----VAGAIAGVVSRTATAPFDRLKTLLQV 207
            L   L +V +V  +W H++ +DIGE +T PD F  R +   T+    VAGA+AG VSRT TAP DRLK L+QV
Sbjct:   13 LLHSLENVEDVLYFWKHSTVLDIGECLTVPDEFSEREKMTGTWWKQLVAGAVAGAVSRTGTAPLDRLKVLMQV 85          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: A0A5J4N9L1_9TREM (Uncharacterized protein n=2 Tax=Paragonimus TaxID=34503 RepID=A0A5J4N9L1_9TREM)

HSP 1 Score: 68.9 bits (167), Expect = 5.070e-12
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 LFSCLASVAEVFDYWAHASAIDIGENMTAPDNF--ESR--AQAVVTFVAGAIAGVVSRTATAPFDRLKTLLQ 204
            LFS  + + E+F YW  AS IDIGE+M  PD+F  E R   +A  T VAG IAG VSRTATAP DR+K   Q
Sbjct:  142 LFSGTSRIDEIFHYWRRASVIDIGEDMLVPDDFTEEERKSGEAWKTLVAGGIAGCVSRTATAPLDRIKLTWQ 213          
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Match: A0A183VP30_TRIRE (Uncharacterized protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183VP30_TRIRE)

HSP 1 Score: 68.6 bits (166), Expect = 7.100e-12
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 LFSCLASVAEVFDYWAHASAIDIGENMTAPDNF----ESRAQAVVTFVAGAIAGVVSRTATAPFDRLK 192
            LFS  + + E+F YW H +AIDIGENM  PD+F    +    A  T V+G IAG +SRT TAP DR+K
Sbjct:  120 LFSGTSKIDEIFRYWRHTTAIDIGENMCVPDDFTEEEKKSGDAWKTLVSGGIAGCISRTVTAPLDRIK 187          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42722.10934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPJ7_9PHAE3.140e-3095.24EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LH95_ECTSI1.490e-2995.24N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A835Z3Z5_9STRA3.200e-1363.08Mitochondrial carrier domain-containing protein n=... [more]
G4VEN7_SCHMA4.250e-1352.78Mitochondrial carrier protein-related n=11 Tax=Sch... [more]
A0A504YTN4_FASGI7.940e-1354.17Calcium-binding mitochondrial carrier protein SCaM... [more]
H2KQQ3_CLOSI2.030e-1254.17Calcium-binding mitochondrial carrier protein SCaM... [more]
A0A6J2W119_CHACN2.780e-1254.79calcium-binding mitochondrial carrier protein SCaM... [more]
A0A1S3WEE9_ERIEU4.140e-1249.32calcium-binding mitochondrial carrier protein SCaM... [more]
A0A5J4N9L1_9TREM5.070e-1255.56Uncharacterized protein n=2 Tax=Paragonimus TaxID=... [more]
A0A183VP30_TRIRE7.100e-1251.47Uncharacterized protein n=1 Tax=Trichobilharzia re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42722contigH-paniculata_contig42722:838..1573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue6.7e-25
Seed eggNOG ortholog2880.D8LH95
KEGG koko:K14684
KEGG TC2.A.29.23
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ATP transmembrane transporter activity
EggNOG OGsKOG0036@1,KOG0036@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930299.546418-CDS-H-paniculata_contig42722:837..9511622930299.546418-CDS-H-paniculata_contig42722:837..951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42722 838..951 +
1691481231.3897069-CDS-H-paniculata_contig42722:837..9511691481231.3897069-CDS-H-paniculata_contig42722:837..951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42722 838..951 +
1622930299.5701861-CDS-H-paniculata_contig42722:1477..15731622930299.5701861-CDS-H-paniculata_contig42722:1477..1573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42722 1478..1573 +
1691481231.4030864-CDS-H-paniculata_contig42722:1477..15731691481231.4030864-CDS-H-paniculata_contig42722:1477..1573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42722 1478..1573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42722.10934.1prot_H-paniculata_contig42722.10934.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42722 838..1573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42722.10934.1

>prot_H-paniculata_contig42722.10934.1 ID=prot_H-paniculata_contig42722.10934.1|Name=mRNA_H-paniculata_contig42722.10934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
LFSCLASVAEVFDYWAHASAIDIGENMTAPDNFESRAQAVVTFVAGAIAG
VVSRTATAPFDRLKTLLQV*
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mRNA from alignment at H-paniculata_contig42722:838..1573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42722.10934.1 ID=mRNA_H-paniculata_contig42722.10934.1|Name=mRNA_H-paniculata_contig42722.10934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=736bp|location=Sequence derived from alignment at H-paniculata_contig42722:838..1573+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTTTCTTGTCTTGCCAGTGTGGCGGAGGTGTTCGATTACTGGGCACA TGCATCTGCCATCGACATCGGGGAAAATATGACGGCGCCAGATAACTTCG AGAGCCGAGCTCAGGTGATGGCCACAACATGAGCACAGCATGAGCACAAC ATGAGCACAGCATGAGCACAGCATGAGCGTGACTGACGGTGTAACGTTAC AAGTGGCATCAAGATGTAATGTGTTGAAGGCGTCCGCGTAGAGAACGAGC ACGATGGTGTACAGTACAACGAAACACGAGATAATCATGTACTGATACAA GGGCTGTTACAGATGATAGAGGAGTGAACGTGGAACGTGAAAAAAGCGTA ACACGACACACAAGAATGAAGGTATAGTATGGAACATGACGTGTTCGTGA GACTGACTGCACCTTACTTTTGTGTGTCGAGGCAATTGCTCTTGGTGATG TTACTGACGCTGCCTGTTGCTCTTGGTTTTGCCCTGGCTGTGTGTGCTTT ATTTTGTTTTCATGTGTGCCCTATTAATGGTCATTTTCTGTAGTGTATTC GTGTCTTGTTAATAATTAACATGTCTCTCCCGCCTCGTTCTGACATCAAG TTAGTTATTAATAATACAATTTTACACGGATATATGACAGGCCGTCGTAA CGTTTGTTGCTGGAGCTATCGCGGGGGTAGTGAGCAGGACAGCAACTGCT CCGTTCGACAGGCTGAAGACGCTTTTACAGGTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig42722:838..1573+

>mRNA_H-paniculata_contig42722.10934.1 ID=mRNA_H-paniculata_contig42722.10934.1|Name=mRNA_H-paniculata_contig42722.10934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig42722:838..1573+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTTTCTTGTCTTGCCAGTGTGGCGGAGGTGTTCGATTACTGGGCACA
TGCATCTGCCATCGACATCGGGGAAAATATGACGGCGCCAGATAACTTCG
AGAGCCGAGCTCAGTTGTTTTCTTGTCTTGCCAGTGTGGCGGAGGTGTTC
GATTACTGGGCACATGCATCTGCCATCGACATCGGGGAAAATATGACGGC
GCCAGATAACTTCGAGAGCCGAGCTCAGGCCGTCGTAACGTTTGTTGCTG
GAGCTATCGCGGGGGTAGTGAGCAGGACAGCAACTGCTCCGTTCGACAGG
CTGAAGACGCTTTTACAGGTTTGAGCCGTCGTAACGTTTGTTGCTGGAGC
TATCGCGGGGGTAGTGAGCAGGACAGCAACTGCTCCGTTCGACAGGCTGA
AGACGCTTTTACAGGTTTGA
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