prot_H-paniculata_contig42719.10930.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig42719.10930.1
Unique Nameprot_H-paniculata_contig42719.10930.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length180
Homology
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 59.3 bits (142), Expect = 4.290e-7
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 0
Query:   93 ETWICDNGATKHMTHDSDFLFNYQEC-DGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLG 170
            + WI D+GA++HMTH S+++ N Q   D HV L DG +  + G G +++Q   D + +   L  V ++P L+ +L S+G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 55.5 bits (132), Expect = 9.620e-6
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   91 GMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 179
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  395 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFASNLLSV-KRSDNGGEY 473          
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 55.5 bits (132), Expect = 1.000e-5
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   91 GMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 179
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  410 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 488          
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 55.5 bits (132), Expect = 1.010e-5
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   91 GMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 179
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  409 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 487          
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 53.9 bits (128), Expect = 3.060e-5
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   91 GMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFAD 174
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ +  D
Sbjct:  414 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSVKRCTD 488          
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: Q9ZQK0_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQK0_ARATH)

HSP 1 Score: 53.9 bits (128), Expect = 3.530e-5
Identity = 31/91 (34.07%), Postives = 52/91 (57.14%), Query Frame = 0
Query:   81 SEGLEYRKVGGMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGK 171
            S G  Y  +  ++  I D+GA+ HM  DS  + N +   G+V +A+G+R+P++GVG L L   FD      K ++  ++P  + +LLS+ K
Sbjct:  299 SSGKSYHALSSLKPLIIDSGASHHMISDSKLISNIEPALGNVVIANGDRIPVKGVGDLDL---FD------KSSKAFYMPTFTSNLLSVKK 380          
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME)

HSP 1 Score: 53.1 bits (126), Expect = 4.280e-5
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 0
Query:   95 WICDNGATKHMTHDSDFLFNYQECDGH-VRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFG 176
            WI D+G   HMTH+ DFL N+Q+ D   V L D +   ++G G +  Q      ++ M LT V ++P L  +L+SL +    G
Sbjct:   68 WIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSV--QIATHDRMIKM-LTNVRYVPELKRNLISLNELDKSG 147          
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 52.8 bits (125), Expect = 8.780e-5
Identity = 30/96 (31.25%), Postives = 54/96 (56.25%), Query Frame = 0
Query:   76 VLSVGSEGLEYRKVGGMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGK 171
            ++S+   G+ +       + + D+GA+ HM  +S+ L N +   GHV +A+G+++PIEG+G L L F  DS+          F+P  + +LLS+ +
Sbjct:  323 IVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSVKR 409          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME4.290e-736.71Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
UPI000BBEF31C9.620e-638.20uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B1.000e-538.20uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC901.010e-538.20uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
UPI0006AB2FB33.060e-535.71uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]
Q9ZQK0_ARATH3.530e-534.07Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A5A7U112_CUCME4.280e-536.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A178U605_ARATH8.780e-531.25ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 1..31
e-value: 5.2E-5
score: 25.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 15..30
score: 8.812
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 4..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42719contigH-paniculata_contig42719:723..1262 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42719.10930.1mRNA_H-paniculata_contig42719.10930.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig42719 723..1262 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig42719.10930.1 ID=prot_H-paniculata_contig42719.10930.1|Name=mRNA_H-paniculata_contig42719.10930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
RSKDHLQRECPNVYCRRCGKRGHDLYTCPQIADEVACLAEAEIEIKLQEA
LKVDLGEDEFIAAYIASTSTTGKEEVLSVGSEGLEYRKVGGMETWICDNG
ATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVL
MKLTQVAFIPLLSHHLLSLGKFADFGHEYR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf