mRNA_H-paniculata_contig42719.10930.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42719.10930.1
Unique NamemRNA_H-paniculata_contig42719.10930.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 59.3 bits (142), Expect = 4.290e-7
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:  277 ETWICDNGATKHMTHDSDFLFNYQEC-DGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLG 510
            + WI D+GA++HMTH S+++ N Q   D HV L DG +  + G G +++Q   D + +   L  V ++P L+ +L S+G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
[Close]
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 55.5 bits (132), Expect = 9.620e-6
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:  271 GMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 537
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  395 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFASNLLSV-KRSDNGGEY 473
[Close]
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 55.5 bits (132), Expect = 1.000e-5
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:  271 GMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 537
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  410 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 488
[Close]
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 55.5 bits (132), Expect = 1.010e-5
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:  271 GMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 537
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ K +D G EY
Sbjct:  409 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 487
[Close]
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 53.9 bits (128), Expect = 3.060e-5
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:  271 GMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFAD 522
            G++  I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ +  D
Sbjct:  414 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSVKRCTD 488
[Close]
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: Q9ZQK0_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQK0_ARATH)

HSP 1 Score: 53.9 bits (128), Expect = 3.530e-5
Identity = 31/91 (34.07%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:  241 SEGLEYRKVGGMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGK 513
            S G  Y  +  ++  I D+GA+ HM  DS  + N +   G+V +A+G+R+P++GVG L L   FD      K ++  ++P  + +LLS+ K
Sbjct:  299 SSGKSYHALSSLKPLIIDSGASHHMISDSKLISNIEPALGNVVIANGDRIPVKGVGDLDL---FD------KSSKAFYMPTFTSNLLSVKK 380
[Close]
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME)

HSP 1 Score: 53.1 bits (126), Expect = 4.280e-5
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:  283 WICDNGATKHMTHDSDFLFNYQECDGH-VRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFG 528
            WI D+G   HMTH+ DFL N+Q+ D   V L D +   ++G G +  Q      ++ M LT V ++P L  +L+SL +    G
Sbjct:   68 WIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSV--QIATHDRMIKM-LTNVRYVPELKRNLISLNELDKSG 147
[Close]
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 52.8 bits (125), Expect = 8.780e-5
Identity = 30/96 (31.25%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:  226 VLSVGSEGLEYRKVGGMETWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGK 513
            ++S+   G+ +       + + D+GA+ HM  +S+ L N +   GHV +A+G+++PIEG+G L L F  DS+          F+P  + +LLS+ +
Sbjct:  323 IVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSVKR 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42719.10930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME4.290e-736.71Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
UPI000BBEF31C9.620e-638.20uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B1.000e-538.20uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC901.010e-538.20uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
UPI0006AB2FB33.060e-535.71uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]
Q9ZQK0_ARATH3.530e-534.07Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A5A7U112_CUCME4.280e-536.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A178U605_ARATH8.780e-531.25ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42719contigH-paniculata_contig42719:723..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930299.126527-CDS-H-paniculata_contig42719:722..12621622930299.126527-CDS-H-paniculata_contig42719:722..1262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42719 723..1262 +
1691481231.2154045-CDS-H-paniculata_contig42719:722..12621691481231.2154045-CDS-H-paniculata_contig42719:722..1262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42719 723..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42719.10930.1prot_H-paniculata_contig42719.10930.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42719 723..1262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42719.10930.1

>prot_H-paniculata_contig42719.10930.1 ID=prot_H-paniculata_contig42719.10930.1|Name=mRNA_H-paniculata_contig42719.10930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
RSKDHLQRECPNVYCRRCGKRGHDLYTCPQIADEVACLAEAEIEIKLQEA
LKVDLGEDEFIAAYIASTSTTGKEEVLSVGSEGLEYRKVGGMETWICDNG
ATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVL
MKLTQVAFIPLLSHHLLSLGKFADFGHEYR
back to top

mRNA from alignment at H-paniculata_contig42719:723..1262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42719.10930.1 ID=mRNA_H-paniculata_contig42719.10930.1|Name=mRNA_H-paniculata_contig42719.10930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at H-paniculata_contig42719:723..1262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGAATGCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGTACACGTGCCCCCAGATCGCCGATG
AAGTTGCTTGTTTGGCTGAAGCTGAAATTGAGATTAAACTTCAAGAGGCG
CTCAAGGTTGACCTGGGCGAAGACGAGTTCATCGCGGCATACATCGCGTC
GACTTCCACCACAGGCAAGGAAGAGGTTTTGTCTGTGGGCTCTGAGGGGT
TAGAATATCGTAAGGTGGGGGGGATGGAGACCTGGATTTGTGATAATGGT
GCAACGAAACACATGACCCATGATTCAGATTTTCTTTTTAATTACCAGGA
ATGTGATGGGCATGTACGCCTTGCAGATGGCAATCGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTCGTATTG
ATGAAGTTAACTCAGGTTGCGTTCATACCACTCCTCAGTCATCATCTTCT
ATCTCTAGGGAAATTCGCGGACTTTGGTCATGAATATAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig42719:723..1262+

>mRNA_H-paniculata_contig42719.10930.1 ID=mRNA_H-paniculata_contig42719.10930.1|Name=mRNA_H-paniculata_contig42719.10930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig42719:723..1262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGAATGCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGTACACGTGCCCCCAGATCGCCGATG
AAGTTGCTTGTTTGGCTGAAGCTGAAATTGAGATTAAACTTCAAGAGGCG
CTCAAGGTTGACCTGGGCGAAGACGAGTTCATCGCGGCATACATCGCGTC
GACTTCCACCACAGGCAAGGAAGAGGTTTTGTCTGTGGGCTCTGAGGGGT
TAGAATATCGTAAGGTGGGGGGGATGGAGACCTGGATTTGTGATAATGGT
GCAACGAAACACATGACCCATGATTCAGATTTTCTTTTTAATTACCAGGA
ATGTGATGGGCATGTACGCCTTGCAGATGGCAATCGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTCGTATTG
ATGAAGTTAACTCAGGTTGCGTTCATACCACTCCTCAGTCATCATCTTCT
ATCTCTAGGGAAATTCGCGGACTTTGGTCATGAATATAGGCGCTCCAAGG
ATCACCTTCAACGGGAATGCCCCAACGTGTACTGTCGGCGATGTGGTAAG
CGTGGTCACGACTTGTACACGTGCCCCCAGATCGCCGATGAAGTTGCTTG
TTTGGCTGAAGCTGAAATTGAGATTAAACTTCAAGAGGCGCTCAAGGTTG
ACCTGGGCGAAGACGAGTTCATCGCGGCATACATCGCGTCGACTTCCACC
ACAGGCAAGGAAGAGGTTTTGTCTGTGGGCTCTGAGGGGTTAGAATATCG
TAAGGTGGGGGGGATGGAGACCTGGATTTGTGATAATGGTGCAACGAAAC
ACATGACCCATGATTCAGATTTTCTTTTTAATTACCAGGAATGTGATGGG
CATGTACGCCTTGCAGATGGCAATCGTCTCCCGATCGAAGGAGTTGGCAT
GCTGTTCCTTCAATTTCGATTTGACTCCGAGGTCGTATTGATGAAGTTAA
CTCAGGTTGCGTTCATACCACTCCTCAGTCATCATCTTCTATCTCTAGGG
AAATTCGCGGACTTTGGTCATGAATATAGG
back to top