mRNA_H-paniculata_contig42705.10923.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 212 bits (540), Expect = 2.000e-61 Identity = 110/224 (49.11%), Postives = 139/224 (62.05%), Query Frame = 1
Query: 1 LQARLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRG-GCPYLLMLLDDSTVF-------------------------GAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRAR 594
+Q RL++CAHM+EA HRGV AT++ L YC W M+ +V EFV+QCLHC+DS+SG V RP GE +HG GEVLHFD LH+G S PL + G YLL+++DD + F G P V+VSDT +FKN ++ L ALG + RF+VANS WSNGT +RM RE++ T KAVL E R V +W VP VQWALNTA+R R
Sbjct: 414 MQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRER 637
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 213 bits (541), Expect = 3.400e-60 Identity = 108/226 (47.79%), Postives = 141/226 (62.39%), Query Frame = 1
Query: 1 LQARLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRG-GCPYLLMLLDDST-------------------------VFGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 600
LQ RL+VCAHM+EA HRG AT+ L+ YC W ME +V +FV+QCLHC+DS++G +V RPLGE +HGT GEV+HFD L++GAS PL + + G Y+L+++DD + + G P V+VSDT +FKN +++ L TALG FSVANS WSNGT +RM REV+ T KA++ E +W VP VQWALNTA R R G
Sbjct: 1292 LQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYG 1517
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 212 bits (540), Expect = 4.620e-60 Identity = 110/224 (49.11%), Postives = 139/224 (62.05%), Query Frame = 1
Query: 1 LQARLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRG-GCPYLLMLLDDSTVF-------------------------GAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRAR 594
+Q RL++CAHM+EA HRGV AT++ L YC W M+ +V EFV+QCLHC+DS+SG V RP GE +HG GEVLHFD LH+G S PL + G YLL+++DD + F G P V+VSDT +FKN ++ L ALG + RF+VANS WSNGT +RM RE++ T KAVL E R V +W VP VQWALNTA+R R
Sbjct: 1190 MQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRER 1413
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 168 bits (426), Expect = 5.550e-47 Identity = 91/190 (47.89%), Postives = 114/190 (60.00%), Query Frame = 1
Query: 103 MEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRG-GCPYLLMLLDDSTVF-------------------------GAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRAR 594
M+ +V EFV+QCLHC+DS+SG V RP GE +HG GEVLHFD LH+G S PL + G YLL+++DD + F G P V+VSDT +FKN ++ L ALG + RF+VANS WSNGT +RM REV+ T KAVL E R + +W VP VQWALNTA+R R
Sbjct: 1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRER 190
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6A3LWA5_9STRA (Integrase catalytic domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LWA5_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.230e-32 Identity = 81/224 (36.16%), Postives = 114/224 (50.89%), Query Frame = 1
Query: 1 LQARLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLDDSTV-------------------------FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARL 597
LQ RL V AH A HRG T L W + +VA FV +C+HC+ + +G ++ RPLGE L T+ E LHFD L + GG Y+L+L D+ + FG R +VSD +F+NR+++ L ALGA H F+ A ++W+NGTV+ +NREV+ KA+L++ V +W +PVVQ ALN RL
Sbjct: 274 LQLRLGVVAHAGAAGHRGAKTTAKALEDLFSWRSLRKDVAVFVSECMHCMTTATG-KIPRPLGETLRATKPNEQLHFDFLSMAEG---------AGGLKYVLLLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNRVIAELQRALGAHHHFTTAYTLWANGTVEVVNREVLKAVKALLSKRRLRVEDWPRVLPVVQGALNQMPADRL 487
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR) HSP 1 Score: 129 bits (323), Expect = 5.360e-31 Identity = 76/225 (33.78%), Postives = 109/225 (48.44%), Query Frame = 1
Query: 1 LQARLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLDDST-------------------------VFGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 600
LQ ++VC+H HRG+DAT + + W ++ +V VR C HC+ +R+G V RPLG +HG EV+H D L++G K+ YLL+L DD + VFG VSD +FKN L+ L L KH F+ A S W+NG+++RM REV+ + +A+L+E +W VQ +N A RLG
Sbjct: 285 LQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKK---------YLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHFTTAYSPWANGSIERMCREVLRSCRALLSEWRLGAKDWPAVTEAVQSVINHAPLRRLG 500
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A485LNJ2_9STRA (Aste57867_23616 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNJ2_9STRA) HSP 1 Score: 112 bits (281), Expect = 2.660e-25 Identity = 67/212 (31.60%), Postives = 100/212 (47.17%), Query Frame = 1
Query: 10 RLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGAS-DPLKEHEVIRGGCPY---------------LLMLLDDSTVFGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARL 597
R++V AH HRG D +HL D ++ V FVR+C C + + RP EL H E LHFD L +G S P+K V++ + + LLD FG P ++SD +FKN ++ + L H+F++ S W NGT++R+NR+++ + +L E + EW +PVVQ LN A L
Sbjct: 975 RMLVIAHCGSMGHRGEDVMYSHLRRQFWIDNLKQLVQHFVRECPMCPLVKGERVIQRPHSELWHAERANEGLHFDFLFMGDSFGPMKYILVLKDDLTHFCELIACEAPTADVVVTALLDWHKRFGIPETWISDQGSHFKNHVMKTVAAKLKVDHKFTITYSPWRNGTIERLNRDILQVMRVLLKEYHLDEREWEYLLPVVQANLNQTPTASL 1186
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6A3VH71_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VH71_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.910e-25 Identity = 74/225 (32.89%), Postives = 107/225 (47.56%), Query Frame = 1
Query: 1 LQARLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLD--------------DSTV-----------FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 600
L RL + AH HRG AT HL + ++ VA FVRQC CL S+ G+ + RP GE L +E VLHFD L +G S G Y+L+L D DS+V FG P ++SD FKN +V+ L L ++ F+ A W NG+V+R+NR+++ + ++ E ++W +P+VQ +LN LG
Sbjct: 120 LLQRLFIIAHCGAQGHRGGAATAEHLRRLFAIEHLDTKVAAFVRQCRLCLHSKGGNIIPRPWGETLECSERNGVLHFDYLSMGESF---------GDSKYILVLKDHASHYCELVVADTADSSVTVEALLAWHARFGVPPTWISDQGSNFKNEVVAELSRRLRSQQEFTPAYCPWINGSVERVNRDILQVIRTMILEYKINHTDWPYLMPMVQASLNHTAVPSLG 335
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: H3H4D4_PHYRM (RNA-directed DNA polymerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4D4_PHYRM) HSP 1 Score: 110 bits (275), Expect = 1.680e-24 Identity = 75/222 (33.78%), Postives = 105/222 (47.30%), Query Frame = 1
Query: 10 RLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHEVIRGGCPYLLMLLD--------------DSTV-----------FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALNTAHRARLG 600
RL + AH HRG A V HL + + + FVRQC CL S+ G+ + RP GE + E VLHFD L +G S G Y+L+L D DSTV FG P V++SD +FKN +VS L L + +F+ A W NG+V+R+NR+++ + ++ E S+W VP+VQ +LN LG
Sbjct: 950 RLFIIAHCGAQGHRGHAAMVEHLRRLFAIEKLNTLASTFVRQCRLCLHSKGGNIIPRPWGETIDCCERNGVLHFDFLFMGESF---------GDSKYILVLKDHASHFCELVVADTADSTVTVEAFLAWHSRFGLPPVWISDQGSHFKNEVVSELSRRLRTQQQFTPAYCPWINGSVERVNRDILQVIRTMILEYKINHSDWVYLVPMVQSSLNHTAVPSLG 1162
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Match: A0A6A3GZ49_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GZ49_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.830e-24 Identity = 67/208 (32.21%), Postives = 105/208 (50.48%), Query Frame = 1
Query: 1 LQARLIVCAHMQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRPLGELLHGTEVGEVLHFDVLHLGASDPLKEHE-VIRGGCPYLLMLL--DDSTV-------------FGAPRVFVSDTVRYFKNRLVSLLVTALGAKHRFSVANSVWSNGTVDRMNREVINTFKAVLNETNRPVSEWSVAVPVVQWALN 576
L RL++ AH HRG+ NH+ G++ V +F +CL CL + G + RP E H E E LH+D L LG S + V++ + + L+ D ST FG P V+VSDT +FK+++++ L L + F +A S W NG+V+R+NR+++ KA+ E V +W +P+VQ ++N
Sbjct: 184 LTQRLLIIAHCGRNGHRGMHVMQNHIRRLFYVGGLDRIVKDFCAKCLLCLHVKGGVVIPRPFSETHHTFERNETLHWDFLTLGESFGTSRYALVLKDEATHFVDLVACDSSTSEVAASAILDWYSRFGVPTVWVSDTGSHFKSKVIAELSRRLKGRQEFILAYSPWKNGSVERVNRDILQVLKALALEFKVSVHDWPYLLPLVQSSVN 391 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42705.10923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig42705.10923.1 >prot_H-paniculata_contig42705.10923.1 ID=prot_H-paniculata_contig42705.10923.1|Name=mRNA_H-paniculata_contig42705.10923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp MQEASHRGVDATVNHLAAYCVWDGMEANVAEFVRQCLHCLDSRSGSRVLRback to top mRNA from alignment at H-paniculata_contig42705:628..1302+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig42705.10923.1 ID=mRNA_H-paniculata_contig42705.10923.1|Name=mRNA_H-paniculata_contig42705.10923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=675bp|location=Sequence derived from alignment at H-paniculata_contig42705:628..1302+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig42705:628..1302+ >mRNA_H-paniculata_contig42705.10923.1 ID=mRNA_H-paniculata_contig42705.10923.1|Name=mRNA_H-paniculata_contig42705.10923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig42705:628..1302+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |