prot_H-paniculata_contig42675.10912.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig42675.10912.1
Unique Nameprot_H-paniculata_contig42675.10912.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length244
Homology
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.340e-25
Identity = 79/244 (32.38%), Postives = 118/244 (48.36%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDGPKTSEK-AEEMRG----VLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGG 240
            Q+G+ W  +    L + G+EQ   DPC+FRK+VDGE+V  ++IYV+ +++S    +  +EL A L+    +KDLGD  +Y GC I  D +   TK+ Q  Y  SM   F +  T+  P    ++   K D   + +K   E  G    +L +       L         PT R        NA+V        I+ Y+  T DLGITY  +  G+++ V+ DS Y      RRS +  AV +GG
Sbjct:   57 QSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVRETIGCLMWLLFMRPDIALPLNKLQKIAHSPTERMW------NALVR-------IMSYLNETKDLGITYV-RGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGG 285          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.370e-24
Identity = 79/244 (32.38%), Postives = 117/244 (47.95%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDGPKTSEK-AEEMRG----VLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGG 240
            Q+G+ W  +    L + G+EQ   DPC+FRK+VDGE+V  ++IYV+ +++S    +  +EL A L+    +KDLGD  +Y GC I  D +   TK+ Q  Y  SM   F +  T+  P    ++   K D   + +K   E  G    +L         L         PT R        NA+V        I+ Y+  T DLGITY  +  G+++ V+ DS Y      RRS +  AV +GG
Sbjct:  270 QSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVREAIGCLMWLLFTRPDIALPLNKLQKIAHSPTERMW------NALVR-------IMSYLNETKDLGITYV-RGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGG 498          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.650e-24
Identity = 79/244 (32.38%), Postives = 117/244 (47.95%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDGPKTSEK-AEEMRG----VLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGG 240
            Q+G+ W  +    L + G+EQ   DPC+FRK+VDGE+V  ++IYV+ +++S    +  +EL A L+    +KDLGD  +Y GC I  D +   TK+ Q  Y  SM   F +  T+  P    ++   K D   + +K   E  G    +L         L         PT R        NA+V        I+ Y+  T DLGITY  +  G+++ V+ DS Y      RRS +  AV +GG
Sbjct:  450 QSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVREAIGCLMWLLFTRPDIALPLNKLQKIAHSPTERMW------NALVR-------IMSYLNETKDLGITYV-RGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGG 678          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.020e-24
Identity = 79/244 (32.38%), Postives = 117/244 (47.95%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDGPKTSEK-AEEMRG----VLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGG 240
            Q+G+ W  +    L + G+EQ   DPC+FRK+VDGE+V  ++IYV+ +++S    +  +EL A L+    +KDLGD  +Y GC I  D +   TK+ Q  Y  SM   F +  T+  P    ++   K D   + +K   E  G    +L         L         PT R        NA+V        I+ Y+  T DLGITY  +  G+++ V+ DS Y      RRS +  AV +GG
Sbjct:  703 QSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVREAIGCLMWLLFTRPDIALPLNKLQKIAHSPTERMW------NALVR-------IMSYLNETKDLGITYV-RGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGG 931          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.380e-24
Identity = 79/244 (32.38%), Postives = 117/244 (47.95%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDGPKTSEK-AEEMRG----VLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGG 240
            Q+G+ W  +    L + G+EQ   DPC+FRK+VDGE+V  ++IYV+ +++S    +  +EL A L+    +KDLGD  +Y GC I  D +   TK+ Q  Y  SM   F +  T+  P    ++   K D   + +K   E  G    +L         L         PT R        NA+V        I+ Y+  T DLGITY  +  G+++ V+ DS Y      RRS +  AV +GG
Sbjct: 1165 QSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVREAIGCLMWLLFTRPDIALPLNKLQKIAHSPTERMW------NALVR-------IMSYLNETKDLGITYV-RGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGG 1393          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 8.470e-24
Identity = 74/241 (30.71%), Postives = 115/241 (47.72%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISI-KGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDG-PKTSEKAEEMRGVLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGG 240
            Q+G+ W  +    L   G+EQ   DPCVFRK+VDGE+V  ++IYV+ +L++  +G +  +EL A L  +  +KDLG+  +Y GC I  D +   TK+ Q  Y  SM + F +  T+  P     +   K D  P   +   E  G L+        +    N  +         K   +       A+  I+ Y+  T D GITY  +  G++  V+ D+ Y   +  RRS +  AV +GG
Sbjct:   17 QSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER--EELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQ---------KIAHSPTGRIWNALVRIMSYLNFTKDFGITYV-RGSGLDRSVFVDASYADNEVDRRSTTGLAVTVGG 245          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 8.480e-24
Identity = 74/241 (30.71%), Postives = 116/241 (48.13%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISI-KGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDG-PKTSEKAEEMRGVLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGG 240
            Q+G+ W  +    L   G+EQ   DPCVFRK+VDGE+V  ++IYV+ +L++  +G +  +EL A L     +KDLG+  +Y GC I  D +   TK+ Q  Y  SM + F +  T+  P     +   K D  P   +   E  G L+        +    N  +         K  ++       A+  I+ Y+  T D GITY  +  G+++ V+ D+ Y   +  RRS +  AV +GG
Sbjct:   17 QSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER--EELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQ---------KIAQSPTGRIWNALVRIMSYLNFTKDFGITYV-RGSGLDLSVFVDASYADNEVDRRSTTGLAVTVGG 245          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5K0Q0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.930e-23
Identity = 78/244 (31.97%), Postives = 116/244 (47.54%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDGPKTSEK-AEEMRG----VLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGG 240
            Q+G+ W  +    L + G+EQ   DPC+FRK+VDGE+V  ++IYV+ +++     +  +EL A L+    +KDLGD  +Y GC I  D +   TK+ Q  Y  SM   F +  T+  P    ++   K D   + +K   E  G    +L         L         PT R        NA+V        I+ Y+  T DLGITY  +  G+++ V+ DS Y      RRS +  AV +GG
Sbjct:  471 QSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLCATEEER-EELLASLQKGFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVREAIGCLMWLLFTRPDIALPLNKLQKIAHSPTERMW------NALVR-------IMSYLNETKDLGITYV-RGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGG 699          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI)

HSP 1 Score: 107 bits (267), Expect = 6.960e-23
Identity = 74/244 (30.33%), Postives = 121/244 (49.59%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVAVIIYVNGLLISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGI--LKTSMLPVRAGNNTMIKNDGPKTSEK--AEEMRGVLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLV-YADSDYTTCQDSRRSVSSGAVLLGGG 241
            QA + W  K+  EL    F  S +D  +F  ++DGE V V+++V+ +LI+ KG + + +++A L     ++DLG A+Y+LG E+T DR+ R  K+ Q    + +   +G+   K    P+ +G     + D   T +   +E +  +L L       +     A           ++      EH RA   + +Y+  TA+LG+T+GG     E LV YAD+DY    DSRRS +    L+ GG
Sbjct:  714 QAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGERVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQKKLTKELLGRYGLEAAKARSTPLSSGEKLQREGDPLDTGKYPYSELVGSLLYLSVCTRPDIAQAVGAL---------ARYMAGPTEEHWRAALGVARYLSGTAELGVTFGGS---AEPLVGYADADYAGDVDSRRSTTGYVFLVYGG 945          
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Match: A0A6H5K3H6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.030e-23
Identity = 72/235 (30.64%), Postives = 110/235 (46.81%), Query Frame = 0
Query:    3 QAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVA-VIIYVNGLLISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQHLYARSMAEHFGILKTSMLPVRAGNNTMIKNDGPKTSEKAEEMRGVLILGDSRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADLGITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAV 236
            Q+G  W  +V   L + G+EQ   DPC+FRK+VDG++V  ++IYV+ ++ S    +  +EL A L+    +KDLGD  +Y GC I  D +   TK+ Q  Y  SM   F +  T+  P    +    K D   + +   E  G L+        +    N  +         K   +       A+  I+ Y+  T DLGITY  +  G+++ V+ DS Y      RRS +  AV
Sbjct:  503 QSGSEWGFEVADALISNGYEQCRVDPCIFRKVVDGDVVGLIVIYVDDIMFSATEQER-EELLASLQKRFSVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDGLGPKRDDESSDKPVREAIGCLMWFLFTRPDIALPLNKLQ---------KIAHSPTERMWNALVRIMSYLNETKDLGITYV-RGSGLDLDVFVDSSYADSTVDRRSTTGLAV 726          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42675.10912.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCN6_9PHAE5.340e-2532.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE5.370e-2432.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE5.650e-2432.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE6.020e-2432.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY9_9PHAE6.380e-2432.38CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]
A0A6H5KW89_9PHAE8.470e-2430.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE8.480e-2430.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0Q0_9PHAE1.930e-2331.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1IVX6_KLENI6.960e-2330.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K3H6_9PHAE7.030e-2330.64Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..114
e-value: 4.2E-15
score: 56.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42675contigH-paniculata_contig42675:930..1661 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42675.10912.1mRNA_H-paniculata_contig42675.10912.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig42675 399..1661 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig42675.10912.1 ID=prot_H-paniculata_contig42675.10912.1|Name=mRNA_H-paniculata_contig42675.10912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MVQAGKCWSMKVIRELTAKGFEQSHADPCVFRKLVDGEMVAVIIYVNGLL
ISIKGPKIVDELRADLRLDHKLKDLGDAKYYLGCEITCDRKKRKTKIDQH
LYARSMAEHFGILKTSMLPVRAGNNTMIKNDGPKTSEKAEEMRGVLILGD
SRGAHLGGDNNATRHPTRRTHYVKFCENAVVEHKRAVGNILQYVLRTADL
GITYGGQDCGVEMLVYADSDYTTCQDSRRSVSSGAVLLGGGGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2