mRNA_H-paniculata_contig4264.10903.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4264.10903.1
Unique NamemRNA_H-paniculata_contig4264.10903.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4264.10903.1 vs. uniprot
Match: D8LLI4_ECTSI (SEN1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.150e-15
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 2 
Query:   38 GVGFPCEGVAELLLRHPEHWWCRYTNAMSEMLLSIDGGLEGDCAHSGQADGRSRGHRATLARGASTAVSLVWQEADAQL 274
            G GFP E VAELLLRHPEHWWCRY +AM+EMLLS+DGG E +    G          +T +  + T V +VWQ    QL
Sbjct:   85 GFGFPFEAVAELLLRHPEHWWCRYPDAMAEMLLSLDGGCESE----GLPYAPVTSDTSTTSSDSLTGVGIVWQTVSLQL 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4264.10903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLI4_ECTSI1.150e-1551.90SEN1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4264contigH-paniculata_contig4264:11201..12741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4264.10903.1prot_H-paniculata_contig4264.10903.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4264 11211..12741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.8696306-UTR-H-paniculata_contig4264:11200..112101622930296.8696306-UTR-H-paniculata_contig4264:11200..11210Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4264 11201..11210 +
1691481230.299315-UTR-H-paniculata_contig4264:11200..112101691481230.299315-UTR-H-paniculata_contig4264:11200..11210Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4264 11201..11210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930296.8828552-CDS-H-paniculata_contig4264:11210..113051622930296.8828552-CDS-H-paniculata_contig4264:11210..11305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 11211..11305 +
1691481230.3118627-CDS-H-paniculata_contig4264:11210..113051691481230.3118627-CDS-H-paniculata_contig4264:11210..11305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 11211..11305 +
1622930296.8992078-CDS-H-paniculata_contig4264:11710..118271622930296.8992078-CDS-H-paniculata_contig4264:11710..11827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 11711..11827 +
1691481230.3209963-CDS-H-paniculata_contig4264:11710..118271691481230.3209963-CDS-H-paniculata_contig4264:11710..11827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 11711..11827 +
1622930296.916553-CDS-H-paniculata_contig4264:12686..127411622930296.916553-CDS-H-paniculata_contig4264:12686..12741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 12687..12741 +
1691481230.3301506-CDS-H-paniculata_contig4264:12686..127411691481230.3301506-CDS-H-paniculata_contig4264:12686..12741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4264 12687..12741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4264.10903.1

>prot_H-paniculata_contig4264.10903.1 ID=prot_H-paniculata_contig4264.10903.1|Name=mRNA_H-paniculata_contig4264.10903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MECTVDDVSGVGFPCEGVAELLLRHPEHWWCRYTNAMSEMLLSIDGGLEG
DCAHSGQADGRSRGHRATLARGASTAVSLVWQEADAQLG
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mRNA from alignment at H-paniculata_contig4264:11201..12741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4264.10903.1 ID=mRNA_H-paniculata_contig4264.10903.1|Name=mRNA_H-paniculata_contig4264.10903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1541bp|location=Sequence derived from alignment at H-paniculata_contig4264:11201..12741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGAGCTGATGGAGTGCACCGTTGACGACGTCAGTGGGGTCGGCTTTC
CTTGTGAAGGTGTTGCTGAGCTGCTATTGCGGCACCCGGAGCATTGGTGG
TGCCGGTGAGGACTTAATCTGCAGTGGCAGTTCCCCAGGAAATTTGAAAG
AAGGAAATAGATATGATTTTAGGTAACCAACGGCTACCACACCCAATCTT
TTTTGTGCTTATGTTTTCCATGCAAGATGGCATTCTGGATTATATGGGCA
AGATATAGGCAGCATTTGTAGCCAGCGTTTGTACAGCACGTCAGCCTTCA
GACCAACGCCTCACTCATTTGCAGGTATGAAGGTTGGATTCCATTCACAA
TTCCACATTGCACCGCGGATATATACCAATTGAAGTTGTGCCGAATGTTG
TATGTATGGTGGGATTTTGCAAGAAGACGTGACGGTTCGCAGGGTTTCAT
CAGTCACTTATTTGGTCTGAAAAGAGCCCCGCTACCTGCTGTCGGTCGCT
CGCTTTGCAGTTACACCAATGCCATGAGTGAGATGCTCTTATCTATCGAC
GGCGGTCTCGAAGGTGACTGTGCTCACTCGGGACAAGCGGACGGGCGAAG
TCGGGGTCATCGTGCAACTCTCGCAAGGTAGAAACCTTGTAGGTGCTTGC
TGTTGAGACACTCTGACCACTACGAGTGCCTTCCTGACGCCTGTATCCAA
ATAATGGTGTTGGAGGGTATGTGCGTCCAGAATCAATCATGCCGCATGTC
GTGTATTCGGGGAGAGAGGTAGCCCCACTGGTCTGTTGAGTATCATATTT
CTGAGACTACGAAGTTGGAGCACCGACTCGTAGCTACACGTCATAGGCAG
ACATTGGCGATTAGTTGATGCGAAACGGTTCTGAGGAGACGAAGAGTCGG
CATTCACGGGCACTCGCTGCAACCTTGTGTATCCTCCCATCAGAACTAAG
ACACGCGATCACGGTGCGCTGCAATGCTTTACACGCCACGTCCACGTGAG
ATAGTTTAGGAATACAGTTCTTTACCAATTTCCGATTTTCATACAACCGA
CCCTGCGGCACACGTAAGCATAATATCTGTCTTCGTGCAGACAGCGGTTG
CTCGTGCTTGCAACGCGTCGTCTCTTGTGACTCAACGGTCGACCCAAGAA
AACTTATCATTCTCGAAGCACATCCCGTCTAGAACCATTGCACCTGTTTA
GTCAGCACGATGTAAAGTTCCGATTTCGATTGACGTACTTTTAATTTCAC
CACTTCTGGAGAGGAATAATATGTGCCGAGTTTGTTCCATATGCTGGGTA
ATGTGTACAGCTAATGCCTCCACTCGATTCTCGTGAGCGATCTTTTCATT
TTCTCATGGTGATTAAGAGGGGTGCTGCTCATGACATGTTCCAGCTAATG
TAGCGATGGATTTATATTTCCAATGCTCTTACGTCTTGCTCCGTGCCCTG
TGCCTCGTGTCCTCGCTGCCGGTTAACATTCCCCAGGGGCGCCTCGACCG
CCGTTTCTCTCGTTTGGCAAGAGGCGGATGCTCAGCTGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig4264:11201..12741+

>mRNA_H-paniculata_contig4264.10903.1 ID=mRNA_H-paniculata_contig4264.10903.1|Name=mRNA_H-paniculata_contig4264.10903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig4264:11201..12741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTGCACCGTTGACGACGTCAGTGGGGTCGGCTTTCCTTGTGAAGG
TGTTGCTGAGCTGCTATTGCGGCACCCGGAGCATTGGTGGTGCCGATGGA
GTGCACCGTTGACGACGTCAGTGGGGTCGGCTTTCCTTGTGAAGGTGTTG
CTGAGCTGCTATTGCGGCACCCGGAGCATTGGTGGTGCCGTTACACCAAT
GCCATGAGTGAGATGCTCTTATCTATCGACGGCGGTCTCGAAGGTGACTG
TGCTCACTCGGGACAAGCGGACGGGCGAAGTCGGGGTCATCGTGCAACTC
TCGCAAGTTACACCAATGCCATGAGTGAGATGCTCTTATCTATCGACGGC
GGTCTCGAAGGTGACTGTGCTCACTCGGGACAAGCGGACGGGCGAAGTCG
GGGTCATCGTGCAACTCTCGCAAGGGGCGCCTCGACCGCCGTTTCTCTCG
TTTGGCAAGAGGCGGATGCTCAGCTGGGTGGGCGCCTCGACCGCCGTTTC
TCTCGTTTGGCAAGAGGCGGATGCTCAGCTGGGT
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