mRNA_H-paniculata_contig4261.10893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4261.10893.1
Unique NamemRNA_H-paniculata_contig4261.10893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: D7G568_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G568_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 6.480e-131
Identity = 173/227 (76.21%), Postives = 193/227 (85.02%), Query Frame = 1
Query:   25 SDKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            +D H+ L+ QV+VWGGAAK  PRIFCG+YT+ ANH TK+KAIKETWA+RCDGFVAFSD+VDL VPSFKIKHEGPE W NMWQKSRAIWKYID HY  +FDWFVLGGDDIFLIVENLRKYLLS+DIK AAGG  +GG+ PMYLGRRFRP+GN++RIFNSGGAAY+LNQ +V LLA HLDD  C  H+ CSWEDV V  CLR+ GV A DTRD  GRERFHPFTPG HL
Sbjct:  101 NDSHKQLIAQVDVWGGAAKTAPRIFCGVYTYHANHDTKIKAIKETWASRCDGFVAFSDQVDLAVPSFKIKHEGPEEWDNMWQKSRAIWKYIDRHYINDFDWFVLGGDDIFLIVENLRKYLLSDDIKKAAGGFKDGGSVPMYLGRRFRPKGNNDRIFNSGGAAYLLNQKSVRLLASHLDDPSCHPHQQCSWEDVNVAACLRQHGVVAHDTRDGLGRERFHPFTPGQHL 327          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: D7FTE6_ECTSI (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE6_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 4.930e-122
Identity = 163/226 (72.12%), Postives = 189/226 (83.63%), Query Frame = 1
Query:   28 DKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            D H+ LL+Q  VW GA K TPR+FCGIYTH+ NH TKVKAIKETWA+ CDGFVAFSD  DL + +F IKHEGPE + NMWQKSRAIWKYI+FHYK++FDWFVLGGDD+F+IVENLRKYLLSE++K AAGGL NGGTTP+YLGRR R  G+DNRI+N+GGA+YVLNQA+V LLA HLDD +C+ H    WEDV +G+CL+K GVE FDTRD  GRERFHPFTPG H 
Sbjct:  204 DDHKKLLDQTHVWQGARKTTPRVFCGIYTHQNNHATKVKAIKETWASHCDGFVAFSDAADLELQTFMIKHEGPEEYTNMWQKSRAIWKYINFHYKDDFDWFVLGGDDLFIIVENLRKYLLSEEVKRAAGGLENGGTTPVYLGRRLRGFGDDNRIYNNGGASYVLNQASVGLLADHLDDDDCQPHTKKPWEDVLIGSCLKKNGVEPFDTRDNLGRERFHPFTPGAHF 429          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: D7FK30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK30_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 8.870e-118
Identity = 159/226 (70.35%), Postives = 183/226 (80.97%), Query Frame = 1
Query:   28 DKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            D H+ LL Q++VW GA +  PRIFCGIYTH+ NH TKVKA+KETWA+ CDGFVAFSD  DL + +FKIKHEGPE + NMWQK+RAIWKYI+FHYK++FDWFVLGGDD+FLIVENLRKYLLS++IK AAGGL NGG  PMYLGRRFR  G D RI+N+GG +YVLNQA+V LLA HLDD  C+ H    WED+ V  CL+K GVEAFDTRD  GRERFHPFTP  H 
Sbjct:   52 DDHKKLLAQIDVWEGAEEGAPRIFCGIYTHENNHATKVKAVKETWASHCDGFVAFSDVTDLELHTFKIKHEGPEEYSNMWQKARAIWKYINFHYKDDFDWFVLGGDDLFLIVENLRKYLLSDEIKGAAGGLENGGPNPMYLGRRFRFIGED-RIYNNGGPSYVLNQASVGLLASHLDDDACQPHAAKHWEDILVAWCLKKNGVEAFDTRDALGRERFHPFTPAAHF 276          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: A0A6H5JMC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC5_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 2.830e-114
Identity = 155/235 (65.96%), Postives = 187/235 (79.57%), Query Frame = 1
Query:    1 SLARSPHRSDKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            S +++   +D H+++L+ V+VW GA+K  PRIFCGI+THK NH+TKVKAIKETWA  CDGFVAFSD  D  + +F+I+HEGPE + NMWQKSRAIWKYI+FHYK +FDWF+LGGDD+F+IVENLRKYLLS+DI  AAGG  NGG  PMYLGRR RP  +D  IFNSGGA+YVLNQA+V LLA +LD+  C+ H+  SWEDV V  CL+K GV AFDTRD  GRERFHP+TP  H 
Sbjct:  117 SSSKACGTNDDHKEMLSHVDVWEGASKTMPRIFCGIFTHKKNHFTKVKAIKETWAANCDGFVAFSDAADPDLHTFQIEHEGPEEYDNMWQKSRAIWKYINFHYKNDFDWFLLGGDDLFVIVENLRKYLLSDDIMRAAGGRINGGPNPMYLGRRLRPFNDDEWIFNSGGASYVLNQASVRLLASYLDEDACQPHKKTSWEDVMVAMCLKKNGVVAFDTRDESGRERFHPYTPAVHF 351          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: D7FK28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK28_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 5.790e-114
Identity = 156/235 (66.38%), Postives = 186/235 (79.15%), Query Frame = 1
Query:    1 SLARSPHRSDKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            S AR+   +D H+ +L  V+VW GA+K  PRIFCGI+TH+ NH+TKVKAIKETWA  CDGFVAFSD  D  + +F+I+HEGPE +GNMWQKSRAIWKYI+FHYK +FDWF+LGGDD+F+IVENLRKYLLS++I  AAGG  NGG  PMYLGRR RP  +D  IFNSGGA+YVLNQA+V LLA +LD+  C+ H+  SWEDV V  CL+K GV AFDTRD  GRERFHP+TP  H 
Sbjct:  169 SSARACAMNDDHKKMLTHVDVWEGASKTMPRIFCGIFTHRKNHFTKVKAIKETWAVNCDGFVAFSDAADPDLHTFQIEHEGPEEYGNMWQKSRAIWKYINFHYKNDFDWFLLGGDDLFVIVENLRKYLLSDEIMHAAGGGINGGPNPMYLGRRLRPFNDDEWIFNSGGASYVLNQASVGLLASYLDEDACQPHKKTSWEDVMVAMCLKKNGVVAFDTRDASGRERFHPYTPAVHF 403          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: D7FK31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK31_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 2.000e-111
Identity = 152/227 (66.96%), Postives = 180/227 (79.30%), Query Frame = 1
Query:   25 SDKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            +D H+ LL QV+VW  A   +PR+FCGIYTH+ NH TKV AIKETWA  CDGFVAFSD  D  + SFKIKHEGPE + NMWQKSRAIWKYI+FHYK++FDWFVLGGDD+FLI+ENLRKYLLS++I  AAGGL NGGT PM+LGRR +  G  +RI+N+GGA+YV+NQA+V LL  HLDD +C+ H   SWEDV V  CL+  GV AFDTRD  GRERFHPF+P  H+
Sbjct:  126 NDDHKKLLAQVDVWEDAVTNSPRVFCGIYTHQNNHATKVMAIKETWARHCDGFVAFSDVADDAILSFKIKHEGPEEYSNMWQKSRAIWKYINFHYKDDFDWFVLGGDDLFLIMENLRKYLLSDEIIRAAGGLQNGGTNPMFLGRRLQRFGEQHRIYNNGGASYVMNQASVGLLGNHLDDSQCQPHTKQSWEDVLVSRCLKVNGVMAFDTRDDLGRERFHPFSPAVHI 352          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: D7FK39_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 2.290e-106
Identity = 152/227 (66.96%), Postives = 177/227 (77.97%), Query Frame = 1
Query:   25 SDKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            +D H+ LL QV VW GAAK  PRIFCGI T   NH T VKAIKETWA+ CDGFVAFSD+ D  + + KIK EG E  GNMWQKSRAIWKYI+FHYKE+FDWF+LGGDD+FLI ENLRKYLLS+++K+A GG+ NGG  PMYLGRR R  G D+R++N+G A+YVLNQA+V LLA HLDD +C+ HR   WED+ V  CL+K GV AFDTRD  GRERFHPFTP  H 
Sbjct:  193 NDDHQKLLAQVRVWEGAAKTAPRIFCGISTRHQNHRTNVKAIKETWASHCDGFVAFSDKTDQELSTLKIKREGLEEEGNMWQKSRAIWKYINFHYKEDFDWFILGGDDLFLIAENLRKYLLSDEVKSAGGGIKNGGANPMYLGRRLRVFGEDHRMYNNGRASYVLNQASVGLLASHLDDDDCQPHRKTPWEDLLVSMCLKKNGVSAFDTRDTLGRERFHPFTPATHF 419          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: A0A6H5L1N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N0_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 3.180e-106
Identity = 153/231 (66.23%), Postives = 178/231 (77.06%), Query Frame = 1
Query:   22 RSDKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVK---AIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            R+D H+ LL QV VW GAAK  PRIFCGI T   NH T VK   AIKETWA+ CDGFVAFSD+ D  + + KIK EG E  GNMWQK RAIWKYI+FHYKE+FDWF+LGGDD+FLI ENLRKYLLS+++K+A GG+ NGGT PMYLGRR R  G D+R++N+G A+YVLNQA+V LLA HLDD +C+ HR   WED+ V  CL+K GV AFDTRD  GRERFHPFTP  H 
Sbjct:  213 RNDDHKKLLAQVRVWEGAAKTAPRIFCGISTRHQNHRTNVKVGRAIKETWASHCDGFVAFSDKTDQDLNTLKIKREGLEEDGNMWQKIRAIWKYINFHYKEDFDWFILGGDDLFLIAENLRKYLLSDEVKSAGGGINNGGTNPMYLGRRLRVFGEDHRMYNNGRASYVLNQASVGLLASHLDDDDCQPHRKTPWEDLLVSMCLKKNGVSAFDTRDTLGRERFHPFTPATHF 443          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: A0A6H5JVG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG9_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 3.580e-103
Identity = 151/240 (62.92%), Postives = 177/240 (73.75%), Query Frame = 1
Query:   25 SDKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRK-YLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDV------------QVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHL 705
            +D H+ LL QV+VW  A   +PR+FCGIYTH  NH TKV AIKETWA  CDGFVAFSD  D  + S  IKHEGPE + NMWQKSRAIWKYI+FHYK++FDWFVLGGDD+FLIVENLRK YLLS++I  AAGGL NGGT P++LGRR +  G  +RI+N+GGA+YV+NQA+V LL  HLDD  C+ H   SWEDV            +V  CLR  GV AFDTRD  GRERFHPF+P  H+
Sbjct:  121 NDDHKKLLAQVDVWEDAVTNSPRVFCGIYTHHKNHATKVMAIKETWARHCDGFVAFSDVADDAILS--IKHEGPEEYSNMWQKSRAIWKYINFHYKDDFDWFVLGGDDLFLIVENLRKVYLLSDEIIRAAGGLQNGGTNPIFLGRRLQRFGEQHRIYNNGGASYVMNQASVGLLGNHLDDSRCQPHAKQSWEDVLVSISRASFKKTEVSRCLRNNGVMAFDTRDGLGRERFHPFSPAVHI 358          
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Match: A0A7S2V9L2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9L2_9STRA)

HSP 1 Score: 251 bits (641), Expect = 1.330e-80
Identity = 117/215 (54.42%), Postives = 145/215 (67.44%), Query Frame = 1
Query:   64 WGGAAKATPRIFCGIYTHKANHYTKVKAIKETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYIDFHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYLGRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWEDVQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHLK 708
            W    K  P+I C  YT    H TKVKA K TWA+RCDGF+  SD  D  VPS K+ H+GPE + N+WQK RA WKY+ +HY++ FDWF +GGDD ++IVENLRKYLLS++I+ A       G  P+YLGRRF+P+  D  IFNSGGA +VLN+ A+ +L   LD + C  +    WEDVQV  CLR  GV  +DTRD +GRERF PF PGHH K
Sbjct:    5 WPKGVKTEPKILCITYTISKYHKTKVKAQKHTWASRCDGFIVISDTDDFVVPSVKVPHQGPEEYNNIWQKVRAAWKYVYYHYRDEFDWFYMGGDDTYVIVENLRKYLLSQEIQQAH----KHGKLPLYLGRRFKPK--DGNIFNSGGAGHVLNRRALEILTLSLDSQFCNPNLKGFWEDVQVAKCLRHHGVYPYDTRDDWGRERFLPFAPGHHYK 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4261.10893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G568_ECTSI6.480e-13176.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTE6_ECTSI4.930e-12272.12WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FK30_ECTSI8.870e-11870.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMC5_9PHAE2.830e-11465.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK28_ECTSI5.790e-11466.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK31_ECTSI2.000e-11166.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK39_ECTSI2.290e-10666.96WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L1N0_9PHAE3.180e-10666.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVG9_9PHAE3.580e-10362.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V9L2_9STRA1.330e-8054.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4261contigH-paniculata_contig4261:12663..15845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue6.5e-104
Seed eggNOG ortholog2880.D7G568
KEGG koko:K00731
KEGG ReactionR05908
KEGG Pathwayko00512,ko01100,map00512,map01100
KEGG ModuleM00056
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
EggNOG OGsKOG2246@1,KOG2246@2759
EC2.4.1.122
COG Functional cat.S
CAZyGT31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons5
Model size711
Cds size711
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4261.10893.1prot_H-paniculata_contig4261.10893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4261 12663..15845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930295.7089045-CDS-H-paniculata_contig4261:12662..128061622930295.7089045-CDS-H-paniculata_contig4261:12662..12806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 12663..12806 +
1691481229.824744-CDS-H-paniculata_contig4261:12662..128061691481229.824744-CDS-H-paniculata_contig4261:12662..12806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 12663..12806 +
1622930295.7269697-CDS-H-paniculata_contig4261:13241..133181622930295.7269697-CDS-H-paniculata_contig4261:13241..13318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 13242..13318 +
1691481229.838399-CDS-H-paniculata_contig4261:13241..133181691481229.838399-CDS-H-paniculata_contig4261:13241..13318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 13242..13318 +
1622930295.7417276-CDS-H-paniculata_contig4261:13691..138481622930295.7417276-CDS-H-paniculata_contig4261:13691..13848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 13692..13848 +
1691481229.864433-CDS-H-paniculata_contig4261:13691..138481691481229.864433-CDS-H-paniculata_contig4261:13691..13848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 13692..13848 +
1622930295.7612753-CDS-H-paniculata_contig4261:15229..154571622930295.7612753-CDS-H-paniculata_contig4261:15229..15457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 15230..15457 +
1691481229.8761134-CDS-H-paniculata_contig4261:15229..154571691481229.8761134-CDS-H-paniculata_contig4261:15229..15457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 15230..15457 +
1622930295.7825456-CDS-H-paniculata_contig4261:15740..158451622930295.7825456-CDS-H-paniculata_contig4261:15740..15845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 15741..15845 +
1691481229.8850827-CDS-H-paniculata_contig4261:15740..158451691481229.8850827-CDS-H-paniculata_contig4261:15740..15845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4261 15741..15845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4261.10893.1

>prot_H-paniculata_contig4261.10893.1 ID=prot_H-paniculata_contig4261.10893.1|Name=mRNA_H-paniculata_contig4261.10893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp
SLARSPHRSDKHRDLLNQVEVWGGAAKATPRIFCGIYTHKANHYTKVKAI
KETWATRCDGFVAFSDEVDLRVPSFKIKHEGPETWGNMWQKSRAIWKYID
FHYKENFDWFVLGGDDIFLIVENLRKYLLSEDIKTAAGGLTNGGTTPMYL
GRRFRPRGNDNRIFNSGGAAYVLNQAAVSLLAQHLDDKECEAHRVCSWED
VQVGNCLRKFGVEAFDTRDCFGRERFHPFTPGHHLK*
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mRNA from alignment at H-paniculata_contig4261:12663..15845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4261.10893.1 ID=mRNA_H-paniculata_contig4261.10893.1|Name=mRNA_H-paniculata_contig4261.10893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3183bp|location=Sequence derived from alignment at H-paniculata_contig4261:12663..15845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACTCGCGCGATCTCCACATAGATCTGACAAGCATCGAGACCTCTTGAA CCAGGTGGAGGTGTGGGGTGGAGCGGCGAAAGCGACGCCTAGAATCTTCT GCGGGATTTACACCCACAAAGCGAATCACTACACCAAAGTCAAGGTGTGT TTATTTTTGTGCACGAAGCTCAGTCTGTTCTGGCGTGTACATGTATGGCG AACGGTGACATGTTCTATGCCGTGCAAATATTTTGCGGGGAACAAGACAT ATCATGGTACGATATACTATAGAAGCATGATATCGGTAACAAAAGTACAC TACCTGCTGCTGTGAGGGGCTGAGGTTATTGTGTGTCGAAATTTGGGCTG GGTTGGGACAGACAGACGACCGAAAATTGCCGACAAGGAAGACGTTGGGG GTTTTGCGCGTTGACAAGTGCTGGTATCTCGAAACCTTGAAAAGCTCACC GAATGTCTATCCCTGACGCTTGTCACCCCAGCCAGTTTGCTAAGTTTCTC GATACGTGGGCGGACGTCATGATCAGTACTTTGGTGATTTTTTAACATGT TAATGCGCTTTCACGTTCTCTTTCGACAGGCAATCAAGGAGACGTGGGCG ACGCGTTGCGATGGCTTCGTGGCTTTCAGTGATGAGGTCGATCTCAGAGT GCCCTCGTAAGTGCGAAATAGAACACATACATATGAACCTGCCTTTGTGC TCGAAATGTTCGAGCATTTCGCCGACAGGGTGTATCCTTGCGATTCCACG ATTACGATTACTATGGCTCACGAAAATTGGCGTGGGGTTTGCGTTGCTCT TGGGAATTATGGCGGTATCAGAAAACCATGTCGTGGCTATTGGTGTTGGT GATGATGGTGGTGTTGGCGGTGTGCGGGAGAGTTCGGTGTCTCTCTAGGT CATGCAAAGCCAGATATCAACCGAAAAATAACTCTTTCCGCTTCAGGTCC ATATTTATATGTACGTATATATATATATTCTGTTTTTTCACATGCGTTTC TCCGTCTCGCATCGGCCTTGAAAAATCAGATTTAAGATCAAGCACGAGGG ACCAGAGACTTGGGGAAACATGTGGCAGAAGAGCCGGGCCATTTGGAAAT ACATCGATTTCCACTACAAGGAAAACTTCGATTGGTTCGTCTTGGGAGGG GACGATATCTTTCTCATTGTGGAGAACCTTCGAAAGGTGACACAACAAGT GTACCGCCTGTTTCTCGGTACACACACGTTCAAATGCATCTACCATCAGT AGTGGGAAAGCGCCAAGAGAGCGCATGCAAAACCCCCCGCTCGCCGTACT CCGTCCTCTCGAAGACGCGTGGTCGGTGACCTAACAACTACGGCATACAA AATATGAGTAGCCGCCTCTAGTTTGTTTAGTTTGTGGATTAATAATTGAG AAGTTTGAAGATGCCGAGCATACTTGCAATTCGTTGTACGATCGTTGTCC CCTTTTTTTATCTAGTTTTGATTATGATTATACTTTTAGTCCAGATTTCG CGAAGGAATCTAACGCAACAACAACCACCGTTTCTTCATCGGAGGTCTCG TTTGAGACGTTATCGTCGATTAACGATCGATTCCAGTTGCCTTGGGCCGG TGTAGCTTTTGTTACAAGCAACAGCCGTTTCGAGAAAAAGCAGGAAGTCG AAAGTGCCGCTTCTCAACCATTTAACAGTCAAATTGTGCTTTGTAAATGA CAATGTGCAAAACGAAGTCGTGGGCTTTCGAATGATATCCTCTGCTTTTG ATGAAGCCTAATTTTGTAAAAAGCTACAACCGTTCAACCATAAACACATA CAACTTTTAGAGAAAAGGAGTATACTTTCTCTGTGCTATAGAAGTGCATT CGGCTGAGTTTGGCACATAATATCTCTGGATCCAAGACCGTTTAGAGGCT GTGGTTGGAACCTTTGGAAAGCTAATATCTGATAAATTTATCTGCGCTAT TCCACAATTCATTCCTATTTATTTTATCAAGATTAATAGATGCTCAAGGT TCGGCTAATTGTGACTATTTTTGAGGTTCCCTCGGTTTTTAACGTTTTTC CATTGAAAAAATGCGAAAGGGGGGCAAAATACCACCTTTTACAGGCCTAT TTATTTTCCTTTTTTTTGCGCCGCACGTGCACCCGATGGTCTTCGTCAAT TTCCGTGAAATTTTGGGGATCAACCCCCAAAAGCATGTAGGATTCCAATT AAAACAAAATAAATAAAATCGAAGATGTTCAAGTGCCACTGCAAAATATT TCCGCTGTATAACCTAATCACGGATACAACTAAGTTATAATGTGGGGTTC AGAGTTATAGTTTCGCAAGGTGATTTTACTACAACAAGGAAAGTTTCATT TAGCAAAATGCAGGGTTCTTTTCAATTTTCATGTCGTCAGTCTTCCTCAT GAGAACTATTTCATGTTTCACCTCGAGTACATATGGGAATAATCCACTGA TGTTCCCTTGTGTAGGTTGTTGCAGTTCATGTCCTGCCCCTCTCCCCCAC CCCCGCACCGTCACCGATAACCCTAACACTCCAACCCCCTCCCGTCCTCT CGACCGCATACCACTAGTACCTACTCTCGGAGGATATCAAGACGGCTGCG GGGGGGCTCACCAATGGGGGCACAACGCCGATGTACCTTGGACGGCGTTT CCGACCTCGTGGCAACGACAACAGGATTTTCAACTCTGGTGGAGCGGCTT ATGTGTTGAACCAAGCGGCGGTTTCTTTGTTGGCGCAGCACCTTGACGAC AAGGAGTGTGAGGCGCACAGGGTGTGCAGCTGGGAGGACGTGCAGGTATT TCACCACGGTCCTGTAAGATCCAATGAGGCCCACAACGTACGGCATAACT AAAGCGCGCGAAAACGAGCGTTCTTAAGAGTGGTGCAGTACGGGAAAGGT AGAAAATTGAGAACAGTCGAGAAATGTAGGTACAGAAGCGGACAACAAAG CTTGAAATACCACGAATCAACAGATTGACTGAGCGCCTTACACCATACAC ACACGTGCAATAGAAGCTTGAGTGGTTTTGTAAAAAAAAAAAAAATTCCC TTCGATTATGCTCTCGTTCGGAGAGCAGGTAGGCAACTGTCTGAGGAAGT TCGGAGTGGAGGCGTTCGACACACGGGACTGCTTCGGGCGAGAACGATTC CACCCGTTTACACCCGGCCATCATCTCAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4261:12663..15845+

>mRNA_H-paniculata_contig4261.10893.1 ID=mRNA_H-paniculata_contig4261.10893.1|Name=mRNA_H-paniculata_contig4261.10893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig4261:12663..15845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACTCGCGCGATCTCCACATAGATCTGACAAGCATCGAGACCTCTTGAA
CCAGGTGGAGGTGTGGGGTGGAGCGGCGAAAGCGACGCCTAGAATCTTCT
GCGGGATTTACACCCACAAAGCGAATCACTACACCAAAGTCAAGTCACTC
GCGCGATCTCCACATAGATCTGACAAGCATCGAGACCTCTTGAACCAGGT
GGAGGTGTGGGGTGGAGCGGCGAAAGCGACGCCTAGAATCTTCTGCGGGA
TTTACACCCACAAAGCGAATCACTACACCAAAGTCAAGGCAATCAAGGAG
ACGTGGGCGACGCGTTGCGATGGCTTCGTGGCTTTCAGTGATGAGGTCGA
TCTCAGAGTGCCCTCGCAATCAAGGAGACGTGGGCGACGCGTTGCGATGG
CTTCGTGGCTTTCAGTGATGAGGTCGATCTCAGAGTGCCCTCATTTAAGA
TCAAGCACGAGGGACCAGAGACTTGGGGAAACATGTGGCAGAAGAGCCGG
GCCATTTGGAAATACATCGATTTCCACTACAAGGAAAACTTCGATTGGTT
CGTCTTGGGAGGGGACGATATCTTTCTCATTGTGGAGAACCTTCGAAAGA
TTTAAGATCAAGCACGAGGGACCAGAGACTTGGGGAAACATGTGGCAGAA
GAGCCGGGCCATTTGGAAATACATCGATTTCCACTACAAGGAAAACTTCG
ATTGGTTCGTCTTGGGAGGGGACGATATCTTTCTCATTGTGGAGAACCTT
CGAAAGTACCTACTCTCGGAGGATATCAAGACGGCTGCGGGGGGGCTCAC
CAATGGGGGCACAACGCCGATGTACCTTGGACGGCGTTTCCGACCTCGTG
GCAACGACAACAGGATTTTCAACTCTGGTGGAGCGGCTTATGTGTTGAAC
CAAGCGGCGGTTTCTTTGTTGGCGCAGCACCTTGACGACAAGGAGTGTGA
GGCGCACAGGGTGTGCAGCTGGGAGGACGTGCAGTACCTACTCTCGGAGG
ATATCAAGACGGCTGCGGGGGGGCTCACCAATGGGGGCACAACGCCGATG
TACCTTGGACGGCGTTTCCGACCTCGTGGCAACGACAACAGGATTTTCAA
CTCTGGTGGAGCGGCTTATGTGTTGAACCAAGCGGCGGTTTCTTTGTTGG
CGCAGCACCTTGACGACAAGGAGTGTGAGGCGCACAGGGTGTGCAGCTGG
GAGGACGTGCAGGTAGGCAACTGTCTGAGGAAGTTCGGAGTGGAGGCGTT
CGACACACGGGACTGCTTCGGGCGAGAACGATTCCACCCGTTTACACCCG
GCCATCATCTCAAGTGAGTAGGCAACTGTCTGAGGAAGTTCGGAGTGGAG
GCGTTCGACACACGGGACTGCTTCGGGCGAGAACGATTCCACCCGTTTAC
ACCCGGCCATCATCTCAAGTGA
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