mRNA_H-paniculata_contig4261.10892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE) HSP 1 Score: 262 bits (670), Expect = 9.310e-83 Identity = 134/167 (80.24%), Postives = 146/167 (87.43%), Query Frame = 3
Query: 147 PQSG--LPWFKVWMPKPAPGAAEAERPPGNAMDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQPLQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMGH 641
PQ G LP+F W+P+PA GAA+A P +SCGFKLIMGTVGGAGMGFVFG+FLG MGDMQPLQM+NGREVPQAP REQ RL YKQTA+RSL M RNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFG+KQGPQAAC GC+GMA FSA+MDK+MGH
Sbjct: 26 PQLGSRLPFFLPWVPRPAAGAADAMPTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA) HSP 1 Score: 201 bits (511), Expect = 7.220e-59 Identity = 107/161 (66.46%), Postives = 121/161 (75.16%), Query Frame = 3
Query: 159 LPWFKVWMPKPAPGAAEAERPPGNAMDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQPLQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMGH 641
LP K W + G +PP +SCG +LIMGT GG GMG +FG+FLG MGDMQP+Q++NGREVPQAPL EQ R Y T RSLGMA+NFASFSAIFM SECVIEKMRGK DMMNSVY GC TG AFGIK GP+ A GCLGMAAFSA++D +MGH
Sbjct: 42 LPTVKAWDMRT--GGTMPPQPPALG-ESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: W7TL11_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL11_9STRA) HSP 1 Score: 152 bits (384), Expect = 4.680e-40 Identity = 85/176 (48.30%), Postives = 110/176 (62.50%), Query Frame = 3
Query: 114 RSNIAFLGPWSPQSGLPWFKVWMPKPAPGAAEAERPPGNAMDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQP-LQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMG 638
+ ++ F P P LP++K P A PP N ++C + + G V GAG+G + GIFLG MGDM P + ++NGRE PQAP EQ+RL Y+ T ER ARNF + +A+F G +CV+EK RGK D N+V +GC GAA KQGPQAAC GC G AAFS IM+ +MG
Sbjct: 33 KPDLLFTSP--PPFPLPFYKYVSLPQTPAGMVAVAPP-NPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA) HSP 1 Score: 150 bits (379), Expect = 3.630e-39 Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 3
Query: 132 LGPWSPQSGLPWFKVWMPKPAPGAAEAERPPGNAMDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQP-LQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMGH 641
L P+ + LP+ WMP GA E +SCG K +G GGA MG + G+FLG M DM P + ++NG+EVPQAPL+EQ R + T E+ + +RNFA + +F GSEC++EK RGK D+ N V +GC TGAA KQGPQAA GC G AAFS ++D +MGH
Sbjct: 51 LNPYFNTTRLPYLIPWMPT-FNGAQEPPPDFSFMTESCGIKSAIGLFGGAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: A0A7S2AAN4_TRICV (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAN4_TRICV) HSP 1 Score: 144 bits (363), Expect = 2.230e-36 Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 3
Query: 159 LPWFKVWMPKPAPGAAEAERPPGN---AMDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQP-LQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMGH 641
LP+ W P P P A+ AE PP + +SCG K +G GGA G G+FLG M DM P + ++NG+EVPQAPL+EQ+R + T E+ + +RNFA + +F G+EC++EK RGK D+ NS GC TGAA KQGPQAA GC G A FS ++D + H
Sbjct: 97 LPYLTPWYPIPGPNAS-AEGPPPDFSWLSESCGGKAAIGVFGGAVCGLFMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQMRTTVRATGEKCIYWSRNFAFITGVFGGTECLVEKYRGKHDVWNSALGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSVFPH 260
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: K0TBX0_THAOC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBX0_THAOC) HSP 1 Score: 143 bits (361), Expect = 2.990e-36 Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 3
Query: 156 GLPWFKVWMPKPAPGAAEAERPPGN--AMDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQP-LQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMG 638
GLP+ + W A+ AE PP +SCG K +G +GG MG V G+FLG + DM P + ++ G+EVPQAPL+EQ+R + TA++SL R FA + +F GSEC++EK RGK D+ NSV +GC TGAA KQGPQA+ AGC G A FS ++D MG
Sbjct: 83 GLPYPQPWA---RANASPAELPPNFDWLSESCGSKAAIGVIGGGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMG 243
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA) HSP 1 Score: 141 bits (355), Expect = 4.730e-36 Identity = 73/141 (51.77%), Postives = 93/141 (65.96%), Query Frame = 3
Query: 222 PGNAMDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQP-LQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMGH 641
PG A +SC + ++G+ G MG V G+FLG MGD+ P + V G+E PQ PL EQ R Y+ TAERS+G AR+F + +A+F G+ECVIEK RG+ D N V +GCA GA GP AAC GC G AAFSA + +MGH
Sbjct: 51 PGWAAESCVGRAVLGSFAGGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: A0A6U3RYY1_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RYY1_9STRA) HSP 1 Score: 143 bits (360), Expect = 7.050e-36 Identity = 78/163 (47.85%), Postives = 104/163 (63.80%), Query Frame = 3
Query: 159 LPWFKVWMPKPAPGAAEAERPPGNAM--DSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQP-LQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMG 638
LP+F+ W P P + PP +SCG K +G GG MG + G+FLG M DM P + ++ G+EVPQAPL+EQ+R + TAE+S+ R FA + +F GSEC++EK RGKTD+ NSV +GC TGAA K GP +A GC G AAFS ++D +MG
Sbjct: 105 LPYFQPWKPTSGP----EQLPPDFTFLSESCGGKAAIGVFGGGVMGLLMGVFLGAMSDMTPPVTVIGGKEVPQAPLKEQMRTTMRATAEKSMYWCRQFAFITGVFSGSECLVEKYRGKTDVWNSVLSGCVTGAAMQAKAGPSSAAFGCGGFAAFSLVIDSVMG 263
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: A0A7S3VGZ9_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGZ9_9STRA) HSP 1 Score: 142 bits (357), Expect = 8.850e-36 Identity = 82/168 (48.81%), Postives = 109/168 (64.88%), Query Frame = 3
Query: 153 SGLPWFKVWMPKPAPGAAEAER---PP--GNAMDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQP-LQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMG 638
+G+P +M P P A + PP G +SC K +G +GG+ G V G+FLG M DM P + ++NG+EVPQAPLREQ+R + T E+SL ARNFA + +F G++C++EK RG D+ NSV +GC TGAA KQGPQAA GC G AAFS ++DK+MG
Sbjct: 68 TGIPPQAQYMAYPVPWRATSGPDYLPPDFGWLSESCAGKTAIGVLGGSVCGLVMGVFLGAMSDMTPPVTIINGKEVPQAPLREQMRTTLRATGEKSLYWARNFAFITGVFGGTDCLVEKYRGTHDVWNSVISGCVTGAAMQAKQGPQAAAIGCGGFAAFSLVIDKVMG 235
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Match: A0A448Z601_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z601_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.140e-35 Identity = 80/167 (47.90%), Postives = 102/167 (61.08%), Query Frame = 3
Query: 150 QSGLPWFKVWMPKPAPGAAEAERPPGNA--MDSCGFKLIMGTVGGAGMGFVFGIFLGMMGDMQP-LQMVNGREVPQAPLREQVRLQYKQTAERSLGMARNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGIKQGPQAACAGCLGMAAFSAIMDKIMGH 641
+ LP+F W P E PP A MD C K +G GG MG + G+FLG + D QP +Q+ G++VPQAP +EQ R + TAE+S+ RNFA + +F GSEC++EK RGK DM N V +GC TGAA GPQAA GC G AAFS ++DKIMG+
Sbjct: 108 RKSLPYFMPWKTSGGP----TEIPPNYAWLMDGCAGKAAIGVFGGGVMGLLMGVFLGALSDSQPPIQVAGGKDVPQAPFKEQARYTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGCGGFAAFSIVIDKIMGN 270 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4261.10892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4261.10892.1 >prot_H-paniculata_contig4261.10892.1 ID=prot_H-paniculata_contig4261.10892.1|Name=mRNA_H-paniculata_contig4261.10892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp MVDHNSGKSNEGFGDTRQQQQQQQHQRSNIAFLGPWSPQSGLPWFKVWMPback to top mRNA from alignment at H-paniculata_contig4261:6975..9528- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4261.10892.1 ID=mRNA_H-paniculata_contig4261.10892.1|Name=mRNA_H-paniculata_contig4261.10892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2554bp|location=Sequence derived from alignment at H-paniculata_contig4261:6975..9528- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4261:6975..9528- >mRNA_H-paniculata_contig4261.10892.1 ID=mRNA_H-paniculata_contig4261.10892.1|Name=mRNA_H-paniculata_contig4261.10892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig4261:6975..9528- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |