prot_H-paniculata_contig42608.10890.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig42608.10890.1
Unique Nameprot_H-paniculata_contig42608.10890.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length159
Homology
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: UPI001F0214A0 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F0214A0)

HSP 1 Score: 66.2 bits (160), Expect = 1.120e-9
Identity = 44/148 (29.73%), Postives = 70/148 (47.30%), Query Frame = 0
Query:    3 NQKKTKKDRRLCWVCGSSEHIARRCPKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLIST 150
            N    KK +  C  CG   H A  C     +  +G   ++ T +    + A+  +     NP     KE W  D+GAT H+ +   +   Y PA P     + N     +EG+G+++L+++      +V  LN V HVPE+R+NL+ST
Sbjct:  245 NYPNKKKFKGNCHNCGKIGHKAADCRAPKKEKKKGQANMVETNEDVDDLCAMLSECNLVGNP-----KEWW-IDSGATRHICAVREAFASYAPAGPDETIYMGNSATAKIEGYGKIMLKMTSG----KVVTLNNVCHVPEIRKNLVST 382          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: UPI000905CD14 (uncharacterized protein LOC109226016 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905CD14)

HSP 1 Score: 57.0 bits (136), Expect = 1.430e-6
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 0
Query:   29 KRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVT--REKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLIST 150
            KR   T E  +  L   +  KA      ++K+  N  +     +E W  D+GAT H+ +++     Y P  P     +AN     +EG G++VL+++     +++  LNKV HVPE+R+NL+ T
Sbjct:  174 KRKEMTLEDLIVCLRIEEDNKAA-----EKKSRGNSTIMVGNARECW-IDSGATRHVCANKEFFTSYAPGGPNNTVFMANSATAKIEGTGKIVLKMTS----VKIVTLNKVLHVPEMRKNLVPT 287          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A284S1T9_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S1T9_ARMOS)

HSP 1 Score: 55.8 bits (133), Expect = 4.060e-6
Identity = 45/130 (34.62%), Postives = 59/130 (45.38%), Query Frame = 0
Query:   29 KRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATDTSG 158
            +R   T +   A  A IK   A  A TD      +PA++    HWN+DTGA+ HMT        Y+P +      +A+ T +  EG G +VL     GE   V  L    HVP LR NL+S    T   G
Sbjct:  275 RRQKGTGKREAANSADIKEETASQASTDPS----SPAMS----HWNTDTGASRHMTPHRHWFNVYSPHIVPIR--LADNTVIYSEGIGTVVLEPEVEGEKSTVVELLDTLHVPALRNNLLSPYHLTREKG 394          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438D407_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D407_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 4.460e-6
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 0
Query:   14 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 155
            CW CG + H  R+C  PK+ ++ +                 AVT++ +     AV    + W  D+GA+ H TS     ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  166 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALLLAVDSPLDDWVLDSGASFHTTSHREIIQNYVAGDFGKV-YLADGSALDVVGLGDV--RISLPNG--SVWLLEKVRHIPDLRRNLISVGQLDD 290          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438H787_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H787_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 4.480e-6
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 0
Query:   14 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 155
            CW CG + H  R+C  PK+ ++ +                 AVT++ +     AV    + W  D+GA+ H TS     ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  239 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALLLAVDSPLDDWVLDSGASFHTTSHREIIQNYVAGDFGKV-YLADGSALDVVGLGDV--RISLPNG--SVWLLEKVQHIPDLRRNLISVGQLDD 363          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438DW21_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DW21_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 5.840e-6
Identity = 44/144 (30.56%), Postives = 69/144 (47.92%), Query Frame = 0
Query:   14 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 155
            CW CG + H  R+C  PK+ ++ +                 A+T++       AV    + W  D+GA+ H T      ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS R+  D
Sbjct:  239 CWNCGKTGHFKRQCKSPKKKNEDDSAN--------------AITEEVHDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYIAGDFGKV-YLADGSALDVVGLGDI--RISLPNG--SVWLLEKVRHIPDLRRNLISVRQLDD 363          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438EZF0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EZF0_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 6.080e-6
Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 0
Query:   14 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 155
            CW CG + H  R+C  PK+ +D ++ T A+   ++    +             AV    + W  D+GA+ H T      ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  239 CWNCGKTGHFKRQCKNPKKKND-DDSTNAVTEEVQDALLL-------------AVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV-YLADGSALDVVGLGDV--RISLPNG--SVWLLEKVRHIPDLRRNLISVGQLDD 363          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438KBI6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KBI6_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 6.760e-6
Identity = 46/136 (33.82%), Postives = 66/136 (48.53%), Query Frame = 0
Query:   14 CWVCGSSEHIARRCPKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLIS 149
            CW CG + H  R+C K     NE   A + T K   A+  V D      +P      + W  D+GA+ H T      ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS
Sbjct:  193 CWNCGKTGHFKRQC-KSPKKKNEDDSANVVTEKVHDALLLVVD------SPL-----DDWVLDSGASFHTTPHREIIQNYVAGDFGKV-YLADGSTLDVVGIGDV--RISLPNR--SVWLLEKVRHIPDLRRNLIS 311          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438GLU8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GLU8_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 8.090e-6
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 0
Query:   14 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 155
            CW CG + H  R+C  PK+ ++ +                 AVT++ + T   AV    + W  D GA+ H T      ++Y     G +  +A+G+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  239 CWNCGKTGHFKRQCKNPKKKNEDDSAN--------------AVTEEVQDTLLLAVDSPLDDWVLDLGASFHTTPHREIIQNYVAGDFGKV-YLADGSALDVVGLGDV--RISLPNG--SVWLLEKVRHIPDLRRNLISVGQLDD 363          
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Match: A0A438GDP4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GDP4_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 8.140e-6
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 0
Query:   14 CWVCGSSEHIARRC--PKRHHDTNEGTVALLATIKGPKAMTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGTMCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLISTRRATD 155
            CW CG + H  R+C  PK+ ++ +                 AVT++ +     AV    + W  D+GA+ H T      ++Y     G +  +ANG+ + V G G +  R+S P     V +L KV H+P+LRRNLIS  +  D
Sbjct:  155 CWNCGKTCHFKRQCKSPKKKNEDDSAN--------------AVTEEVQDALFLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV-YLANGSALDVVGLGDV--RISLPNG--SVWLLEKVRHIPDLRRNLISVGQLDD 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42608.10890.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F0214A01.120e-929.73DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI000905CD141.430e-630.65uncharacterized protein LOC109226016 n=1 Tax=Nicot... [more]
A0A284S1T9_ARMOS4.060e-634.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A438D407_VITVI4.460e-631.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A438H787_VITVI4.480e-631.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A438DW21_VITVI5.840e-630.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EZF0_VITVI6.080e-630.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A438KBI6_VITVI6.760e-633.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GLU8_VITVI8.090e-631.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GDP4_VITVI8.140e-631.25Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 13..29
e-value: 0.0049
score: 25.5
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 13..29
e-value: 3.1E-4
score: 20.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 14..29
score: 8.944
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 3..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42608contigH-paniculata_contig42608:132..608 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42608.10890.1mRNA_H-paniculata_contig42608.10890.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig42608 132..608 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig42608.10890.1 ID=prot_H-paniculata_contig42608.10890.1|Name=mRNA_H-paniculata_contig42608.10890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
GDNQKKTKKDRRLCWVCGSSEHIARRCPKRHHDTNEGTVALLATIKGPKA
MTAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDEISSEDYTPALPGT
MCVIANGTFVPVEGWGRLVLRVSQPGEILRVPVLNKVAHVPELRRNLIST
RRATDTSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf